RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CDCA8Q53HL2 280 aa7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 NOM1Q5C9Z4 860 aaKnown RBP7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 PHOX2BQ99453 314 aa7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 IL21Q9HBE4 155 aa7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 GPCPD1Q9NPB8 672 aa7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 PPP1R1BQ9UD71 204 aaPredicted RBP7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 GNEQ9Y223 722 aaKnown RBP7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 CLK2P49760 499 aaKnown RBP7.52□□□□□ -1.21
VPS35P1-201ENST00000563400 APLP1P51693 650 aa7.52□□□□□ -1.21
VPS35P1-201ENST00000563400 PCDHB3Q9Y5E6 796 aa7.52□□□□□ -1.21
VPS35P1-201ENST00000563400 HMGXB3Q12766 1538 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 CFHP08603 1231 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 RDH13Q8NBN7 331 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 MTRQ99707 1265 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 PEG3Q9GZU2 1588 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 DDX11L8A8MPP1 907 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 TMEM259Q4ZIN3 620 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 ANKRD13AQ8IZ07 590 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 PPP1R12CQ9BZL4 782 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 BRPF3Q9ULD4 1205 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 RSF1Q96T23 1441 aaPredicted RBP7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 ACTN4O43707 911 aaKnown RBP7.49□□□□□ -1.21
VPS35P1-201ENST00000563400 SIRT1Q96EB6 747 aa7.49□□□□□ -1.21
VPS35P1-201ENST00000563400 A0A0G2JS52 829 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 RGS20O76081 388 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 LMOD1P29536 600 aaPredicted RBP7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 TJAP1Q5JTD0 557 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 ZNF592Q92610 1267 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 C8orf37Q96NL8 207 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 BCL2L13Q9BXK5 485 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 ANKRD62A6NC57 917 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 COPS2P61201 443 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 PALM3A6NDB9 673 aaPredicted RBP7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 SLC10A3P09131 477 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 GIPC2Q8TF65 315 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 FAM217BQ9NTX9 383 aaPredicted RBP7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 LIMD1Q9UGP4 676 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 MROH2BQ7Z745 1585 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 NR1I2O75469 434 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 NCLP19338 710 aaKnown RBP7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 GGCXP38435 758 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 GRIPAP1Q4V328 841 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 GIMAP6Q6P9H5 292 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 NLRP7Q8WX94 980 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 PPP2R2DQ66LE6 453 aa7.45□□□□□ -1.22
VPS35P1-201ENST00000563400 ZPR1O75312 459 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 ATG7O95352 703 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 TMED8Q6PL24 325 aaPredicted RBP7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 ZNF662Q6ZS27 426 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 UBXN4Q92575 508 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 HIRIP3Q9BW71 556 aaPredicted RBP7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 TBC1D2Q9BYX2 928 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 ZC3H4Q9UPT8 1303 aaKnown RBP7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 ZC3H6P61129 1189 aaKnown RBP7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 BLOC1S3Q6QNY0 202 aa7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 TFIP11Q9UBB9 837 aaKnown RBP7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 PDS5BQ9NTI5 1447 aa7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 ERCC3P19447 782 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 ATP6V1AP38606 617 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 GCGRP47871 477 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 NAALADL2Q58DX5 795 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 ZNF516Q92618 1163 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 PSMD1Q99460 953 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 PRM3Q9NNZ6 103 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 PHLDB3Q6NSJ2 640 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 CCER1Q8TC90 406 aaPredicted RBP7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 MARCH6O60337 910 aa7.41□□□□□ -1.22
VPS35P1-201ENST00000563400 NOL8Q76FK4 1167 aaKnown RBP7.41□□□□□ -1.22
VPS35P1-201ENST00000563400 ZNF526Q8TF50 670 aaPredicted RBP7.41□□□□□ -1.22
VPS35P1-201ENST00000563400 UCN2Q96RP3 112 aa7.41□□□□□ -1.22
VPS35P1-201ENST00000563400 TOP2AP11388 1531 aaKnown RBP7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 CD46P15529 392 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 USP46P62068 366 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 FUT2Q10981 343 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 TAF7LQ5H9L4 462 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 CC2D2BQ6DHV5 1058 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 VAC14Q08AM6 782 aa7.39□□□□□ -1.23
VPS35P1-201ENST00000563400 SCUBE3Q8IX30 993 aa7.39□□□□□ -1.23
VPS35P1-201ENST00000563400 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.39□□□□□ -1.23
VPS35P1-201ENST00000563400 AP1G2O75843 785 aa7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 TAGLNQ01995 201 aaKnown RBP7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 PUS10Q3MIT2 529 aaKnown RBP7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 PPP1R18Q6NYC8 613 aa7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 ERCC6Q03468 1493 aa7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 SOCS7O14512 581 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 MORN1Q5T089 497 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 DPH6Q7L8W6 267 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 RIC3Q7Z5B4 369 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 NUTM1Q86Y26 1132 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 NKX2-3Q8TAU0 364 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 ALG2Q9H553 416 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 LAMC3Q9Y6N6 1575 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 ADH1BP00325 375 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 CSPP1Q1MSJ5 1256 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 Q3C1V9 767 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 B4GALNT3Q6L9W6 998 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 NPAS4Q8IUM7 802 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 GJD4Q96KN9 370 aaPredicted RBP7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 WIZO95785 1651 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms