RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	PRR36	Q9H6K5	1346 aa		18.64	■□□□□ 0.57
SHMT2-223	ENST00000556689	DCAF11	Q8TEB1	546 aa		18.62	■□□□□ 0.57
SHMT2-223	ENST00000556689	STAC3	Q96MF2	364 aa		18.62	■□□□□ 0.57
SHMT2-223	ENST00000556689	PRDM11	Q9NQV5	511 aa		18.62	■□□□□ 0.57
SHMT2-223	ENST00000556689	ABCA3	Q99758	1704 aa		18.59	■□□□□ 0.57
SHMT2-223	ENST00000556689	ADGRB1	O14514	1584 aa		18.59	■□□□□ 0.57
SHMT2-223	ENST00000556689	ADGRB2	O60241	1585 aa		18.59	■□□□□ 0.57
SHMT2-223	ENST00000556689	R3HDM1	Q15032	1099 aa	Known RBP	18.58	■□□□□ 0.56
SHMT2-223	ENST00000556689	COL14A1	Q05707	1796 aa	Known RBP	18.58	■□□□□ 0.56
SHMT2-223	ENST00000556689	NUDT16	Q96DE0	195 aa	Known RBP	18.57	■□□□□ 0.56
SHMT2-223	ENST00000556689	TULP4	Q9NRJ4	1543 aa		18.57	■□□□□ 0.56
SHMT2-223	ENST00000556689	LRP5	O75197	1615 aa		18.56	■□□□□ 0.56
SHMT2-223	ENST00000556689	RAB3GAP2	Q9H2M9	1393 aa		18.56	■□□□□ 0.56
SHMT2-223	ENST00000556689	SPATA31A1	Q5TZJ5	1347 aa		18.56	■□□□□ 0.56
SHMT2-223	ENST00000556689	CHRNA2	Q15822	529 aa		18.56	■□□□□ 0.56
SHMT2-223	ENST00000556689	EZH2	Q15910	746 aa	Known RBP	18.56	■□□□□ 0.56
SHMT2-223	ENST00000556689	FAM196A	Q6ZSG2	479 aa		18.56	■□□□□ 0.56
SHMT2-223	ENST00000556689	STRN4	Q9NRL3	753 aa		18.56	■□□□□ 0.56
SHMT2-223	ENST00000556689	NRAP	Q86VF7	1730 aa		18.56	■□□□□ 0.56
SHMT2-223	ENST00000556689	TRPM3	Q9HCF6	1732 aa	Predicted RBP	18.56	■□□□□ 0.56
SHMT2-223	ENST00000556689	ZC3H6	P61129	1189 aa	Known RBP	18.55	■□□□□ 0.56
SHMT2-223	ENST00000556689	KIAA0232	Q92628	1395 aa		18.55	■□□□□ 0.56
SHMT2-223	ENST00000556689	ALS2	Q96Q42	1657 aa		18.54	■□□□□ 0.56
SHMT2-223	ENST00000556689	TRIM37	O94972	964 aa		18.54	■□□□□ 0.56
SHMT2-223	ENST00000556689	EVA1C	P58658	441 aa		18.54	■□□□□ 0.56
SHMT2-223	ENST00000556689	DISP2	A7MBM2	1401 aa		18.53	■□□□□ 0.56
SHMT2-223	ENST00000556689	CAMKK2	Q96RR4	588 aa		18.53	■□□□□ 0.56
SHMT2-223	ENST00000556689	CDK19	Q9BWU1	502 aa		18.53	■□□□□ 0.56
SHMT2-223	ENST00000556689	APBA3	O96018	575 aa		18.52	■□□□□ 0.56
SHMT2-223	ENST00000556689	NUTM2G	Q5VZR2	741 aa		18.52	■□□□□ 0.56
SHMT2-223	ENST00000556689	USP35	Q9P2H5	1018 aa		18.52	■□□□□ 0.56
SHMT2-223	ENST00000556689	NBPF8	Q3BBV2	869 aa		18.51	■□□□□ 0.55
SHMT2-223	ENST00000556689	CCDC61	Q9Y6R9	512 aa		18.51	■□□□□ 0.55
SHMT2-223	ENST00000556689	PDE3B	Q13370	1112 aa		18.5	■□□□□ 0.55
SHMT2-223	ENST00000556689	BARGIN	Q6ZT62	677 aa		18.5	■□□□□ 0.55
SHMT2-223	ENST00000556689	RGPD1	P0DJD0	1748 aa		18.49	■□□□□ 0.55
SHMT2-223	ENST00000556689	ACE	P12821	1306 aa		18.49	■□□□□ 0.55
SHMT2-223	ENST00000556689	ABTB2	Q8N961	1025 aa		18.48	■□□□□ 0.55
SHMT2-223	ENST00000556689	THSD7A	Q9UPZ6	1657 aa		18.47	■□□□□ 0.55
SHMT2-223	ENST00000556689	PLEKHG3	A1L390	1219 aa		18.47	■□□□□ 0.55
SHMT2-223	ENST00000556689	ATP7B	P35670	1465 aa		18.46	■□□□□ 0.55
SHMT2-223	ENST00000556689	PARD3	Q8TEW0	1356 aa		18.46	■□□□□ 0.55
SHMT2-223	ENST00000556689	LARP1	Q6PKG0	1096 aa	Known RBP	18.46	■□□□□ 0.55
SHMT2-223	ENST00000556689	TCP11L2	Q8N4U5	519 aa		18.46	■□□□□ 0.55
SHMT2-223	ENST00000556689	POLR3A	O14802	1390 aa	Predicted RBP	18.45	■□□□□ 0.54
SHMT2-223	ENST00000556689	NBPF14	Q5TI25	921 aa		18.45	■□□□□ 0.54
SHMT2-223	ENST00000556689	SSH2	Q76I76	1423 aa		18.44	■□□□□ 0.54
SHMT2-223	ENST00000556689	THRAP3	Q9Y2W1	955 aa	Known RBP	18.44	■□□□□ 0.54
SHMT2-223	ENST00000556689	CRYBG1	Q9Y4K1	1723 aa		18.43	■□□□□ 0.54
SHMT2-223	ENST00000556689	NLRP13	Q86W25	1043 aa		18.43	■□□□□ 0.54
SHMT2-223	ENST00000556689	GC	P02774	474 aa		18.42	■□□□□ 0.54
SHMT2-223	ENST00000556689	CPD	O75976	1380 aa		18.41	■□□□□ 0.54
SHMT2-223	ENST00000556689	TNS1	Q9HBL0	1735 aa	Known RBP	18.4	■□□□□ 0.54
SHMT2-223	ENST00000556689	C11orf95	C9JLR9	678 aa	Predicted RBP	18.4	■□□□□ 0.54
SHMT2-223	ENST00000556689	USP19	O94966	1318 aa		18.4	■□□□□ 0.54
SHMT2-223	ENST00000556689	CAMTA1	Q9Y6Y1	1673 aa		18.39	■□□□□ 0.53
SHMT2-223	ENST00000556689	SRPK2	P78362	688 aa	Known RBP	18.39	■□□□□ 0.53
SHMT2-223	ENST00000556689	ITSN1	Q15811	1721 aa		18.39	■□□□□ 0.53
SHMT2-223	ENST00000556689	NBPF1	Q3BBV0	1214 aa		18.38	■□□□□ 0.53
SHMT2-223	ENST00000556689	ARHGEF28	Q8N1W1	1705 aa	Known RBP	18.37	■□□□□ 0.53
SHMT2-223	ENST00000556689	PHRF1	Q9P1Y6	1649 aa	Known RBP	18.37	■□□□□ 0.53
SHMT2-223	ENST00000556689	CABP2	Q9NPB3	220 aa		18.36	■□□□□ 0.53
SHMT2-223	ENST00000556689	SPON1	Q9HCB6	807 aa		18.35	■□□□□ 0.53
SHMT2-223	ENST00000556689	PPP1R1B	Q9UD71	204 aa	Predicted RBP	18.35	■□□□□ 0.53
SHMT2-223	ENST00000556689	ZBTB7C	A1YPR0	619 aa		18.34	■□□□□ 0.53
SHMT2-223	ENST00000556689	KCNQ2	O43526	872 aa		18.34	■□□□□ 0.53
SHMT2-223	ENST00000556689	NLRP6	P59044	892 aa		18.34	■□□□□ 0.53
SHMT2-223	ENST00000556689	PPIP5K1	Q6PFW1	1433 aa		18.33	■□□□□ 0.53
SHMT2-223	ENST00000556689	BRD4	O60885	1362 aa	Predicted RBP	18.33	■□□□□ 0.53
SHMT2-223	ENST00000556689	CENPJ	Q9HC77	1338 aa	Predicted RBP	18.33	■□□□□ 0.53
SHMT2-223	ENST00000556689	YY1	P25490	414 aa		18.33	■□□□□ 0.52
SHMT2-223	ENST00000556689	CABP1	Q9NZU7	370 aa		18.33	■□□□□ 0.52
SHMT2-223	ENST00000556689	DCAF8L1	A6NGE4	600 aa		18.32	■□□□□ 0.52
SHMT2-223	ENST00000556689	PLSCR1	O15162	318 aa		18.32	■□□□□ 0.52
SHMT2-223	ENST00000556689	NRK	Q7Z2Y5	1582 aa		18.32	■□□□□ 0.52
SHMT2-223	ENST00000556689	DDB1	Q16531	1140 aa		18.31	■□□□□ 0.52
SHMT2-223	ENST00000556689	COL5A2	P05997	1499 aa	Predicted RBP	18.31	■□□□□ 0.52
SHMT2-223	ENST00000556689	CRB1	P82279	1406 aa		18.31	■□□□□ 0.52
SHMT2-223	ENST00000556689	AATK	Q6ZMQ8	1374 aa		18.3	■□□□□ 0.52
SHMT2-223	ENST00000556689	TOM1L2	Q6ZVM7	507 aa		18.3	■□□□□ 0.52
SHMT2-223	ENST00000556689	TOPAZ1	Q8N9V7	1692 aa		18.3	■□□□□ 0.52
SHMT2-223	ENST00000556689	LMO7	Q8WWI1	1683 aa		18.3	■□□□□ 0.52
SHMT2-223	ENST00000556689	BCL11B	Q9C0K0	894 aa	Predicted RBP	18.29	■□□□□ 0.52
SHMT2-223	ENST00000556689	OVOS2	A0A0G2JMS6	1433 aa		18.28	■□□□□ 0.52
SHMT2-223	ENST00000556689	OVOS2	A0A0J9YW53	1432 aa		18.28	■□□□□ 0.52
SHMT2-223	ENST00000556689	OVOS2	Q6IE36	1432 aa		18.28	■□□□□ 0.52
SHMT2-223	ENST00000556689	RREB1	Q92766	1687 aa		18.27	■□□□□ 0.52
SHMT2-223	ENST00000556689	USP6	P35125	1406 aa		18.26	■□□□□ 0.51
SHMT2-223	ENST00000556689	CDCA7	Q9BWT1	371 aa	Predicted RBP	18.26	■□□□□ 0.51
SHMT2-223	ENST00000556689	AXIN2	Q9Y2T1	843 aa		18.26	■□□□□ 0.51
SHMT2-223	ENST00000556689	KIAA1210	Q9ULL0	1709 aa		18.26	■□□□□ 0.51
SHMT2-223	ENST00000556689	ZNF692	Q9BU19	519 aa	Predicted RBP	18.25	■□□□□ 0.51
SHMT2-223	ENST00000556689	NUP188	Q5SRE5	1749 aa		18.25	■□□□□ 0.51
SHMT2-223	ENST00000556689	WDR17	Q8IZU2	1322 aa		18.24	■□□□□ 0.51
SHMT2-223	ENST00000556689	PTF1A	Q7RTS3	328 aa		18.24	■□□□□ 0.51
SHMT2-223	ENST00000556689	MARCH10	Q8NA82	808 aa	Predicted RBP	18.24	■□□□□ 0.51
SHMT2-223	ENST00000556689	KCNH5	Q8NCM2	988 aa		18.24	■□□□□ 0.51
SHMT2-223	ENST00000556689	NINL	Q9Y2I6	1382 aa		18.24	■□□□□ 0.51
SHMT2-223	ENST00000556689	EVC2	Q86UK5	1308 aa		18.23	■□□□□ 0.51
SHMT2-223	ENST00000556689	ARHGEF25	Q86VW2	580 aa		18.23	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms