RNA–Protein interactions for RNA: ENST00000568219.5

PALB2-206, Transcript of partner and localizer of BRCA2, humanhuman

TSL 1 (best) BASIC

Gene PALB2, Length 3,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-206ENST00000568219 NUCB1Q02818 461 aa13.24□□□□□ -0.29
PALB2-206ENST00000568219 BMP2KLQ5H9B9 411 aa13.24□□□□□ -0.29
PALB2-206ENST00000568219 HDGFL2Q7Z4V5 671 aaPredicted RBP13.24□□□□□ -0.29
PALB2-206ENST00000568219 SNX21Q969T3 373 aa13.24□□□□□ -0.29
PALB2-206ENST00000568219 MAGI3Q5TCQ9 1506 aa13.24□□□□□ -0.29
PALB2-206ENST00000568219 ZMYM4Q5VZL5 1548 aa13.24□□□□□ -0.29
PALB2-206ENST00000568219 DTNBO60941 627 aa13.24□□□□□ -0.29
PALB2-206ENST00000568219 FBLN1P23142 703 aa13.24□□□□□ -0.29
PALB2-206ENST00000568219 GPRASP1Q5JY77 1395 aa13.24□□□□□ -0.29
PALB2-206ENST00000568219 ZNF521Q96K83 1311 aa13.23□□□□□ -0.29
PALB2-206ENST00000568219 PLPPR3Q6T4P5 718 aa13.23□□□□□ -0.29
PALB2-206ENST00000568219 DNAJC5BQ9UF47 199 aa13.23□□□□□ -0.29
PALB2-206ENST00000568219 HMMRO75330 724 aa13.23□□□□□ -0.29
PALB2-206ENST00000568219 TSHZ3Q63HK5 1081 aa13.23□□□□□ -0.29
PALB2-206ENST00000568219 TRERF1Q96PN7 1200 aa13.23□□□□□ -0.29
PALB2-206ENST00000568219 CWC22Q9HCG8 908 aaKnown RBP13.23□□□□□ -0.29
PALB2-206ENST00000568219 DIAPH3Q9NSV4 1193 aa13.23□□□□□ -0.29
PALB2-206ENST00000568219 PRAG1Q86YV5 1406 aa13.23□□□□□ -0.29
PALB2-206ENST00000568219 HDAC1Q13547 482 aaPredicted RBP13.23□□□□□ -0.29
PALB2-206ENST00000568219 BBXQ8WY36 941 aaPredicted RBP13.23□□□□□ -0.29
PALB2-206ENST00000568219 JARID2Q92833 1246 aaPredicted RBP13.23□□□□□ -0.29
PALB2-206ENST00000568219 NOL7Q9UMY1 257 aaKnown RBP13.23□□□□□ -0.29
PALB2-206ENST00000568219 HECW1Q76N89 1606 aa13.23□□□□□ -0.29
PALB2-206ENST00000568219 TCOF1Q13428 1488 aaKnown RBP13.23□□□□□ -0.29
PALB2-206ENST00000568219 TERF2IPQ9NYB0 399 aa13.22□□□□□ -0.29
PALB2-206ENST00000568219 BCORL1Q5H9F3 1711 aa13.22□□□□□ -0.29
PALB2-206ENST00000568219 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.22□□□□□ -0.29
PALB2-206ENST00000568219 NSD3Q9BZ95 1437 aa13.22□□□□□ -0.29
PALB2-206ENST00000568219 ERICH4A6NGS2 130 aa13.22□□□□□ -0.29
PALB2-206ENST00000568219 TWISTNBQ3B726 338 aaPredicted RBP13.21□□□□□ -0.29
PALB2-206ENST00000568219 API5Q9BZZ5 524 aaKnown RBP13.21□□□□□ -0.29
PALB2-206ENST00000568219 HCLS1P14317 486 aaPredicted RBP13.21□□□□□ -0.29
PALB2-206ENST00000568219 NUTM2FA1L443 756 aa13.21□□□□□ -0.3
PALB2-206ENST00000568219 TRMT2AQ8IZ69 625 aaKnown RBP13.21□□□□□ -0.3
PALB2-206ENST00000568219 LRSAM1Q6UWE0 723 aa13.2□□□□□ -0.3
PALB2-206ENST00000568219 EVC2Q86UK5 1308 aa13.2□□□□□ -0.3
PALB2-206ENST00000568219 PLB1Q6P1J6 1458 aa13.2□□□□□ -0.3
PALB2-206ENST00000568219 ADCY5O95622 1261 aa13.2□□□□□ -0.3
PALB2-206ENST00000568219 RBM25P49756 843 aaKnown RBP13.2□□□□□ -0.3
PALB2-206ENST00000568219 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.2□□□□□ -0.3
PALB2-206ENST00000568219 MAP4K4O95819 1239 aaPredicted RBP13.2□□□□□ -0.3
PALB2-206ENST00000568219 NOLC1Q14978 699 aaKnown RBP eCLIP13.2□□□□□ -0.3
PALB2-206ENST00000568219 DCTN1Q14203 1278 aa13.19□□□□□ -0.3
PALB2-206ENST00000568219 KIAA0586Q9BVV6 1533 aa13.19□□□□□ -0.3
PALB2-206ENST00000568219 ERC2O15083 957 aa13.19□□□□□ -0.3
PALB2-206ENST00000568219 TRIM5Q9C035 493 aa13.19□□□□□ -0.3
PALB2-206ENST00000568219 ZBTB40Q9NUA8 1239 aa13.19□□□□□ -0.3
PALB2-206ENST00000568219 SMC3Q9UQE7 1217 aa13.19□□□□□ -0.3
PALB2-206ENST00000568219 ARHGEF11O15085 1522 aa13.19□□□□□ -0.3
PALB2-206ENST00000568219 DDX54Q8TDD1 881 aaKnown RBP13.18□□□□□ -0.3
PALB2-206ENST00000568219 PPP1R9BQ96SB3 815 aa13.18□□□□□ -0.3
PALB2-206ENST00000568219 ADGRF5Q8IZF2 1346 aa13.18□□□□□ -0.3
PALB2-206ENST00000568219 HMGXB3Q12766 1538 aa13.18□□□□□ -0.3
PALB2-206ENST00000568219 TPD52L1Q16890 204 aaPredicted RBP13.18□□□□□ -0.3
PALB2-206ENST00000568219 CCDC94Q9BW85 323 aaPredicted RBP13.18□□□□□ -0.3
PALB2-206ENST00000568219 TMEM63CQ9P1W3 806 aa13.18□□□□□ -0.3
PALB2-206ENST00000568219 CAMK4Q16566 473 aa13.17□□□□□ -0.3
PALB2-206ENST00000568219 EXOC6BQ9Y2D4 811 aa13.17□□□□□ -0.3
PALB2-206ENST00000568219 C16orf45Q96MC5 204 aaPredicted RBP13.17□□□□□ -0.3
PALB2-206ENST00000568219 LMBRD1Q9NUN5 540 aa13.17□□□□□ -0.3
PALB2-206ENST00000568219 UHRF1BP1Q6BDS2 1440 aa13.17□□□□□ -0.3
PALB2-206ENST00000568219 GPATCH8Q9UKJ3 1502 aaKnown RBP13.17□□□□□ -0.3
PALB2-206ENST00000568219 GNAI1P63096 354 aa13.17□□□□□ -0.3
PALB2-206ENST00000568219 RTF1Q92541 710 aaKnown RBP13.17□□□□□ -0.3
PALB2-206ENST00000568219 C14orf37Q86TY3 774 aa13.16□□□□□ -0.3
PALB2-206ENST00000568219 OTUD7AQ8TE49 926 aaPredicted RBP13.16□□□□□ -0.3
PALB2-206ENST00000568219 FOSBP53539 338 aa13.16□□□□□ -0.3
PALB2-206ENST00000568219 GOLGA6L19H0YKK7 550 aa13.15□□□□□ -0.3
PALB2-206ENST00000568219 CT47B1P0C2W7 299 aaPredicted RBP13.15□□□□□ -0.3
PALB2-206ENST00000568219 GIMAP6Q6P9H5 292 aa13.15□□□□□ -0.3
PALB2-206ENST00000568219 FERMT3Q86UX7 667 aa13.15□□□□□ -0.3
PALB2-206ENST00000568219 SMAP1Q8IYB5 467 aaPredicted RBP13.15□□□□□ -0.3
PALB2-206ENST00000568219 STK31Q9BXU1 1019 aa13.15□□□□□ -0.3
PALB2-206ENST00000568219 ATP6V1DQ9Y5K8 247 aa13.15□□□□□ -0.3
PALB2-206ENST00000568219 SDSP20132 328 aa13.15□□□□□ -0.3
PALB2-206ENST00000568219 TMX3Q96JJ7 454 aa13.15□□□□□ -0.3
PALB2-206ENST00000568219 BECN2A8MW95 431 aa13.14□□□□□ -0.31
PALB2-206ENST00000568219 BICD2Q8TD16 824 aa13.14□□□□□ -0.31
PALB2-206ENST00000568219 VGLL3A8MV65 326 aa13.14□□□□□ -0.31
PALB2-206ENST00000568219 MCM5P33992 734 aa13.14□□□□□ -0.31
PALB2-206ENST00000568219 ZNF428Q96B54 188 aa13.14□□□□□ -0.31
PALB2-206ENST00000568219 ATAD2Q6PL18 1390 aa13.14□□□□□ -0.31
PALB2-206ENST00000568219 PTPRGP23470 1445 aa13.14□□□□□ -0.31
PALB2-206ENST00000568219 U2AF2P26368 475 aaKnown RBP eCLIP13.14□□□□□ -0.31
PALB2-206ENST00000568219 TSPYL6Q8N831 410 aa13.14□□□□□ -0.31
PALB2-206ENST00000568219 COL17A1Q9UMD9 1497 aaPredicted RBP13.13□□□□□ -0.31
PALB2-206ENST00000568219 KDM5CP41229 1560 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 ZNF445P59923 1031 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 IL1RAPL2Q9NP60 686 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 HS1BP3Q53T59 392 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 PLCD3Q8N3E9 789 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 GPT2Q8TD30 523 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 MAGI2Q86UL8 1455 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 HAP1P54257 671 aaPredicted RBP13.13□□□□□ -0.31
PALB2-206ENST00000568219 CEBPZQ03701 1054 aaKnown RBP13.13□□□□□ -0.31
PALB2-206ENST00000568219 GORABQ5T7V8 394 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 CCDC112Q8NEF3 446 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 MIS18AQ9NYP9 233 aa13.13□□□□□ -0.31
PALB2-206ENST00000568219 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.13□□□□□ -0.31
PALB2-206ENST00000568219 V9GYY5 206 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms