RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 CDK19Q9BWU1 502 aa13.33□□□□□ -0.28
HDDC3-204ENST00000559834 SPATA31A5Q5VU36 1347 aa13.33□□□□□ -0.28
HDDC3-204ENST00000559834 SPATA31A7Q8IWB4 1347 aa13.33□□□□□ -0.28
HDDC3-204ENST00000559834 CCDC61Q9Y6R9 512 aa13.32□□□□□ -0.28
HDDC3-204ENST00000559834 PLCH1Q4KWH8 1693 aa13.31□□□□□ -0.28
HDDC3-204ENST00000559834 BRWD3Q6RI45 1802 aa13.31□□□□□ -0.28
HDDC3-204ENST00000559834 EVA1CP58658 441 aa13.3□□□□□ -0.28
HDDC3-204ENST00000559834 NBPF8Q3BBV2 869 aa13.3□□□□□ -0.28
HDDC3-204ENST00000559834 PLEKHG3A1L390 1219 aa13.29□□□□□ -0.28
HDDC3-204ENST00000559834 ZC3H6P61129 1189 aaKnown RBP13.29□□□□□ -0.28
HDDC3-204ENST00000559834 STRN4Q9NRL3 753 aa13.29□□□□□ -0.28
HDDC3-204ENST00000559834 COL14A1Q05707 1796 aaKnown RBP13.29□□□□□ -0.28
HDDC3-204ENST00000559834 TRPM3Q9HCF6 1732 aaPredicted RBP13.28□□□□□ -0.28
HDDC3-204ENST00000559834 CHRNA2Q15822 529 aa13.28□□□□□ -0.28
HDDC3-204ENST00000559834 FAM196AQ6ZSG2 479 aa13.28□□□□□ -0.28
HDDC3-204ENST00000559834 ABTB2Q8N961 1025 aa13.28□□□□□ -0.28
HDDC3-204ENST00000559834 ACEP12821 1306 aa13.28□□□□□ -0.28
HDDC3-204ENST00000559834 SPATA31A1Q5TZJ5 1347 aa13.28□□□□□ -0.28
HDDC3-204ENST00000559834 KIAA0232Q92628 1395 aa13.28□□□□□ -0.28
HDDC3-204ENST00000559834 ALS2Q96Q42 1657 aa13.28□□□□□ -0.28
HDDC3-204ENST00000559834 ABCA3Q99758 1704 aa13.27□□□□□ -0.28
HDDC3-204ENST00000559834 EN1Q05925 392 aaPredicted RBP13.27□□□□□ -0.29
HDDC3-204ENST00000559834 FAM182BQ5T319 152 aa13.27□□□□□ -0.29
HDDC3-204ENST00000559834 NUTM2GQ5VZR2 741 aa13.27□□□□□ -0.29
HDDC3-204ENST00000559834 POLR3AO14802 1390 aaPredicted RBP13.26□□□□□ -0.29
HDDC3-204ENST00000559834 SRPK2P78362 688 aaKnown RBP13.26□□□□□ -0.29
HDDC3-204ENST00000559834 NLRP13Q86W25 1043 aa13.26□□□□□ -0.29
HDDC3-204ENST00000559834 ATP7BP35670 1465 aa13.25□□□□□ -0.29
HDDC3-204ENST00000559834 PSDA5PKW4 1024 aaPredicted RBP13.25□□□□□ -0.29
HDDC3-204ENST00000559834 PDE3BQ13370 1112 aa13.25□□□□□ -0.29
HDDC3-204ENST00000559834 NBPF1Q3BBV0 1214 aa13.25□□□□□ -0.29
HDDC3-204ENST00000559834 BARGINQ6ZT62 677 aa13.25□□□□□ -0.29
HDDC3-204ENST00000559834 USP35Q9P2H5 1018 aa13.25□□□□□ -0.29
HDDC3-204ENST00000559834 NRAPQ86VF7 1730 aa13.24□□□□□ -0.29
HDDC3-204ENST00000559834 EP400Q96L91 3159 aa13.24□□□□□ -0.29
HDDC3-204ENST00000559834 CENPJQ9HC77 1338 aaPredicted RBP13.23□□□□□ -0.29
HDDC3-204ENST00000559834 ITSN1Q15811 1721 aa13.22□□□□□ -0.29
HDDC3-204ENST00000559834 TRIM37O94972 964 aa13.22□□□□□ -0.29
HDDC3-204ENST00000559834 APBA3O96018 575 aa13.22□□□□□ -0.29
HDDC3-204ENST00000559834 GCP02774 474 aa13.22□□□□□ -0.29
HDDC3-204ENST00000559834 TCP11L2Q8N4U5 519 aa13.22□□□□□ -0.29
HDDC3-204ENST00000559834 THRAP3Q9Y2W1 955 aaKnown RBP13.22□□□□□ -0.29
HDDC3-204ENST00000559834 ARHGEF28Q8N1W1 1705 aaKnown RBP13.22□□□□□ -0.29
HDDC3-204ENST00000559834 BRD4O60885 1362 aaPredicted RBP13.21□□□□□ -0.29
HDDC3-204ENST00000559834 C11orf95C9JLR9 678 aaPredicted RBP13.21□□□□□ -0.29
HDDC3-204ENST00000559834 EZH2Q15910 746 aaKnown RBP13.21□□□□□ -0.29
HDDC3-204ENST00000559834 LARP1Q6PKG0 1096 aaKnown RBP13.21□□□□□ -0.29
HDDC3-204ENST00000559834 CABP2Q9NPB3 220 aa13.21□□□□□ -0.29
HDDC3-204ENST00000559834 CPDO75976 1380 aa13.2□□□□□ -0.3
HDDC3-204ENST00000559834 R3HDM1Q15032 1099 aaKnown RBP13.2□□□□□ -0.3
HDDC3-204ENST00000559834 CAMKK2Q96RR4 588 aa13.2□□□□□ -0.3
HDDC3-204ENST00000559834 DISP2A7MBM2 1401 aa13.2□□□□□ -0.3
HDDC3-204ENST00000559834 USP19O94966 1318 aa13.19□□□□□ -0.3
HDDC3-204ENST00000559834 NLRP6P59044 892 aa13.19□□□□□ -0.3
HDDC3-204ENST00000559834 CABP1Q9NZU7 370 aa13.19□□□□□ -0.3
HDDC3-204ENST00000559834 PPIP5K1Q6PFW1 1433 aa13.19□□□□□ -0.3
HDDC3-204ENST00000559834 SSH2Q76I76 1423 aa13.19□□□□□ -0.3
HDDC3-204ENST00000559834 KIAA1210Q9ULL0 1709 aa13.19□□□□□ -0.3
HDDC3-204ENST00000559834 PARD3Q8TEW0 1356 aa13.19□□□□□ -0.3
HDDC3-204ENST00000559834 NBPF14Q5TI25 921 aa13.18□□□□□ -0.3
HDDC3-204ENST00000559834 RGPD1P0DJD0 1748 aa13.18□□□□□ -0.3
HDDC3-204ENST00000559834 CRYBG1Q9Y4K1 1723 aa13.18□□□□□ -0.3
HDDC3-204ENST00000559834 THSD7AQ9UPZ6 1657 aa13.18□□□□□ -0.3
HDDC3-204ENST00000559834 L3MBTL2Q969R5 705 aa13.17□□□□□ -0.3
HDDC3-204ENST00000559834 EVC2Q86UK5 1308 aa13.16□□□□□ -0.3
HDDC3-204ENST00000559834 CAMTA1Q9Y6Y1 1673 aa13.16□□□□□ -0.3
HDDC3-204ENST00000559834 ZBTB7CA1YPR0 619 aa13.16□□□□□ -0.3
HDDC3-204ENST00000559834 ZNF692Q9BU19 519 aaPredicted RBP13.16□□□□□ -0.3
HDDC3-204ENST00000559834 LRP5O75197 1615 aa13.15□□□□□ -0.3
HDDC3-204ENST00000559834 SRCAPQ6ZRS2 3230 aa13.15□□□□□ -0.31
HDDC3-204ENST00000559834 PHRF1Q9P1Y6 1649 aaKnown RBP13.14□□□□□ -0.31
HDDC3-204ENST00000559834 TOPAZ1Q8N9V7 1692 aa13.14□□□□□ -0.31
HDDC3-204ENST00000559834 AATKQ6ZMQ8 1374 aa13.13□□□□□ -0.31
HDDC3-204ENST00000559834 TOM1L2Q6ZVM7 507 aa13.13□□□□□ -0.31
HDDC3-204ENST00000559834 KCNH5Q8NCM2 988 aa13.13□□□□□ -0.31
HDDC3-204ENST00000559834 USP6P35125 1406 aa13.13□□□□□ -0.31
HDDC3-204ENST00000559834 CRB1P82279 1406 aa13.13□□□□□ -0.31
HDDC3-204ENST00000559834 CDCA7Q9BWT1 371 aaPredicted RBP13.12□□□□□ -0.31
HDDC3-204ENST00000559834 NRKQ7Z2Y5 1582 aa13.11□□□□□ -0.31
HDDC3-204ENST00000559834 NEUROD1Q13562 356 aa13.11□□□□□ -0.31
HDDC3-204ENST00000559834 DDB1Q16531 1140 aa13.11□□□□□ -0.31
HDDC3-204ENST00000559834 COL5A2P05997 1499 aaPredicted RBP13.1□□□□□ -0.31
HDDC3-204ENST00000559834 SIN3AQ96ST3 1273 aa13.1□□□□□ -0.31
HDDC3-204ENST00000559834 ROCK2O75116 1388 aaKnown RBP13.09□□□□□ -0.31
HDDC3-204ENST00000559834 PLSCR1O15162 318 aa13.09□□□□□ -0.31
HDDC3-204ENST00000559834 CSB-PGBD3P0DP91 1061 aa13.09□□□□□ -0.31
HDDC3-204ENST00000559834 ARHGEF25Q86VW2 580 aa13.09□□□□□ -0.31
HDDC3-204ENST00000559834 TNS1Q9HBL0 1735 aaKnown RBP13.09□□□□□ -0.31
HDDC3-204ENST00000559834 TTC21BQ7Z4L5 1316 aa13.09□□□□□ -0.31
HDDC3-204ENST00000559834 TTC21AQ8NDW8 1320 aa13.09□□□□□ -0.31
HDDC3-204ENST00000559834 LMO7Q8WWI1 1683 aa13.08□□□□□ -0.31
HDDC3-204ENST00000559834 BCL11BQ9C0K0 894 aaPredicted RBP13.08□□□□□ -0.32
HDDC3-204ENST00000559834 SPON1Q9HCB6 807 aa13.08□□□□□ -0.32
HDDC3-204ENST00000559834 AXIN2Q9Y2T1 843 aa13.08□□□□□ -0.32
HDDC3-204ENST00000559834 WDR17Q8IZU2 1322 aa13.08□□□□□ -0.32
HDDC3-204ENST00000559834 OVOS2A0A0G2JMS6 1433 aa13.07□□□□□ -0.32
HDDC3-204ENST00000559834 OVOS2A0A0J9YW53 1432 aa13.07□□□□□ -0.32
HDDC3-204ENST00000559834 OVOS2Q6IE36 1432 aa13.07□□□□□ -0.32
HDDC3-204ENST00000559834 EXOC5O00471 708 aa13.07□□□□□ -0.32
HDDC3-204ENST00000559834 CARD10Q9BWT7 1032 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms