RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 CDK19Q9BWU1 502 aa15.86■□□□□ 0.13
SYNE2-227ENST00000557307 FAM83GA6ND36 823 aa15.85■□□□□ 0.13
SYNE2-227ENST00000557307 HAP1P54257 671 aaPredicted RBP15.85■□□□□ 0.13
SYNE2-227ENST00000557307 GPRASP1Q5JY77 1395 aa15.85■□□□□ 0.13
SYNE2-227ENST00000557307 NGDNQ8NEJ9 315 aaKnown RBP15.84■□□□□ 0.13
SYNE2-227ENST00000557307 THSD7AQ9UPZ6 1657 aa15.83■□□□□ 0.13
SYNE2-227ENST00000557307 POLR3AO14802 1390 aaPredicted RBP15.83■□□□□ 0.12
SYNE2-227ENST00000557307 AKAP12Q02952 1782 aa15.82■□□□□ 0.12
SYNE2-227ENST00000557307 PAK3O75914 559 aaPredicted RBP15.82■□□□□ 0.12
SYNE2-227ENST00000557307 NUTM2GQ5VZR2 741 aa15.82■□□□□ 0.12
SYNE2-227ENST00000557307 PIK3C2AO00443 1686 aa15.82■□□□□ 0.12
SYNE2-227ENST00000557307 LMO7Q8WWI1 1683 aa15.82■□□□□ 0.12
SYNE2-227ENST00000557307 ACEP12821 1306 aa15.81■□□□□ 0.12
SYNE2-227ENST00000557307 NEUROD1Q13562 356 aa15.81■□□□□ 0.12
SYNE2-227ENST00000557307 VPS72Q15906 364 aa15.81■□□□□ 0.12
SYNE2-227ENST00000557307 PPIP5K1Q6PFW1 1433 aa15.81■□□□□ 0.12
SYNE2-227ENST00000557307 CENPJQ9HC77 1338 aaPredicted RBP15.81■□□□□ 0.12
SYNE2-227ENST00000557307 CABP2Q9NPB3 220 aa15.8■□□□□ 0.12
SYNE2-227ENST00000557307 BTG4Q9NY30 223 aa15.79■□□□□ 0.12
SYNE2-227ENST00000557307 KIAA0232Q92628 1395 aa15.78■□□□□ 0.12
SYNE2-227ENST00000557307 TNS1Q9HBL0 1735 aaKnown RBP15.78■□□□□ 0.12
SYNE2-227ENST00000557307 NBPF8Q3BBV2 869 aa15.78■□□□□ 0.12
SYNE2-227ENST00000557307 SEPT12Q8IYM1 358 aa15.78■□□□□ 0.12
SYNE2-227ENST00000557307 CHRNA2Q15822 529 aa15.77■□□□□ 0.12
SYNE2-227ENST00000557307 CCDC9Q9Y3X0 531 aaKnown RBP15.77■□□□□ 0.12
SYNE2-227ENST00000557307 PLEKHG3A1L390 1219 aa15.76■□□□□ 0.11
SYNE2-227ENST00000557307 CCDC61Q9Y6R9 512 aa15.76■□□□□ 0.11
SYNE2-227ENST00000557307 RGPD5Q99666 1765 aa15.76■□□□□ 0.11
SYNE2-227ENST00000557307 MON2Q7Z3U7 1717 aa15.76■□□□□ 0.11
SYNE2-227ENST00000557307 CAMTA1Q9Y6Y1 1673 aa15.76■□□□□ 0.11
SYNE2-227ENST00000557307 SRPK2P78362 688 aaKnown RBP15.75■□□□□ 0.11
SYNE2-227ENST00000557307 FAM98CQ17RN3 349 aaKnown RBP15.75■□□□□ 0.11
SYNE2-227ENST00000557307 WNK3Q9BYP7 1800 aa15.75■□□□□ 0.11
SYNE2-227ENST00000557307 ROCK2O75116 1388 aaKnown RBP15.75■□□□□ 0.11
SYNE2-227ENST00000557307 ONECUT3O60422 494 aaPredicted RBP15.74■□□□□ 0.11
SYNE2-227ENST00000557307 ZC3H6P61129 1189 aaKnown RBP15.74■□□□□ 0.11
SYNE2-227ENST00000557307 COL18A1P39060 1754 aa15.74■□□□□ 0.11
SYNE2-227ENST00000557307 RGPD1P0DJD0 1748 aa15.74■□□□□ 0.11
SYNE2-227ENST00000557307 SLIT3O75094 1523 aa15.73■□□□□ 0.11
SYNE2-227ENST00000557307 USP19O94966 1318 aa15.73■□□□□ 0.11
SYNE2-227ENST00000557307 SRCAPQ6ZRS2 3230 aa15.73■□□□□ 0.11
SYNE2-227ENST00000557307 PRDM11Q9NQV5 511 aa15.73■□□□□ 0.11
SYNE2-227ENST00000557307 USP6P35125 1406 aa15.73■□□□□ 0.11
SYNE2-227ENST00000557307 SPATA31A5Q5VU36 1347 aa15.72■□□□□ 0.11
SYNE2-227ENST00000557307 SPATA31A7Q8IWB4 1347 aa15.72■□□□□ 0.11
SYNE2-227ENST00000557307 BLMP54132 1417 aaPredicted RBP15.72■□□□□ 0.11
SYNE2-227ENST00000557307 SSH2Q76I76 1423 aa15.72■□□□□ 0.11
SYNE2-227ENST00000557307 FAM182BQ5T319 152 aa15.72■□□□□ 0.11
SYNE2-227ENST00000557307 DEFB132Q7Z7B7 95 aa15.71■□□□□ 0.11
SYNE2-227ENST00000557307 CABP1Q9NZU7 370 aa15.71■□□□□ 0.11
SYNE2-227ENST00000557307 A0A0G2JS52 829 aa15.69■□□□□ 0.1
SYNE2-227ENST00000557307 MYT1Q01538 1121 aa15.69■□□□□ 0.1
SYNE2-227ENST00000557307 KRT27Q7Z3Y8 459 aa15.69■□□□□ 0.1
SYNE2-227ENST00000557307 ABTB2Q8N961 1025 aa15.69■□□□□ 0.1
SYNE2-227ENST00000557307 PARP4Q9UKK3 1724 aaKnown RBP15.68■□□□□ 0.1
SYNE2-227ENST00000557307 USP54Q70EL1 1684 aa15.68■□□□□ 0.1
SYNE2-227ENST00000557307 STRN4Q9NRL3 753 aa15.68■□□□□ 0.1
SYNE2-227ENST00000557307 SPATA31A1Q5TZJ5 1347 aa15.68■□□□□ 0.1
SYNE2-227ENST00000557307 COL5A2P05997 1499 aaPredicted RBP15.67■□□□□ 0.1
SYNE2-227ENST00000557307 LRRC37A3O60309 1634 aa15.67■□□□□ 0.1
SYNE2-227ENST00000557307 CD163L1Q9NR16 1453 aa15.66■□□□□ 0.1
SYNE2-227ENST00000557307 CPDO75976 1380 aa15.66■□□□□ 0.1
SYNE2-227ENST00000557307 EVC2Q86UK5 1308 aa15.66■□□□□ 0.1
SYNE2-227ENST00000557307 LTN1O94822 1766 aa15.65■□□□□ 0.1
SYNE2-227ENST00000557307 NFAT5O94916 1531 aa15.65■□□□□ 0.1
SYNE2-227ENST00000557307 LARP1Q6PKG0 1096 aaKnown RBP15.65■□□□□ 0.1
SYNE2-227ENST00000557307 GCP02774 474 aa15.64■□□□□ 0.09
SYNE2-227ENST00000557307 CPSF1Q10570 1443 aaKnown RBP15.64■□□□□ 0.09
SYNE2-227ENST00000557307 PEAK1Q9H792 1746 aa15.64■□□□□ 0.09
SYNE2-227ENST00000557307 USP35Q9P2H5 1018 aa15.64■□□□□ 0.09
SYNE2-227ENST00000557307 SBF2Q86WG5 1849 aa15.64■□□□□ 0.09
SYNE2-227ENST00000557307 RREB1Q92766 1687 aa15.63■□□□□ 0.09
SYNE2-227ENST00000557307 CCDC125Q86Z20 511 aa15.63■□□□□ 0.09
SYNE2-227ENST00000557307 TONSLQ96HA7 1378 aa15.62■□□□□ 0.09
SYNE2-227ENST00000557307 ZBTB7CA1YPR0 619 aa15.62■□□□□ 0.09
SYNE2-227ENST00000557307 NUP188Q5SRE5 1749 aa15.62■□□□□ 0.09
SYNE2-227ENST00000557307 BRD4O60885 1362 aaPredicted RBP15.62■□□□□ 0.09
SYNE2-227ENST00000557307 SBNO2Q9Y2G9 1366 aa15.62■□□□□ 0.09
SYNE2-227ENST00000557307 NLRP6P59044 892 aa15.61■□□□□ 0.09
SYNE2-227ENST00000557307 NLRP13Q86W25 1043 aa15.61■□□□□ 0.09
SYNE2-227ENST00000557307 CARD11Q9BXL7 1154 aa15.61■□□□□ 0.09
SYNE2-227ENST00000557307 ZRANB1Q9UGI0 708 aa15.61■□□□□ 0.09
SYNE2-227ENST00000557307 TTC21BQ7Z4L5 1316 aa15.61■□□□□ 0.09
SYNE2-227ENST00000557307 SOX12O15370 315 aa15.58■□□□□ 0.08
SYNE2-227ENST00000557307 TRIM26Q12899 539 aaPredicted RBP15.58■□□□□ 0.08
SYNE2-227ENST00000557307 AXIN2Q9Y2T1 843 aa15.58■□□□□ 0.08
SYNE2-227ENST00000557307 KTN1Q86UP2 1357 aaKnown RBP15.58■□□□□ 0.08
SYNE2-227ENST00000557307 CRB1P82279 1406 aa15.58■□□□□ 0.08
SYNE2-227ENST00000557307 EVA1CP58658 441 aa15.57■□□□□ 0.08
SYNE2-227ENST00000557307 EN1Q05925 392 aaPredicted RBP15.57■□□□□ 0.08
SYNE2-227ENST00000557307 AATKQ6ZMQ8 1374 aa15.57■□□□□ 0.08
SYNE2-227ENST00000557307 LRP5O75197 1615 aa15.57■□□□□ 0.08
SYNE2-227ENST00000557307 SF3B2Q13435 895 aaKnown RBP15.56■□□□□ 0.08
SYNE2-227ENST00000557307 BARGINQ6ZT62 677 aa15.56■□□□□ 0.08
SYNE2-227ENST00000557307 DISP2A7MBM2 1401 aa15.56■□□□□ 0.08
SYNE2-227ENST00000557307 PSDA5PKW4 1024 aaPredicted RBP15.55■□□□□ 0.08
SYNE2-227ENST00000557307 TCP11L2Q8N4U5 519 aa15.55■□□□□ 0.08
SYNE2-227ENST00000557307 RGPD2P0DJD1 1756 aa15.54■□□□□ 0.08
SYNE2-227ENST00000557307 MYOM1P52179 1685 aa15.54■□□□□ 0.08
SYNE2-227ENST00000557307 A0A1W2PP64 1363 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms