RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 SPINK5Q9NQ38 1064 aaPredicted RBP21.72■■□□□ 1.07
CMTM3-213ENST00000566756 CD163L1Q9NR16 1453 aa21.72■■□□□ 1.07
CMTM3-213ENST00000566756 A0A1W2PP64 1363 aa21.72■■□□□ 1.07
CMTM3-213ENST00000566756 WASLO00401 505 aaPredicted RBP21.72■■□□□ 1.07
CMTM3-213ENST00000566756 TERF2IPQ9NYB0 399 aa21.72■■□□□ 1.07
CMTM3-213ENST00000566756 IQSEC2Q5JU85 1478 aa21.71■■□□□ 1.07
CMTM3-213ENST00000566756 PPM1GO15355 546 aaPredicted RBP21.71■■□□□ 1.07
CMTM3-213ENST00000566756 FAM161AQ3B820 660 aa21.71■■□□□ 1.07
CMTM3-213ENST00000566756 PTPRUQ92729 1446 aa21.71■■□□□ 1.07
CMTM3-213ENST00000566756 ROBO2Q9HCK4 1378 aa21.71■■□□□ 1.07
CMTM3-213ENST00000566756 PIK3R4Q99570 1358 aa21.7■■□□□ 1.06
CMTM3-213ENST00000566756 AAMPQ13685 434 aa21.7■■□□□ 1.06
CMTM3-213ENST00000566756 MORC1Q86VD1 984 aa21.7■■□□□ 1.06
CMTM3-213ENST00000566756 SLC26A8Q96RN1 970 aa21.7■■□□□ 1.06
CMTM3-213ENST00000566756 ATP7BP35670 1465 aa21.7■■□□□ 1.06
CMTM3-213ENST00000566756 WWC1Q8IX03 1113 aa21.69■■□□□ 1.06
CMTM3-213ENST00000566756 PHF23Q9BUL5 403 aaPredicted RBP21.69■■□□□ 1.06
CMTM3-213ENST00000566756 RUNDC1Q96C34 613 aa21.68■■□□□ 1.06
CMTM3-213ENST00000566756 PTCH1Q13635 1447 aa21.68■■□□□ 1.06
CMTM3-213ENST00000566756 XRN1Q8IZH2 1706 aaKnown RBP21.68■■□□□ 1.06
CMTM3-213ENST00000566756 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.68■■□□□ 1.06
CMTM3-213ENST00000566756 ANKRD26Q9UPS8 1709 aa21.68■■□□□ 1.06
CMTM3-213ENST00000566756 CCDC27Q2M243 656 aa21.67■■□□□ 1.06
CMTM3-213ENST00000566756 ANKLE2Q86XL3 938 aa21.67■■□□□ 1.06
CMTM3-213ENST00000566756 HDGFL2Q7Z4V5 671 aaPredicted RBP21.66■■□□□ 1.06
CMTM3-213ENST00000566756 WDR63Q8IWG1 891 aa21.65■■□□□ 1.06
CMTM3-213ENST00000566756 BCAR3O75815 825 aa21.65■■□□□ 1.06
CMTM3-213ENST00000566756 C8orf34Q49A92 452 aa21.65■■□□□ 1.06
CMTM3-213ENST00000566756 CABP1Q9NZU7 370 aa21.65■■□□□ 1.06
CMTM3-213ENST00000566756 AMOTL2Q9Y2J4 779 aa21.65■■□□□ 1.06
CMTM3-213ENST00000566756 CFAP53Q96M91 514 aa21.63■■□□□ 1.05
CMTM3-213ENST00000566756 CHD2O14647 1828 aaKnown RBP21.62■■□□□ 1.05
CMTM3-213ENST00000566756 VIRMAQ69YN4 1812 aaKnown RBP21.62■■□□□ 1.05
CMTM3-213ENST00000566756 KIF20BQ96Q89 1820 aa21.62■■□□□ 1.05
CMTM3-213ENST00000566756 SKAP1Q86WV1 359 aa21.62■■□□□ 1.05
CMTM3-213ENST00000566756 DMRT2Q9Y5R5 561 aa21.62■■□□□ 1.05
CMTM3-213ENST00000566756 CPSF1Q10570 1443 aaKnown RBP21.61■■□□□ 1.05
CMTM3-213ENST00000566756 CCDC61Q9Y6R9 512 aa21.61■■□□□ 1.05
CMTM3-213ENST00000566756 PPIP5K1Q6PFW1 1433 aa21.6■■□□□ 1.05
CMTM3-213ENST00000566756 NUDT16Q96DE0 195 aaKnown RBP21.6■■□□□ 1.05
CMTM3-213ENST00000566756 AKAP12Q02952 1782 aa21.6■■□□□ 1.05
CMTM3-213ENST00000566756 CDC42BPGQ6DT37 1551 aa21.6■■□□□ 1.05
CMTM3-213ENST00000566756 TOPAZ1Q8N9V7 1692 aa21.59■■□□□ 1.05
CMTM3-213ENST00000566756 MON2Q7Z3U7 1717 aa21.59■■□□□ 1.05
CMTM3-213ENST00000566756 CLUAP1Q96AJ1 413 aa21.58■■□□□ 1.05
CMTM3-213ENST00000566756 MAPK8IP3Q9UPT6 1336 aa21.58■■□□□ 1.05
CMTM3-213ENST00000566756 FYB1O15117 783 aa21.57■■□□□ 1.04
CMTM3-213ENST00000566756 TCP11L2Q8N4U5 519 aa21.57■■□□□ 1.04
CMTM3-213ENST00000566756 ITSN1Q15811 1721 aa21.57■■□□□ 1.04
CMTM3-213ENST00000566756 MTHFSP49914 203 aa21.56■■□□□ 1.04
CMTM3-213ENST00000566756 EDC4Q6P2E9 1401 aaKnown RBP21.56■■□□□ 1.04
CMTM3-213ENST00000566756 NEFMP07197 916 aa21.56■■□□□ 1.04
CMTM3-213ENST00000566756 RARSP54136 660 aaKnown RBP21.56■■□□□ 1.04
CMTM3-213ENST00000566756 PRR36Q9H6K5 1346 aa21.55■■□□□ 1.04
CMTM3-213ENST00000566756 CT47B1P0C2W7 299 aaPredicted RBP21.54■■□□□ 1.04
CMTM3-213ENST00000566756 ZNF692Q9BU19 519 aaPredicted RBP21.54■■□□□ 1.04
CMTM3-213ENST00000566756 CANXP27824 592 aaKnown RBP21.53■■□□□ 1.04
CMTM3-213ENST00000566756 MYH16Q9H6N6 1097 aa21.53■■□□□ 1.04
CMTM3-213ENST00000566756 LAS1LQ9Y4W2 734 aaKnown RBP21.53■■□□□ 1.04
CMTM3-213ENST00000566756 PMFBP1Q8TBY8 1022 aa21.52■■□□□ 1.04
CMTM3-213ENST00000566756 NPHP4O75161 1426 aaPredicted RBP21.52■■□□□ 1.04
CMTM3-213ENST00000566756 IGHDP01880 384 aa21.52■■□□□ 1.04
CMTM3-213ENST00000566756 PLEKHG3A1L390 1219 aa21.51■■□□□ 1.03
CMTM3-213ENST00000566756 KCNA6P17658 529 aa21.51■■□□□ 1.03
CMTM3-213ENST00000566756 GGNBP2Q9H3C7 697 aa21.51■■□□□ 1.03
CMTM3-213ENST00000566756 DAXXQ9UER7 740 aaPredicted RBP21.51■■□□□ 1.03
CMTM3-213ENST00000566756 RGS3P49796 1198 aa21.5■■□□□ 1.03
CMTM3-213ENST00000566756 TNNT2P45379 298 aaPredicted RBP21.49■■□□□ 1.03
CMTM3-213ENST00000566756 PANK1Q8TE04 598 aa21.48■■□□□ 1.03
CMTM3-213ENST00000566756 COG6Q9Y2V7 657 aa21.48■■□□□ 1.03
CMTM3-213ENST00000566756 NCKAP5LQ9HCH0 1330 aa21.48■■□□□ 1.03
CMTM3-213ENST00000566756 ANKARQ7Z5J8 1434 aa21.47■■□□□ 1.03
CMTM3-213ENST00000566756 NRKQ7Z2Y5 1582 aa21.47■■□□□ 1.03
CMTM3-213ENST00000566756 FMN2Q9NZ56 1722 aa21.47■■□□□ 1.03
CMTM3-213ENST00000566756 COL3A1P02461 1466 aaPredicted RBP21.46■■□□□ 1.03
CMTM3-213ENST00000566756 RGPD8O14715 1765 aaPredicted RBP21.46■■□□□ 1.03
CMTM3-213ENST00000566756 RRP7AQ9Y3A4 280 aaKnown RBP21.45■■□□□ 1.02
CMTM3-213ENST00000566756 NEUROD2Q15784 382 aa21.45■■□□□ 1.02
CMTM3-213ENST00000566756 NWD1Q149M9 1564 aa21.44■■□□□ 1.02
CMTM3-213ENST00000566756 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.44■■□□□ 1.02
CMTM3-213ENST00000566756 NALCNQ8IZF0 1738 aa21.43■■□□□ 1.02
CMTM3-213ENST00000566756 FRAT1Q92837 279 aaPredicted RBP21.43■■□□□ 1.02
CMTM3-213ENST00000566756 MAP2P11137 1827 aaKnown RBP21.43■■□□□ 1.02
CMTM3-213ENST00000566756 U2AF1L5P0DN76 240 aaPredicted RBP21.43■■□□□ 1.02
CMTM3-213ENST00000566756 U2AF1Q01081 240 aaKnown RBP eCLIP21.43■■□□□ 1.02
CMTM3-213ENST00000566756 ACEP12821 1306 aa21.43■■□□□ 1.02
CMTM3-213ENST00000566756 IL16Q14005 1332 aa21.43■■□□□ 1.02
CMTM3-213ENST00000566756 PNPLA6Q8IY17 1366 aa21.42■■□□□ 1.02
CMTM3-213ENST00000566756 USP6P35125 1406 aa21.41■■□□□ 1.02
CMTM3-213ENST00000566756 PLEKHF1Q96S99 279 aa21.41■■□□□ 1.02
CMTM3-213ENST00000566756 USP19O94966 1318 aa21.4■■□□□ 1.02
CMTM3-213ENST00000566756 NFKBIBQ15653 356 aa21.4■■□□□ 1.02
CMTM3-213ENST00000566756 AATKQ6ZMQ8 1374 aa21.4■■□□□ 1.02
CMTM3-213ENST00000566756 SSH2Q76I76 1423 aa21.39■■□□□ 1.02
CMTM3-213ENST00000566756 RWDD1Q9H446 243 aaPredicted RBP21.39■■□□□ 1.02
CMTM3-213ENST00000566756 RLBP1P12271 317 aa21.38■■□□□ 1.01
CMTM3-213ENST00000566756 ZKSCAN2Q63HK3 967 aa21.38■■□□□ 1.01
CMTM3-213ENST00000566756 NME9Q86XW9 330 aa21.38■■□□□ 1.01
CMTM3-213ENST00000566756 PNNQ9H307 717 aaKnown RBP21.38■■□□□ 1.01
CMTM3-213ENST00000566756 ADGRL3Q9HAR2 1447 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms