RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 ARSIQ5FYB1 569 aa11.39□□□□□ -0.59
SPG11-205ENST00000558080 NUTM2DQ5VT03 806 aaPredicted RBP11.39□□□□□ -0.59
SPG11-205ENST00000558080 KCNA6P17658 529 aa11.38□□□□□ -0.59
SPG11-205ENST00000558080 HDGFP51858 240 aaKnown RBP11.38□□□□□ -0.59
SPG11-205ENST00000558080 PROSER2Q86WR7 435 aaPredicted RBP11.37□□□□□ -0.59
SPG11-205ENST00000558080 RBM33Q96EV2 1170 aaKnown RBP11.37□□□□□ -0.59
SPG11-205ENST00000558080 PLEKHG1Q9ULL1 1385 aa11.37□□□□□ -0.59
SPG11-205ENST00000558080 CLTCL1P53675 1640 aa11.36□□□□□ -0.59
SPG11-205ENST00000558080 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.36□□□□□ -0.59
SPG11-205ENST00000558080 TRIM52Q96A61 297 aa11.36□□□□□ -0.59
SPG11-205ENST00000558080 NWD1Q149M9 1564 aa11.35□□□□□ -0.59
SPG11-205ENST00000558080 TMEM94Q12767 1356 aa11.34□□□□□ -0.59
SPG11-205ENST00000558080 C2orf72A6NCS6 295 aa11.34□□□□□ -0.59
SPG11-205ENST00000558080 ZNF316A6NFI3 1004 aaPredicted RBP11.34□□□□□ -0.59
SPG11-205ENST00000558080 RGL2O15211 777 aa11.34□□□□□ -0.59
SPG11-205ENST00000558080 RNF166Q96A37 237 aaPredicted RBP11.34□□□□□ -0.59
SPG11-205ENST00000558080 ZNF326Q5BKZ1 582 aaKnown RBP11.33□□□□□ -0.6
SPG11-205ENST00000558080 ILDR2Q71H61 639 aa11.33□□□□□ -0.6
SPG11-205ENST00000558080 HFM1A2PYH4 1435 aa11.33□□□□□ -0.6
SPG11-205ENST00000558080 KHSRPQ92945 711 aaKnown RBP eCLIP11.32□□□□□ -0.6
SPG11-205ENST00000558080 TBX22Q9Y458 520 aa11.32□□□□□ -0.6
SPG11-205ENST00000558080 NKTRP30414 1462 aaKnown RBP11.32□□□□□ -0.6
SPG11-205ENST00000558080 TRPM2O94759 1503 aa11.31□□□□□ -0.6
SPG11-205ENST00000558080 ROBO1Q9Y6N7 1651 aa11.31□□□□□ -0.6
SPG11-205ENST00000558080 ADAMTS13Q76LX8 1427 aa11.31□□□□□ -0.6
SPG11-205ENST00000558080 DIP2AQ14689 1571 aa11.31□□□□□ -0.6
SPG11-205ENST00000558080 NRXN3Q9Y4C0 1643 aa11.31□□□□□ -0.6
SPG11-205ENST00000558080 MED1Q15648 1581 aaPredicted RBP11.3□□□□□ -0.6
SPG11-205ENST00000558080 PTGER2P43116 358 aa11.3□□□□□ -0.6
SPG11-205ENST00000558080 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.29□□□□□ -0.6
SPG11-205ENST00000558080 SLC34A2O95436 690 aa11.29□□□□□ -0.6
SPG11-205ENST00000558080 MSH6P52701 1360 aa11.28□□□□□ -0.6
SPG11-205ENST00000558080 PPLO60437 1756 aa11.28□□□□□ -0.6
SPG11-205ENST00000558080 NEXMIFQ5QGS0 1516 aa11.28□□□□□ -0.6
SPG11-205ENST00000558080 PHLPP1O60346 1717 aa11.27□□□□□ -0.61
SPG11-205ENST00000558080 C14orf37Q86TY3 774 aa11.27□□□□□ -0.61
SPG11-205ENST00000558080 AMOTL2Q9Y2J4 779 aa11.27□□□□□ -0.61
SPG11-205ENST00000558080 SETBP1Q9Y6X0 1596 aa11.27□□□□□ -0.61
SPG11-205ENST00000558080 PIK3R4Q99570 1358 aa11.27□□□□□ -0.61
SPG11-205ENST00000558080 FAM135BQ49AJ0 1406 aa11.26□□□□□ -0.61
SPG11-205ENST00000558080 PTPRUQ92729 1446 aa11.26□□□□□ -0.61
SPG11-205ENST00000558080 XRN1Q8IZH2 1706 aaKnown RBP11.26□□□□□ -0.61
SPG11-205ENST00000558080 SLAIN2Q9P270 581 aa11.25□□□□□ -0.61
SPG11-205ENST00000558080 SETD1AO15047 1707 aaKnown RBP11.24□□□□□ -0.61
SPG11-205ENST00000558080 NUDT7P0C024 238 aa11.24□□□□□ -0.61
SPG11-205ENST00000558080 TMC2Q8TDI7 906 aa11.24□□□□□ -0.61
SPG11-205ENST00000558080 LSM11P83369 360 aaKnown RBP eCLIP11.23□□□□□ -0.61
SPG11-205ENST00000558080 MPHOSPH9Q99550 1183 aa11.23□□□□□ -0.61
SPG11-205ENST00000558080 PCDHGA4Q9Y5G9 962 aa11.23□□□□□ -0.61
SPG11-205ENST00000558080 METP08581 1390 aa11.23□□□□□ -0.61
SPG11-205ENST00000558080 PPP1R37O75864 691 aa11.22□□□□□ -0.61
SPG11-205ENST00000558080 PBX2P40425 430 aa11.22□□□□□ -0.61
SPG11-205ENST00000558080 ANKRD13DQ6ZTN6 518 aa11.22□□□□□ -0.61
SPG11-205ENST00000558080 IFT172Q9UG01 1749 aa11.22□□□□□ -0.61
SPG11-205ENST00000558080 NCOA3Q9Y6Q9 1424 aa11.22□□□□□ -0.61
SPG11-205ENST00000558080 SOCS7O14512 581 aa11.21□□□□□ -0.61
SPG11-205ENST00000558080 ATF3P18847 181 aa11.21□□□□□ -0.61
SPG11-205ENST00000558080 C19orf44Q9H6X5 657 aa11.21□□□□□ -0.61
SPG11-205ENST00000558080 NALCNQ8IZF0 1738 aa11.21□□□□□ -0.62
SPG11-205ENST00000558080 SETD5Q9C0A6 1442 aa11.2□□□□□ -0.62
SPG11-205ENST00000558080 RGL3Q3MIN7 710 aa11.2□□□□□ -0.62
SPG11-205ENST00000558080 LHX6Q9UPM6 363 aa11.2□□□□□ -0.62
SPG11-205ENST00000558080 CCDC144AA2RUR9 1427 aa11.19□□□□□ -0.62
SPG11-205ENST00000558080 RPGRIP1LQ68CZ1 1315 aa11.19□□□□□ -0.62
SPG11-205ENST00000558080 CADPS2Q86UW7 1296 aa11.19□□□□□ -0.62
SPG11-205ENST00000558080 COL16A1Q07092 1604 aaPredicted RBP11.18□□□□□ -0.62
SPG11-205ENST00000558080 RAB3GAP2Q9H2M9 1393 aa11.16□□□□□ -0.62
SPG11-205ENST00000558080 POTEEQ6S8J3 1075 aa11.16□□□□□ -0.62
SPG11-205ENST00000558080 ADGRF5Q8IZF2 1346 aa11.15□□□□□ -0.62
SPG11-205ENST00000558080 HS6ST3Q8IZP7 471 aa11.15□□□□□ -0.62
SPG11-205ENST00000558080 AHDC1Q5TGY3 1603 aaPredicted RBP11.15□□□□□ -0.62
SPG11-205ENST00000558080 SPATA31E1Q6ZUB1 1445 aa11.15□□□□□ -0.62
SPG11-205ENST00000558080 SHPRHQ149N8 1683 aa11.14□□□□□ -0.63
SPG11-205ENST00000558080 ACIN1Q9UKV3 1341 aaKnown RBP11.14□□□□□ -0.63
SPG11-205ENST00000558080 NHSL1Q5SYE7 1610 aa11.14□□□□□ -0.63
SPG11-205ENST00000558080 BRINP3Q76B58 766 aa11.14□□□□□ -0.63
SPG11-205ENST00000558080 DCCP43146 1447 aa11.14□□□□□ -0.63
SPG11-205ENST00000558080 ADGRL3Q9HAR2 1447 aa11.14□□□□□ -0.63
SPG11-205ENST00000558080 ROBO2Q9HCK4 1378 aa11.14□□□□□ -0.63
SPG11-205ENST00000558080 JCADQ9P266 1359 aa11.14□□□□□ -0.63
SPG11-205ENST00000558080 MST1RQ04912 1400 aa11.13□□□□□ -0.63
SPG11-205ENST00000558080 PTCD2Q8WV60 388 aaKnown RBP11.13□□□□□ -0.63
SPG11-205ENST00000558080 RGS17Q9UGC6 210 aaPredicted RBP11.13□□□□□ -0.63
SPG11-205ENST00000558080 ASXL1Q8IXJ9 1541 aa11.13□□□□□ -0.63
SPG11-205ENST00000558080 PTCH1Q13635 1447 aa11.12□□□□□ -0.63
SPG11-205ENST00000558080 PSDA5PKW4 1024 aaPredicted RBP11.12□□□□□ -0.63
SPG11-205ENST00000558080 FOXK1P85037 733 aa11.12□□□□□ -0.63
SPG11-205ENST00000558080 STK26Q9P289 416 aa11.12□□□□□ -0.63
SPG11-205ENST00000558080 RGPD8O14715 1765 aaPredicted RBP11.12□□□□□ -0.63
SPG11-205ENST00000558080 ANKRD30BQ9BXX2 1392 aa11.12□□□□□ -0.63
SPG11-205ENST00000558080 KNDC1Q76NI1 1749 aa11.12□□□□□ -0.63
SPG11-205ENST00000558080 TMEM132EQ6IEE7 984 aa11.11□□□□□ -0.63
SPG11-205ENST00000558080 DDX17Q92841 729 aaKnown RBP11.11□□□□□ -0.63
SPG11-205ENST00000558080 AXIN2Q9Y2T1 843 aa11.11□□□□□ -0.63
SPG11-205ENST00000558080 GPHNQ9NQX3 736 aaPredicted RBP11.1□□□□□ -0.63
SPG11-205ENST00000558080 POTEAQ6S8J7 498 aa11.09□□□□□ -0.63
SPG11-205ENST00000558080 LRP6O75581 1613 aa11.09□□□□□ -0.63
SPG11-205ENST00000558080 C1orf167Q5SNV9 1468 aa11.08□□□□□ -0.64
SPG11-205ENST00000558080 NUTM2BA6NNL0 878 aaPredicted RBP11.08□□□□□ -0.64
SPG11-205ENST00000558080 NUTM2EB1AL46 878 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms