RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 CCDC141Q6ZP82 1450 aa6.05□□□□□ -1.44
SYNE2-223ENST00000557005 ATF7IPQ6VMQ6 1270 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 ZSCAN30Q86W11 494 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 CCAR2Q8N163 923 aaKnown RBP6.04□□□□□ -1.44
SYNE2-223ENST00000557005 NGEFQ8N5V2 710 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 EIF2S2P20042 333 aaKnown RBP6.04□□□□□ -1.44
SYNE2-223ENST00000557005 GNAI1P63096 354 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 MAP7D2Q96T17 732 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 BLMP54132 1417 aaPredicted RBP6.04□□□□□ -1.44
SYNE2-223ENST00000557005 MAGI1Q96QZ7 1491 aaPredicted RBP6.04□□□□□ -1.44
SYNE2-223ENST00000557005 KDM4AO75164 1064 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 PRKAR2BP31323 418 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 NEK4P51957 841 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 HAP1P54257 671 aaPredicted RBP6.04□□□□□ -1.44
SYNE2-223ENST00000557005 BICD2Q8TD16 824 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 SASS6Q6UVJ0 657 aa6.04□□□□□ -1.44
SYNE2-223ENST00000557005 ZHX1Q9UKY1 873 aaPredicted RBP6.04□□□□□ -1.44
SYNE2-223ENST00000557005 PRAG1Q86YV5 1406 aa6.03□□□□□ -1.44
SYNE2-223ENST00000557005 LETM1O95202 739 aaPredicted RBP6.03□□□□□ -1.44
SYNE2-223ENST00000557005 FAM184AQ8NB25 1140 aa6.03□□□□□ -1.44
SYNE2-223ENST00000557005 TWISTNBQ3B726 338 aaPredicted RBP6.03□□□□□ -1.44
SYNE2-223ENST00000557005 ZNF428Q96B54 188 aa6.03□□□□□ -1.44
SYNE2-223ENST00000557005 ATP6V1DQ9Y5K8 247 aa6.03□□□□□ -1.44
SYNE2-223ENST00000557005 KIAA0556O60303 1618 aa6.03□□□□□ -1.44
SYNE2-223ENST00000557005 MAPK8IP2Q13387 824 aaPredicted RBP6.03□□□□□ -1.44
SYNE2-223ENST00000557005 MTERF4Q7Z6M4 381 aaKnown RBP6.03□□□□□ -1.44
SYNE2-223ENST00000557005 CWC22Q9HCG8 908 aaKnown RBP6.03□□□□□ -1.44
SYNE2-223ENST00000557005 IFT140Q96RY7 1462 aa6.03□□□□□ -1.44
SYNE2-223ENST00000557005 FIBPO43427 364 aa6.03□□□□□ -1.44
SYNE2-223ENST00000557005 TSPYL4Q9UJ04 414 aa6.03□□□□□ -1.44
SYNE2-223ENST00000557005 AMPHP49418 695 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 SAMD9Q5K651 1589 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 KIAA0586Q9BVV6 1533 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 RNF123Q5XPI4 1314 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 SPDYE4A6NLX3 237 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 BECN2A8MW95 431 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 ERC2O15083 957 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 NPHP1O15259 732 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 CAMK4Q16566 473 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 CLCN1P35523 988 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 ZNF830Q96NB3 372 aaPredicted RBP6.02□□□□□ -1.45
SYNE2-223ENST00000557005 ERICH4A6NGS2 130 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 TBC1D9Q6ZT07 1266 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 PCDHB15Q9Y5E8 787 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 SCAF11Q99590 1463 aaKnown RBP6.02□□□□□ -1.45
SYNE2-223ENST00000557005 BCORL1Q5H9F3 1711 aa6.02□□□□□ -1.45
SYNE2-223ENST00000557005 CEBPZQ03701 1054 aaKnown RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 PPP4R3BQ5MIZ7 849 aa6.01□□□□□ -1.45
SYNE2-223ENST00000557005 GOLGA6L1Q8N7Z2 621 aa6.01□□□□□ -1.45
SYNE2-223ENST00000557005 CIZ1Q9ULV3 898 aaPredicted RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 STK3Q13188 491 aa6.01□□□□□ -1.45
SYNE2-223ENST00000557005 FKBP5Q13451 457 aaPredicted RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 TRIM27P14373 513 aa6.01□□□□□ -1.45
SYNE2-223ENST00000557005 SSH1Q8WYL5 1049 aa6.01□□□□□ -1.45
SYNE2-223ENST00000557005 THUMPD2Q9BTF0 503 aaKnown RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 PDCL3Q9H2J4 239 aa6.01□□□□□ -1.45
SYNE2-223ENST00000557005 GPATCH8Q9UKJ3 1502 aaKnown RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 IFIT2P09913 472 aaKnown RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 HOMER1Q86YM7 354 aa6.01□□□□□ -1.45
SYNE2-223ENST00000557005 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 COL17A1Q9UMD9 1497 aaPredicted RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 MBD3O95983 291 aa6.01□□□□□ -1.45
SYNE2-223ENST00000557005 SF3A1Q15459 793 aaKnown RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 SPINK5Q9NQ38 1064 aaPredicted RBP6.01□□□□□ -1.45
SYNE2-223ENST00000557005 ADAMTS12P58397 1594 aa6.01□□□□□ -1.45
SYNE2-223ENST00000557005 LARP6Q9BRS8 491 aaKnown RBP6□□□□□ -1.45
SYNE2-223ENST00000557005 TRIM5Q9C035 493 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 TMPOP42166 694 aaKnown RBP6□□□□□ -1.45
SYNE2-223ENST00000557005 ISY1Q9ULR0 285 aaKnown RBP6□□□□□ -1.45
SYNE2-223ENST00000557005 SYCP2Q9BX26 1530 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 VGFO15240 615 aaPredicted RBP6□□□□□ -1.45
SYNE2-223ENST00000557005 BAG4O95429 457 aaKnown RBP6□□□□□ -1.45
SYNE2-223ENST00000557005 NUCB1Q02818 461 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 CNTROBQ8N137 903 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 NUP153P49790 1475 aaKnown RBP6□□□□□ -1.45
SYNE2-223ENST00000557005 SMC2O95347 1197 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 TPM3P06753 285 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 RLBP1P12271 317 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 TEX35Q5T0J7 233 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 ZNF330Q9Y3S2 320 aaPredicted RBP6□□□□□ -1.45
SYNE2-223ENST00000557005 KDM5AP29375 1690 aaKnown RBP6□□□□□ -1.45
SYNE2-223ENST00000557005 FAM177BA6PVY3 158 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 NUTM1Q86Y26 1132 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 CDK19Q9BWU1 502 aa6□□□□□ -1.45
SYNE2-223ENST00000557005 PRAM1Q96QH2 718 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 RBM42Q9BTD8 480 aaKnown RBP5.99□□□□□ -1.45
SYNE2-223ENST00000557005 PDCL2Q8N4E4 241 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 AFAP1Q8N556 730 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 GDPD2Q9HCC8 539 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 MIS18AQ9NYP9 233 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 ABCA5Q8WWZ7 1642 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 SLC4A2P04920 1241 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 TSHZ3Q63HK5 1081 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 RUFY2Q8WXA3 655 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 LRRCC1Q9C099 1032 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 ARHGEF12Q9NZN5 1544 aa5.99□□□□□ -1.45
SYNE2-223ENST00000557005 RRS1Q15050 365 aaKnown RBP5.98□□□□□ -1.45
SYNE2-223ENST00000557005 LRRIQ1Q96JM4 1722 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 CT47B1P0C2W7 299 aaPredicted RBP5.98□□□□□ -1.45
SYNE2-223ENST00000557005 PDILTQ8N807 584 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 185.3 ms