RNA–Protein interactions for RNA: ENST00000563759.1

LINC01960-201, Transcript of long intergenic non-protein coding RNA 1960, humanhuman

BASIC

Gene LINC01960, Length 1,884 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01960-201ENST00000563759 ATF3P18847 181 aa29.54■■■□□ 2.32
LINC01960-201ENST00000563759 PHF8Q9UPP1 1060 aa29.54■■■□□ 2.32
LINC01960-201ENST00000563759 PNISRQ8TF01 805 aaKnown RBP29.53■■■□□ 2.32
LINC01960-201ENST00000563759 ESCO1Q5FWF5 840 aa29.53■■■□□ 2.32
LINC01960-201ENST00000563759 NME9Q86XW9 330 aa29.53■■■□□ 2.32
LINC01960-201ENST00000563759 CENPBP07199 599 aaPredicted RBP29.52■■■□□ 2.32
LINC01960-201ENST00000563759 TTC21BQ7Z4L5 1316 aa29.52■■■□□ 2.32
LINC01960-201ENST00000563759 C1orf167Q5SNV9 1468 aa29.51■■■□□ 2.31
LINC01960-201ENST00000563759 SSH2Q76I76 1423 aa29.5■■■□□ 2.31
LINC01960-201ENST00000563759 MAP2P11137 1827 aaKnown RBP29.5■■■□□ 2.31
LINC01960-201ENST00000563759 MST1RQ04912 1400 aa29.49■■■□□ 2.31
LINC01960-201ENST00000563759 PIK3C2AO00443 1686 aa29.48■■■□□ 2.31
LINC01960-201ENST00000563759 CADPS2Q86UW7 1296 aa29.48■■■□□ 2.31
LINC01960-201ENST00000563759 TTC21AQ8NDW8 1320 aa29.48■■■□□ 2.31
LINC01960-201ENST00000563759 COG3Q96JB2 828 aa29.46■■■□□ 2.31
LINC01960-201ENST00000563759 HNRNPUQ00839 825 aaKnown RBP eCLIP29.44■■■□□ 2.3
LINC01960-201ENST00000563759 ORAI2Q96SN7 254 aa29.44■■■□□ 2.3
LINC01960-201ENST00000563759 ZRANB1Q9UGI0 708 aa29.43■■■□□ 2.3
LINC01960-201ENST00000563759 OVOS2A0A0J9YW53 1432 aa29.43■■■□□ 2.3
LINC01960-201ENST00000563759 OVOS2Q6IE36 1432 aa29.43■■■□□ 2.3
LINC01960-201ENST00000563759 MTHFSP49914 203 aa29.42■■■□□ 2.3
LINC01960-201ENST00000563759 SHPRHQ149N8 1683 aa29.42■■■□□ 2.3
LINC01960-201ENST00000563759 SCAF1Q9H7N4 1312 aaKnown RBP29.41■■■□□ 2.3
LINC01960-201ENST00000563759 USP54Q70EL1 1684 aa29.41■■■□□ 2.3
LINC01960-201ENST00000563759 WDR43Q15061 677 aaKnown RBP eCLIP29.4■■■□□ 2.3
LINC01960-201ENST00000563759 PSME1Q06323 249 aa29.4■■■□□ 2.3
LINC01960-201ENST00000563759 CFAP53Q96M91 514 aa29.4■■■□□ 2.3
LINC01960-201ENST00000563759 MARF1Q9Y4F3 1742 aaKnown RBP29.39■■■□□ 2.3
LINC01960-201ENST00000563759 PAK3O75914 559 aaPredicted RBP29.38■■■□□ 2.29
LINC01960-201ENST00000563759 FOXO3O43524 673 aa29.36■■■□□ 2.29
LINC01960-201ENST00000563759 TRPM3Q9HCF6 1732 aaPredicted RBP29.36■■■□□ 2.29
LINC01960-201ENST00000563759 AATKQ6ZMQ8 1374 aa29.35■■■□□ 2.29
LINC01960-201ENST00000563759 USP31Q70CQ4 1352 aa29.34■■■□□ 2.29
LINC01960-201ENST00000563759 ABTB2Q8N961 1025 aa29.32■■■□□ 2.28
LINC01960-201ENST00000563759 INSRP06213 1382 aa29.31■■■□□ 2.28
LINC01960-201ENST00000563759 BLMP54132 1417 aaPredicted RBP29.31■■■□□ 2.28
LINC01960-201ENST00000563759 SMG6Q86US8 1419 aaKnown RBP29.31■■■□□ 2.28
LINC01960-201ENST00000563759 LTBP4Q8N2S1 1624 aa29.31■■■□□ 2.28
LINC01960-201ENST00000563759 FBLN1P23142 703 aa29.31■■■□□ 2.28
LINC01960-201ENST00000563759 AEBP2Q6ZN18 517 aaPredicted RBP29.31■■■□□ 2.28
LINC01960-201ENST00000563759 COL3A1P02461 1466 aaPredicted RBP29.3■■■□□ 2.28
LINC01960-201ENST00000563759 NLRP6P59044 892 aa29.3■■■□□ 2.28
LINC01960-201ENST00000563759 ADAMTS8Q9UP79 889 aa29.3■■■□□ 2.28
LINC01960-201ENST00000563759 XPCQ01831 940 aaPredicted RBP29.29■■■□□ 2.28
LINC01960-201ENST00000563759 POLKQ9UBT6 870 aa29.29■■■□□ 2.28
LINC01960-201ENST00000563759 CDK12Q9NYV4 1490 aaPredicted RBP29.29■■■□□ 2.28
LINC01960-201ENST00000563759 PPM1GO15355 546 aaPredicted RBP29.29■■■□□ 2.28
LINC01960-201ENST00000563759 EMILIN1Q9Y6C2 1016 aa29.27■■■□□ 2.28
LINC01960-201ENST00000563759 ALS2Q96Q42 1657 aa29.26■■■□□ 2.27
LINC01960-201ENST00000563759 NUTM2GQ5VZR2 741 aa29.26■■■□□ 2.27
LINC01960-201ENST00000563759 KRT28Q7Z3Y7 464 aa29.26■■■□□ 2.27
LINC01960-201ENST00000563759 SOX12O15370 315 aa29.25■■■□□ 2.27
LINC01960-201ENST00000563759 RRS1Q15050 365 aaKnown RBP29.25■■■□□ 2.27
LINC01960-201ENST00000563759 PNPLA6Q8IY17 1366 aa29.25■■■□□ 2.27
LINC01960-201ENST00000563759 ZBED9Q6R2W3 1325 aa29.25■■■□□ 2.27
LINC01960-201ENST00000563759 NPHP3Q7Z494 1330 aa29.25■■■□□ 2.27
LINC01960-201ENST00000563759 SLAIN2Q9P270 581 aa29.25■■■□□ 2.27
LINC01960-201ENST00000563759 LTN1O94822 1766 aa29.23■■■□□ 2.27
LINC01960-201ENST00000563759 PEAK1Q9H792 1746 aa29.23■■■□□ 2.27
LINC01960-201ENST00000563759 BRINP3Q76B58 766 aa29.22■■■□□ 2.27
LINC01960-201ENST00000563759 NUDCQ9Y266 331 aa29.21■■■□□ 2.27
LINC01960-201ENST00000563759 DDX17Q92841 729 aaKnown RBP29.2■■■□□ 2.26
LINC01960-201ENST00000563759 PXDNQ92626 1479 aa29.2■■■□□ 2.26
LINC01960-201ENST00000563759 SENP3-EIF4A1A0A087X0R7 540 aa29.19■■■□□ 2.26
LINC01960-201ENST00000563759 DIAPH1O60610 1272 aaKnown RBP29.19■■■□□ 2.26
LINC01960-201ENST00000563759 LMOD2Q6P5Q4 547 aa29.19■■■□□ 2.26
LINC01960-201ENST00000563759 NHSL1Q5SYE7 1610 aa29.16■■■□□ 2.26
LINC01960-201ENST00000563759 SBNO1A3KN83 1393 aa29.16■■■□□ 2.26
LINC01960-201ENST00000563759 U2SURPO15042 1029 aaKnown RBP29.16■■■□□ 2.26
LINC01960-201ENST00000563759 U2AF1L5P0DN76 240 aaPredicted RBP29.16■■■□□ 2.26
LINC01960-201ENST00000563759 U2AF1Q01081 240 aaKnown RBP eCLIP29.16■■■□□ 2.26
LINC01960-201ENST00000563759 CCDC146Q8IYE0 955 aa29.15■■■□□ 2.26
LINC01960-201ENST00000563759 SLIT3O75094 1523 aa29.15■■■□□ 2.26
LINC01960-201ENST00000563759 NFAT5O94916 1531 aa29.15■■■□□ 2.26
LINC01960-201ENST00000563759 MAP3K19Q56UN5 1328 aa29.14■■■□□ 2.26
LINC01960-201ENST00000563759 TNS3Q68CZ2 1445 aa29.14■■■□□ 2.26
LINC01960-201ENST00000563759 FLT4P35916 1363 aa29.12■■■□□ 2.25
LINC01960-201ENST00000563759 ROBO1Q9Y6N7 1651 aa29.12■■■□□ 2.25
LINC01960-201ENST00000563759 KCNH5Q8NCM2 988 aa29.11■■■□□ 2.25
LINC01960-201ENST00000563759 PHRF1Q9P1Y6 1649 aaKnown RBP29.11■■■□□ 2.25
LINC01960-201ENST00000563759 SALL2Q9Y467 1007 aaPredicted RBP29.1■■■□□ 2.25
LINC01960-201ENST00000563759 AMPHP49418 695 aa29.09■■■□□ 2.25
LINC01960-201ENST00000563759 USP19O94966 1318 aa29.09■■■□□ 2.25
LINC01960-201ENST00000563759 KIF24Q5T7B8 1368 aa29.08■■■□□ 2.25
LINC01960-201ENST00000563759 PLEKHG5O94827 1062 aa29.08■■■□□ 2.25
LINC01960-201ENST00000563759 CRYBG1Q9Y4K1 1723 aa29.07■■■□□ 2.24
LINC01960-201ENST00000563759 MED1Q15648 1581 aaPredicted RBP29.07■■■□□ 2.24
LINC01960-201ENST00000563759 ARHGEF10O15013 1369 aa29.07■■■□□ 2.24
LINC01960-201ENST00000563759 IL13P35225 146 aa29.06■■■□□ 2.24
LINC01960-201ENST00000563759 RUNDC1Q96C34 613 aa29.06■■■□□ 2.24
LINC01960-201ENST00000563759 SPATA31A3Q5VYP0 1347 aa29.06■■■□□ 2.24
LINC01960-201ENST00000563759 RTL1A6NKG5 1358 aa29.06■■■□□ 2.24
LINC01960-201ENST00000563759 HSP90AB2PQ58FF8 381 aa29.05■■■□□ 2.24
LINC01960-201ENST00000563759 RGPD1P0DJD0 1748 aa29.05■■■□□ 2.24
LINC01960-201ENST00000563759 IQSEC2Q5JU85 1478 aa29.04■■■□□ 2.24
LINC01960-201ENST00000563759 SOS2Q07890 1332 aaPredicted RBP29.04■■■□□ 2.24
LINC01960-201ENST00000563759 GCP02774 474 aa29.04■■■□□ 2.24
LINC01960-201ENST00000563759 APAF1O14727 1248 aa29.03■■■□□ 2.24
LINC01960-201ENST00000563759 EIF4A2Q14240 407 aaKnown RBP29.02■■■□□ 2.24
LINC01960-201ENST00000563759 HOXC9P31274 260 aa29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms