RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ANKRD24Q8TF21 1146 aa11.65□□□□□ -0.54
VPS39-205ENST00000562258 GCP02774 474 aa11.65□□□□□ -0.54
VPS39-205ENST00000562258 PPP4R2Q9NY27 417 aa11.65□□□□□ -0.54
VPS39-205ENST00000562258 NAP1L2Q9ULW6 460 aaPredicted RBP11.65□□□□□ -0.54
VPS39-205ENST00000562258 KDM6BO15054 1643 aa11.65□□□□□ -0.55
VPS39-205ENST00000562258 DNMT1P26358 1616 aaKnown RBP11.65□□□□□ -0.55
VPS39-205ENST00000562258 MYO5CQ9NQX4 1742 aa11.65□□□□□ -0.55
VPS39-205ENST00000562258 EXOSC9Q06265 439 aaKnown RBP11.64□□□□□ -0.55
VPS39-205ENST00000562258 SAMD9LQ8IVG5 1584 aa11.64□□□□□ -0.55
VPS39-205ENST00000562258 ADCY10Q96PN6 1610 aa11.64□□□□□ -0.55
VPS39-205ENST00000562258 MLH3Q9UHC1 1453 aa11.64□□□□□ -0.55
VPS39-205ENST00000562258 BICDL1Q6ZP65 573 aa11.64□□□□□ -0.55
VPS39-205ENST00000562258 ACSBG1Q96GR2 724 aa11.64□□□□□ -0.55
VPS39-205ENST00000562258 FGD1P98174 961 aa11.63□□□□□ -0.55
VPS39-205ENST00000562258 HDGFL1Q5TGJ6 251 aa11.63□□□□□ -0.55
VPS39-205ENST00000562258 DDX58O95786 925 aaKnown RBP11.63□□□□□ -0.55
VPS39-205ENST00000562258 ZKSCAN2Q63HK3 967 aa11.63□□□□□ -0.55
VPS39-205ENST00000562258 YTHDC2Q9H6S0 1430 aaKnown RBP11.63□□□□□ -0.55
VPS39-205ENST00000562258 TMEM94Q12767 1356 aa11.63□□□□□ -0.55
VPS39-205ENST00000562258 PPIP5K1Q6PFW1 1433 aa11.63□□□□□ -0.55
VPS39-205ENST00000562258 TESK2Q96S53 571 aa11.63□□□□□ -0.55
VPS39-205ENST00000562258 BTG4Q9NY30 223 aa11.63□□□□□ -0.55
VPS39-205ENST00000562258 TPRNQ4KMQ1 711 aa11.62□□□□□ -0.55
VPS39-205ENST00000562258 PNISRQ8TF01 805 aaKnown RBP11.62□□□□□ -0.55
VPS39-205ENST00000562258 PRAG1Q86YV5 1406 aa11.62□□□□□ -0.55
VPS39-205ENST00000562258 BTBD11A6QL63 1104 aa11.61□□□□□ -0.55
VPS39-205ENST00000562258 TWISTNBQ3B726 338 aaPredicted RBP11.6□□□□□ -0.55
VPS39-205ENST00000562258 CASC1Q6TDU7 716 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 PLEKHH1Q9ULM0 1364 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 BRD4O60885 1362 aaPredicted RBP11.6□□□□□ -0.55
VPS39-205ENST00000562258 FCHSD2O94868 740 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 TMOD3Q9NYL9 352 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 ADGRL2O95490 1459 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 SLC4A2P04920 1241 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 AEBP1Q8IUX7 1158 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 ABCC1P33527 1531 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 MAGI2Q86UL8 1455 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 METP08581 1390 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 TRIM6-TRIM34B2RNG4 842 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 HMMRO75330 724 aa11.6□□□□□ -0.55
VPS39-205ENST00000562258 FAM83GA6ND36 823 aa11.59□□□□□ -0.55
VPS39-205ENST00000562258 CARD14Q9BXL6 1004 aa11.59□□□□□ -0.55
VPS39-205ENST00000562258 RWDD1Q9H446 243 aaPredicted RBP11.59□□□□□ -0.55
VPS39-205ENST00000562258 HDAC5Q9UQL6 1122 aa11.59□□□□□ -0.55
VPS39-205ENST00000562258 UGGT1Q9NYU2 1555 aa11.59□□□□□ -0.55
VPS39-205ENST00000562258 GNAT3A8MTJ3 354 aa11.59□□□□□ -0.55
VPS39-205ENST00000562258 TMPOP42166 694 aaKnown RBP11.59□□□□□ -0.55
VPS39-205ENST00000562258 PANK1Q8TE04 598 aa11.59□□□□□ -0.55
VPS39-205ENST00000562258 CCDC85AQ96PX6 553 aaPredicted RBP11.59□□□□□ -0.55
VPS39-205ENST00000562258 FBXW7Q969H0 707 aa11.58□□□□□ -0.56
VPS39-205ENST00000562258 ZBED9Q6R2W3 1325 aa11.58□□□□□ -0.56
VPS39-205ENST00000562258 EXOC6Q8TAG9 804 aa11.57□□□□□ -0.56
VPS39-205ENST00000562258 HSP90AB1P08238 724 aaKnown RBP11.57□□□□□ -0.56
VPS39-205ENST00000562258 DDB1Q16531 1140 aa11.57□□□□□ -0.56
VPS39-205ENST00000562258 NFE2L2Q16236 605 aa11.57□□□□□ -0.56
VPS39-205ENST00000562258 DZIP1LQ8IYY4 767 aaKnown RBP11.57□□□□□ -0.56
VPS39-205ENST00000562258 BCL11BQ9C0K0 894 aaPredicted RBP11.57□□□□□ -0.56
VPS39-205ENST00000562258 CCDC30Q5VVM6 783 aa11.56□□□□□ -0.56
VPS39-205ENST00000562258 CRBNQ96SW2 442 aa11.56□□□□□ -0.56
VPS39-205ENST00000562258 POLKQ9UBT6 870 aa11.56□□□□□ -0.56
VPS39-205ENST00000562258 WWC3Q9ULE0 1092 aa11.56□□□□□ -0.56
VPS39-205ENST00000562258 ANKRD45Q5TZF3 282 aa11.56□□□□□ -0.56
VPS39-205ENST00000562258 API5Q9BZZ5 524 aaKnown RBP11.56□□□□□ -0.56
VPS39-205ENST00000562258 SLC39A6Q13433 755 aa11.55□□□□□ -0.56
VPS39-205ENST00000562258 MAP3K19Q56UN5 1328 aa11.55□□□□□ -0.56
VPS39-205ENST00000562258 BCAR3O75815 825 aa11.54□□□□□ -0.56
VPS39-205ENST00000562258 ANXA1P04083 346 aa11.54□□□□□ -0.56
VPS39-205ENST00000562258 FAM98CQ17RN3 349 aaKnown RBP11.54□□□□□ -0.56
VPS39-205ENST00000562258 AMER1Q5JTC6 1135 aaPredicted RBP11.54□□□□□ -0.56
VPS39-205ENST00000562258 COL17A1Q9UMD9 1497 aaPredicted RBP11.54□□□□□ -0.56
VPS39-205ENST00000562258 KIF6Q6ZMV9 814 aa11.54□□□□□ -0.56
VPS39-205ENST00000562258 VPS37DQ86XT2 251 aa11.54□□□□□ -0.56
VPS39-205ENST00000562258 NPHP4O75161 1426 aaPredicted RBP11.54□□□□□ -0.56
VPS39-205ENST00000562258 ZCRB1Q8TBF4 217 aaKnown RBP11.54□□□□□ -0.56
VPS39-205ENST00000562258 TTC21AQ8NDW8 1320 aa11.54□□□□□ -0.56
VPS39-205ENST00000562258 IFNL2Q8IZJ0 200 aa11.53□□□□□ -0.56
VPS39-205ENST00000562258 PHF14O94880 888 aa11.53□□□□□ -0.56
VPS39-205ENST00000562258 AMOTQ4VCS5 1084 aa11.53□□□□□ -0.56
VPS39-205ENST00000562258 NEUROD6Q96NK8 337 aa11.53□□□□□ -0.56
VPS39-205ENST00000562258 MAST1Q9Y2H9 1570 aa11.53□□□□□ -0.56
VPS39-205ENST00000562258 EIF4A2Q14240 407 aaKnown RBP11.53□□□□□ -0.56
VPS39-205ENST00000562258 A0A1W2PP64 1363 aa11.53□□□□□ -0.56
VPS39-205ENST00000562258 PIP4K2AP48426 406 aaPredicted RBP11.53□□□□□ -0.56
VPS39-205ENST00000562258 C1orf115Q9H7X2 142 aa11.53□□□□□ -0.56
VPS39-205ENST00000562258 HECW2Q9P2P5 1572 aa11.52□□□□□ -0.56
VPS39-205ENST00000562258 WWC1Q8IX03 1113 aa11.52□□□□□ -0.56
VPS39-205ENST00000562258 TOMM22Q9NS69 142 aa11.52□□□□□ -0.56
VPS39-205ENST00000562258 ANKRD36BQ8N2N9 1353 aa11.52□□□□□ -0.57
VPS39-205ENST00000562258 TULP1O00294 542 aaPredicted RBP11.52□□□□□ -0.57
VPS39-205ENST00000562258 STARD3NLO95772 234 aa11.52□□□□□ -0.57
VPS39-205ENST00000562258 RRP1P56182 461 aaKnown RBP11.52□□□□□ -0.57
VPS39-205ENST00000562258 KIAA1211Q6ZU35 1233 aa11.52□□□□□ -0.57
VPS39-205ENST00000562258 RILPL2Q969X0 211 aa11.52□□□□□ -0.57
VPS39-205ENST00000562258 UBTFL1P0CB47 393 aaPredicted RBP11.51□□□□□ -0.57
VPS39-205ENST00000562258 TAF7Q15545 349 aaPredicted RBP11.51□□□□□ -0.57
VPS39-205ENST00000562258 EYA1Q99502 592 aa11.51□□□□□ -0.57
VPS39-205ENST00000562258 USP21Q9UK80 565 aa11.51□□□□□ -0.57
VPS39-205ENST00000562258 ARHGEF5Q12774 1597 aa11.51□□□□□ -0.57
VPS39-205ENST00000562258 PREX2Q70Z35 1606 aa11.51□□□□□ -0.57
VPS39-205ENST00000562258 FAM182BQ5T319 152 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms