RNA–Protein interactions for RNA: ENST00000558955.2

PKNOX1-208, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 629 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-208ENST00000558955 PPIP5K1Q6PFW1 1433 aa17.78■□□□□ 0.44
PKNOX1-208ENST00000558955 ABCA3Q99758 1704 aa17.78■□□□□ 0.44
PKNOX1-208ENST00000558955 EVC2Q86UK5 1308 aa17.77■□□□□ 0.44
PKNOX1-208ENST00000558955 BCL9LQ86UU0 1499 aa17.76■□□□□ 0.43
PKNOX1-208ENST00000558955 RBM6P78332 1123 aaKnown RBP17.75■□□□□ 0.43
PKNOX1-208ENST00000558955 CABP1Q9NZU7 370 aa17.75■□□□□ 0.43
PKNOX1-208ENST00000558955 TRPC5Q9UL62 973 aaPredicted RBP17.75■□□□□ 0.43
PKNOX1-208ENST00000558955 ATRNO75882 1429 aa17.74■□□□□ 0.43
PKNOX1-208ENST00000558955 SLIT2O94813 1529 aa17.73■□□□□ 0.43
PKNOX1-208ENST00000558955 NUTM2GQ5VZR2 741 aa17.73■□□□□ 0.43
PKNOX1-208ENST00000558955 CDK12Q9NYV4 1490 aaPredicted RBP17.73■□□□□ 0.43
PKNOX1-208ENST00000558955 CLSPNQ9HAW4 1339 aa17.72■□□□□ 0.43
PKNOX1-208ENST00000558955 FAM83GA6ND36 823 aa17.71■□□□□ 0.43
PKNOX1-208ENST00000558955 UNC5CLQ8IV45 518 aa17.71■□□□□ 0.43
PKNOX1-208ENST00000558955 CRYBG1Q9Y4K1 1723 aa17.71■□□□□ 0.43
PKNOX1-208ENST00000558955 RGS12O14924 1447 aa17.71■□□□□ 0.43
PKNOX1-208ENST00000558955 SBNO2Q9Y2G9 1366 aa17.7■□□□□ 0.42
PKNOX1-208ENST00000558955 PLCH1Q4KWH8 1693 aa17.68■□□□□ 0.42
PKNOX1-208ENST00000558955 USP6P35125 1406 aa17.68■□□□□ 0.42
PKNOX1-208ENST00000558955 ABTB2Q8N961 1025 aa17.68■□□□□ 0.42
PKNOX1-208ENST00000558955 GJD4Q96KN9 370 aaPredicted RBP17.68■□□□□ 0.42
PKNOX1-208ENST00000558955 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.68■□□□□ 0.42
PKNOX1-208ENST00000558955 CCER1Q8TC90 406 aaPredicted RBP17.67■□□□□ 0.42
PKNOX1-208ENST00000558955 ATAD2Q6PL18 1390 aa17.66■□□□□ 0.42
PKNOX1-208ENST00000558955 PHRF1Q9P1Y6 1649 aaKnown RBP17.66■□□□□ 0.42
PKNOX1-208ENST00000558955 ST20-MTHFSA0A0A6YYL1 179 aa17.66■□□□□ 0.42
PKNOX1-208ENST00000558955 NWD2Q9ULI1 1742 aa17.66■□□□□ 0.42
PKNOX1-208ENST00000558955 TESK2Q96S53 571 aa17.65■□□□□ 0.42
PKNOX1-208ENST00000558955 TIMELESSQ9UNS1 1208 aa17.65■□□□□ 0.42
PKNOX1-208ENST00000558955 SSH2Q76I76 1423 aa17.64■□□□□ 0.42
PKNOX1-208ENST00000558955 ZC3H6P61129 1189 aaKnown RBP17.64■□□□□ 0.41
PKNOX1-208ENST00000558955 PRDM11Q9NQV5 511 aa17.64■□□□□ 0.41
PKNOX1-208ENST00000558955 BTG4Q9NY30 223 aa17.64■□□□□ 0.41
PKNOX1-208ENST00000558955 GLI3P10071 1580 aa17.64■□□□□ 0.41
PKNOX1-208ENST00000558955 BRD4O60885 1362 aaPredicted RBP17.64■□□□□ 0.41
PKNOX1-208ENST00000558955 KIAA0232Q92628 1395 aa17.64■□□□□ 0.41
PKNOX1-208ENST00000558955 COL14A1Q05707 1796 aaKnown RBP17.63■□□□□ 0.41
PKNOX1-208ENST00000558955 CHRNA2Q15822 529 aa17.63■□□□□ 0.41
PKNOX1-208ENST00000558955 VPS72Q15906 364 aa17.63■□□□□ 0.41
PKNOX1-208ENST00000558955 USP19O94966 1318 aa17.63■□□□□ 0.41
PKNOX1-208ENST00000558955 NRAPQ86VF7 1730 aa17.62■□□□□ 0.41
PKNOX1-208ENST00000558955 AKAP12Q02952 1782 aa17.62■□□□□ 0.41
PKNOX1-208ENST00000558955 NLRP13Q86W25 1043 aa17.62■□□□□ 0.41
PKNOX1-208ENST00000558955 UPF1Q92900 1129 aaKnown RBP eCLIP17.62■□□□□ 0.41
PKNOX1-208ENST00000558955 ZNF692Q9BU19 519 aaPredicted RBP17.62■□□□□ 0.41
PKNOX1-208ENST00000558955 CCDC9Q9Y3X0 531 aaKnown RBP17.62■□□□□ 0.41
PKNOX1-208ENST00000558955 USP47Q96K76 1375 aa17.62■□□□□ 0.41
PKNOX1-208ENST00000558955 CPSF1Q10570 1443 aaKnown RBP17.62■□□□□ 0.41
PKNOX1-208ENST00000558955 NLRP6P59044 892 aa17.61■□□□□ 0.41
PKNOX1-208ENST00000558955 TMC1Q8TDI8 760 aa17.61■□□□□ 0.41
PKNOX1-208ENST00000558955 NRKQ7Z2Y5 1582 aa17.61■□□□□ 0.41
PKNOX1-208ENST00000558955 GCP02774 474 aa17.6■□□□□ 0.41
PKNOX1-208ENST00000558955 SLC12A5Q9H2X9 1139 aa17.6■□□□□ 0.41
PKNOX1-208ENST00000558955 TTC21BQ7Z4L5 1316 aa17.6■□□□□ 0.41
PKNOX1-208ENST00000558955 KTN1Q86UP2 1357 aaKnown RBP17.6■□□□□ 0.41
PKNOX1-208ENST00000558955 PIK3C2AO00443 1686 aa17.6■□□□□ 0.41
PKNOX1-208ENST00000558955 CD163L1Q9NR16 1453 aa17.59■□□□□ 0.41
PKNOX1-208ENST00000558955 PUS7Q96PZ0 661 aaKnown RBP17.57■□□□□ 0.4
PKNOX1-208ENST00000558955 CPDO75976 1380 aa17.56■□□□□ 0.4
PKNOX1-208ENST00000558955 MON2Q7Z3U7 1717 aa17.56■□□□□ 0.4
PKNOX1-208ENST00000558955 TTC21AQ8NDW8 1320 aa17.55■□□□□ 0.4
PKNOX1-208ENST00000558955 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.55■□□□□ 0.4
PKNOX1-208ENST00000558955 SEPT12Q8IYM1 358 aa17.55■□□□□ 0.4
PKNOX1-208ENST00000558955 STRN4Q9NRL3 753 aa17.55■□□□□ 0.4
PKNOX1-208ENST00000558955 SLIT3O75094 1523 aa17.55■□□□□ 0.4
PKNOX1-208ENST00000558955 SPATA31A5Q5VU36 1347 aa17.54■□□□□ 0.4
PKNOX1-208ENST00000558955 SPATA31A7Q8IWB4 1347 aa17.54■□□□□ 0.4
PKNOX1-208ENST00000558955 ZBTB7CA1YPR0 619 aa17.54■□□□□ 0.4
PKNOX1-208ENST00000558955 ONECUT3O60422 494 aaPredicted RBP17.54■□□□□ 0.4
PKNOX1-208ENST00000558955 SLC24A1O60721 1099 aa17.54■□□□□ 0.4
PKNOX1-208ENST00000558955 FAM98CQ17RN3 349 aaKnown RBP17.54■□□□□ 0.4
PKNOX1-208ENST00000558955 HDGFL2Q7Z4V5 671 aaPredicted RBP17.54■□□□□ 0.4
PKNOX1-208ENST00000558955 ZRANB1Q9UGI0 708 aa17.54■□□□□ 0.4
PKNOX1-208ENST00000558955 CAMTA1Q9Y6Y1 1673 aa17.54■□□□□ 0.4
PKNOX1-208ENST00000558955 A0A1W2PP64 1363 aa17.53■□□□□ 0.4
PKNOX1-208ENST00000558955 TMF1P82094 1093 aa17.53■□□□□ 0.4
PKNOX1-208ENST00000558955 LMO7Q8WWI1 1683 aa17.52■□□□□ 0.4
PKNOX1-208ENST00000558955 BRWD3Q6RI45 1802 aa17.52■□□□□ 0.4
PKNOX1-208ENST00000558955 SOX12O15370 315 aa17.52■□□□□ 0.4
PKNOX1-208ENST00000558955 EVA1CP58658 441 aa17.52■□□□□ 0.4
PKNOX1-208ENST00000558955 TERF2IPQ9NYB0 399 aa17.52■□□□□ 0.4
PKNOX1-208ENST00000558955 A0A0G2JS52 829 aa17.51■□□□□ 0.39
PKNOX1-208ENST00000558955 MYT1Q01538 1121 aa17.51■□□□□ 0.39
PKNOX1-208ENST00000558955 NME9Q86XW9 330 aa17.51■□□□□ 0.39
PKNOX1-208ENST00000558955 SPATA31A1Q5TZJ5 1347 aa17.5■□□□□ 0.39
PKNOX1-208ENST00000558955 EDC4Q6P2E9 1401 aaKnown RBP17.5■□□□□ 0.39
PKNOX1-208ENST00000558955 LARP1Q6PKG0 1096 aaKnown RBP17.5■□□□□ 0.39
PKNOX1-208ENST00000558955 NINLQ9Y2I6 1382 aa17.5■□□□□ 0.39
PKNOX1-208ENST00000558955 KCNH5Q8NCM2 988 aa17.49■□□□□ 0.39
PKNOX1-208ENST00000558955 EP400Q96L91 3159 aa17.49■□□□□ 0.39
PKNOX1-208ENST00000558955 ARHGEF25Q86VW2 580 aa17.48■□□□□ 0.39
PKNOX1-208ENST00000558955 USP35Q9P2H5 1018 aa17.48■□□□□ 0.39
PKNOX1-208ENST00000558955 AATKQ6ZMQ8 1374 aa17.48■□□□□ 0.39
PKNOX1-208ENST00000558955 USP31Q70CQ4 1352 aa17.48■□□□□ 0.39
PKNOX1-208ENST00000558955 NFAT5O94916 1531 aa17.47■□□□□ 0.39
PKNOX1-208ENST00000558955 KRT27Q7Z3Y8 459 aa17.47■□□□□ 0.39
PKNOX1-208ENST00000558955 AXIN2Q9Y2T1 843 aa17.47■□□□□ 0.39
PKNOX1-208ENST00000558955 COL5A2P05997 1499 aaPredicted RBP17.47■□□□□ 0.39
PKNOX1-208ENST00000558955 COL18A1P39060 1754 aa17.46■□□□□ 0.39
PKNOX1-208ENST00000558955 USP54Q70EL1 1684 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms