RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 MTHFSP49914 203 aa19.55■□□□□ 0.72
VPS33B-205ENST00000556096 CFAP53Q96M91 514 aa19.55■□□□□ 0.72
VPS33B-205ENST00000556096 GGNBP2Q9H3C7 697 aa19.55■□□□□ 0.72
VPS33B-205ENST00000556096 EDC4Q6P2E9 1401 aaKnown RBP19.55■□□□□ 0.72
VPS33B-205ENST00000556096 ADGRL3Q9HAR2 1447 aa19.55■□□□□ 0.72
VPS33B-205ENST00000556096 ITSN1Q15811 1721 aa19.55■□□□□ 0.72
VPS33B-205ENST00000556096 KIF20BQ96Q89 1820 aa19.54■□□□□ 0.72
VPS33B-205ENST00000556096 ZNF692Q9BU19 519 aaPredicted RBP19.54■□□□□ 0.72
VPS33B-205ENST00000556096 PRR36Q9H6K5 1346 aa19.53■□□□□ 0.72
VPS33B-205ENST00000556096 SENP3-EIF4A1A0A087X0R7 540 aa19.53■□□□□ 0.72
VPS33B-205ENST00000556096 UBAP1LF5GYI3 381 aa19.53■□□□□ 0.72
VPS33B-205ENST00000556096 C19orf44Q9H6X5 657 aa19.53■□□□□ 0.72
VPS33B-205ENST00000556096 IQSEC2Q5JU85 1478 aa19.53■□□□□ 0.72
VPS33B-205ENST00000556096 SHPRHQ149N8 1683 aa19.52■□□□□ 0.71
VPS33B-205ENST00000556096 NGEFQ8N5V2 710 aa19.51■□□□□ 0.71
VPS33B-205ENST00000556096 AKAP12Q02952 1782 aa19.51■□□□□ 0.71
VPS33B-205ENST00000556096 PLEKHG3A1L390 1219 aa19.51■□□□□ 0.71
VPS33B-205ENST00000556096 ATF3P18847 181 aa19.51■□□□□ 0.71
VPS33B-205ENST00000556096 PIP4K2BP78356 416 aa19.51■□□□□ 0.71
VPS33B-205ENST00000556096 SALL2Q9Y467 1007 aaPredicted RBP19.51■□□□□ 0.71
VPS33B-205ENST00000556096 NCOA3Q9Y6Q9 1424 aa19.5■□□□□ 0.71
VPS33B-205ENST00000556096 ERICH6BQ5W0A0 696 aa19.5■□□□□ 0.71
VPS33B-205ENST00000556096 MON2Q7Z3U7 1717 aa19.5■□□□□ 0.71
VPS33B-205ENST00000556096 RNF123Q5XPI4 1314 aa19.47■□□□□ 0.71
VPS33B-205ENST00000556096 ZNF521Q96K83 1311 aa19.47■□□□□ 0.71
VPS33B-205ENST00000556096 ANKARQ7Z5J8 1434 aa19.47■□□□□ 0.71
VPS33B-205ENST00000556096 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.47■□□□□ 0.71
VPS33B-205ENST00000556096 CADPS2Q86UW7 1296 aa19.46■□□□□ 0.71
VPS33B-205ENST00000556096 TOM1O60784 492 aa19.45■□□□□ 0.7
VPS33B-205ENST00000556096 CCDC146Q8IYE0 955 aa19.45■□□□□ 0.7
VPS33B-205ENST00000556096 PNPLA6Q8IY17 1366 aa19.44■□□□□ 0.7
VPS33B-205ENST00000556096 MST1RQ04912 1400 aa19.44■□□□□ 0.7
VPS33B-205ENST00000556096 APAF1O14727 1248 aa19.44■□□□□ 0.7
VPS33B-205ENST00000556096 SLAIN2Q9P270 581 aa19.44■□□□□ 0.7
VPS33B-205ENST00000556096 COL3A1P02461 1466 aaPredicted RBP19.44■□□□□ 0.7
VPS33B-205ENST00000556096 RUNDC1Q96C34 613 aa19.43■□□□□ 0.7
VPS33B-205ENST00000556096 CDCA7LQ96GN5 454 aa19.43■□□□□ 0.7
VPS33B-205ENST00000556096 ACEP12821 1306 aa19.43■□□□□ 0.7
VPS33B-205ENST00000556096 DCCP43146 1447 aa19.42■□□□□ 0.7
VPS33B-205ENST00000556096 NME9Q86XW9 330 aa19.42■□□□□ 0.7
VPS33B-205ENST00000556096 AATKQ6ZMQ8 1374 aa19.42■□□□□ 0.7
VPS33B-205ENST00000556096 NRKQ7Z2Y5 1582 aa19.42■□□□□ 0.7
VPS33B-205ENST00000556096 NCBP3Q53F19 620 aaKnown RBP19.41■□□□□ 0.7
VPS33B-205ENST00000556096 ORAI2Q96SN7 254 aa19.41■□□□□ 0.7
VPS33B-205ENST00000556096 C1orf167Q5SNV9 1468 aa19.4■□□□□ 0.7
VPS33B-205ENST00000556096 GOLGA2Q08379 1002 aa19.4■□□□□ 0.7
VPS33B-205ENST00000556096 COG3Q96JB2 828 aa19.4■□□□□ 0.7
VPS33B-205ENST00000556096 USP6P35125 1406 aa19.4■□□□□ 0.7
VPS33B-205ENST00000556096 TTC21BQ7Z4L5 1316 aa19.4■□□□□ 0.7
VPS33B-205ENST00000556096 POLKQ9UBT6 870 aa19.39■□□□□ 0.7
VPS33B-205ENST00000556096 ESCO1Q5FWF5 840 aa19.39■□□□□ 0.69
VPS33B-205ENST00000556096 PMFBP1Q8TBY8 1022 aa19.39■□□□□ 0.69
VPS33B-205ENST00000556096 DDX17Q92841 729 aaKnown RBP19.39■□□□□ 0.69
VPS33B-205ENST00000556096 SSH2Q76I76 1423 aa19.38■□□□□ 0.69
VPS33B-205ENST00000556096 ROBO1Q9Y6N7 1651 aa19.38■□□□□ 0.69
VPS33B-205ENST00000556096 RCAN3Q9UKA8 241 aa19.38■□□□□ 0.69
VPS33B-205ENST00000556096 U2AF1L5P0DN76 240 aaPredicted RBP19.37■□□□□ 0.69
VPS33B-205ENST00000556096 IRX6P78412 446 aaPredicted RBP19.37■□□□□ 0.69
VPS33B-205ENST00000556096 U2AF1Q01081 240 aaKnown RBP eCLIP19.37■□□□□ 0.69
VPS33B-205ENST00000556096 DIAPH1O60610 1272 aaKnown RBP19.37■□□□□ 0.69
VPS33B-205ENST00000556096 BRINP3Q76B58 766 aa19.37■□□□□ 0.69
VPS33B-205ENST00000556096 TRMT2AQ8IZ69 625 aaKnown RBP19.37■□□□□ 0.69
VPS33B-205ENST00000556096 TTC21AQ8NDW8 1320 aa19.36■□□□□ 0.69
VPS33B-205ENST00000556096 SLFN5Q08AF3 891 aa19.36■□□□□ 0.69
VPS33B-205ENST00000556096 DUSP27Q5VZP5 1158 aa19.36■□□□□ 0.69
VPS33B-205ENST00000556096 ZRANB1Q9UGI0 708 aa19.36■□□□□ 0.69
VPS33B-205ENST00000556096 MAP2P11137 1827 aaKnown RBP19.35■□□□□ 0.69
VPS33B-205ENST00000556096 TCP11L2Q8N4U5 519 aa19.34■□□□□ 0.69
VPS33B-205ENST00000556096 KIF1AQ12756 1690 aa19.34■□□□□ 0.69
VPS33B-205ENST00000556096 CCDC27Q2M243 656 aa19.34■□□□□ 0.69
VPS33B-205ENST00000556096 NGDNQ8NEJ9 315 aaKnown RBP19.34■□□□□ 0.69
VPS33B-205ENST00000556096 PHF23Q9BUL5 403 aaPredicted RBP19.34■□□□□ 0.69
VPS33B-205ENST00000556096 PHF8Q9UPP1 1060 aa19.34■□□□□ 0.69
VPS33B-205ENST00000556096 CDK12Q9NYV4 1490 aaPredicted RBP19.33■□□□□ 0.69
VPS33B-205ENST00000556096 OVOS2A0A0J9YW53 1432 aa19.33■□□□□ 0.69
VPS33B-205ENST00000556096 OVOS2Q6IE36 1432 aa19.33■□□□□ 0.69
VPS33B-205ENST00000556096 XPCQ01831 940 aaPredicted RBP19.33■□□□□ 0.68
VPS33B-205ENST00000556096 WWC1Q8IX03 1113 aa19.33■□□□□ 0.68
VPS33B-205ENST00000556096 PNNQ9H307 717 aaKnown RBP19.33■□□□□ 0.68
VPS33B-205ENST00000556096 E9PSI1 815 aa19.32■□□□□ 0.68
VPS33B-205ENST00000556096 U2SURPO15042 1029 aaKnown RBP19.32■□□□□ 0.68
VPS33B-205ENST00000556096 PELP1Q8IZL8 1130 aaKnown RBP19.32■□□□□ 0.68
VPS33B-205ENST00000556096 PLEKHF1Q96S99 279 aa19.32■□□□□ 0.68
VPS33B-205ENST00000556096 PPP4R2Q9NY27 417 aa19.32■□□□□ 0.68
VPS33B-205ENST00000556096 FOXO3O43524 673 aa19.31■□□□□ 0.68
VPS33B-205ENST00000556096 FBLN1P23142 703 aa19.31■□□□□ 0.68
VPS33B-205ENST00000556096 RRP1P56182 461 aaKnown RBP19.31■□□□□ 0.68
VPS33B-205ENST00000556096 USP31Q70CQ4 1352 aa19.3■□□□□ 0.68
VPS33B-205ENST00000556096 EMILIN1Q9Y6C2 1016 aa19.3■□□□□ 0.68
VPS33B-205ENST00000556096 FCHSD2O94868 740 aa19.29■□□□□ 0.68
VPS33B-205ENST00000556096 WDR63Q8IWG1 891 aa19.29■□□□□ 0.68
VPS33B-205ENST00000556096 PIK3C2AO00443 1686 aa19.29■□□□□ 0.68
VPS33B-205ENST00000556096 PPM1GO15355 546 aaPredicted RBP19.28■□□□□ 0.68
VPS33B-205ENST00000556096 HSPA1LP34931 641 aa19.28■□□□□ 0.68
VPS33B-205ENST00000556096 IL13P35225 146 aa19.27■□□□□ 0.68
VPS33B-205ENST00000556096 SPINK5Q9NQ38 1064 aaPredicted RBP19.27■□□□□ 0.68
VPS33B-205ENST00000556096 RRP7AQ9Y3A4 280 aaKnown RBP19.25■□□□□ 0.67
VPS33B-205ENST00000556096 PHLPP1O60346 1717 aa19.25■□□□□ 0.67
VPS33B-205ENST00000556096 TRPM3Q9HCF6 1732 aaPredicted RBP19.25■□□□□ 0.67
VPS33B-205ENST00000556096 MARF1Q9Y4F3 1742 aaKnown RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms