RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 MMP16P51512 607 aa11.08□□□□□ -0.64
LINC00643-204ENST00000555934 VAC14Q08AM6 782 aa11.07□□□□□ -0.64
LINC00643-204ENST00000555934 PTPRNQ16849 979 aa11.06□□□□□ -0.64
LINC00643-204ENST00000555934 NUDT12Q9BQG2 462 aa11.05□□□□□ -0.64
LINC00643-204ENST00000555934 F12P00748 615 aaPredicted RBP11.04□□□□□ -0.64
LINC00643-204ENST00000555934 CCDC24Q8N4L8 307 aa11.04□□□□□ -0.64
LINC00643-204ENST00000555934 CCNYL3P0C7X3 344 aa11.03□□□□□ -0.64
LINC00643-204ENST00000555934 GGCXP38435 758 aa11.03□□□□□ -0.64
LINC00643-204ENST00000555934 PPP1R18Q6NYC8 613 aa11.03□□□□□ -0.64
LINC00643-204ENST00000555934 CALR3Q96L12 384 aaKnown RBP11.02□□□□□ -0.65
LINC00643-204ENST00000555934 RNF223E7ERA6 249 aa11.01□□□□□ -0.65
LINC00643-204ENST00000555934 GLMNQ92990 594 aa11.01□□□□□ -0.65
LINC00643-204ENST00000555934 CCDC97Q96F63 343 aaPredicted RBP11.01□□□□□ -0.65
LINC00643-204ENST00000555934 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.01□□□□□ -0.65
LINC00643-204ENST00000555934 FCF1Q9Y324 198 aaKnown RBP11.01□□□□□ -0.65
LINC00643-204ENST00000555934 PPEF1O14829 653 aaPredicted RBP11□□□□□ -0.65
LINC00643-204ENST00000555934 WASHC4Q2M389 1173 aa11□□□□□ -0.65
LINC00643-204ENST00000555934 PNMA1Q8ND90 353 aa11□□□□□ -0.65
LINC00643-204ENST00000555934 ARXQ96QS3 562 aa11□□□□□ -0.65
LINC00643-204ENST00000555934 FKBPLQ9UIM3 349 aa11□□□□□ -0.65
LINC00643-204ENST00000555934 KCNH2Q12809 1159 aa10.99□□□□□ -0.65
LINC00643-204ENST00000555934 HDGFL1Q5TGJ6 251 aa10.99□□□□□ -0.65
LINC00643-204ENST00000555934 ANKLE1Q8NAG6 615 aa10.99□□□□□ -0.65
LINC00643-204ENST00000555934 EVA1BQ9NVM1 165 aa10.99□□□□□ -0.65
LINC00643-204ENST00000555934 ADAMTS19Q8TE59 1207 aa10.98□□□□□ -0.65
LINC00643-204ENST00000555934 PTCRAQ6ISU1 281 aaPredicted RBP10.97□□□□□ -0.65
LINC00643-204ENST00000555934 HOMEZQ8IX15 550 aa10.97□□□□□ -0.65
LINC00643-204ENST00000555934 SERPINA10Q9UK55 444 aa10.96□□□□□ -0.65
LINC00643-204ENST00000555934 FBXO45P0C2W1 286 aa10.95□□□□□ -0.66
LINC00643-204ENST00000555934 PLA2G2CQ5R387 149 aa10.94□□□□□ -0.66
LINC00643-204ENST00000555934 Q6ZNB5 142 aa10.94□□□□□ -0.66
LINC00643-204ENST00000555934 UNC93B1Q9H1C4 597 aa10.94□□□□□ -0.66
LINC00643-204ENST00000555934 NR1H3Q13133 447 aa10.93□□□□□ -0.66
LINC00643-204ENST00000555934 ZBBXA8MT70 800 aa10.92□□□□□ -0.66
LINC00643-204ENST00000555934 LAPTM4AQ15012 233 aa10.92□□□□□ -0.66
LINC00643-204ENST00000555934 SEMA3FQ13275 785 aa10.91□□□□□ -0.66
LINC00643-204ENST00000555934 LINC01559Q495D7 138 aa10.91□□□□□ -0.66
LINC00643-204ENST00000555934 ARMC2Q8NEN0 867 aa10.91□□□□□ -0.66
LINC00643-204ENST00000555934 LCE2BO14633 110 aa10.9□□□□□ -0.66
LINC00643-204ENST00000555934 ALG2Q9H553 416 aa10.9□□□□□ -0.66
LINC00643-204ENST00000555934 ZC3H4Q9UPT8 1303 aaKnown RBP10.89□□□□□ -0.67
LINC00643-204ENST00000555934 EIF4G2P78344 907 aaKnown RBP eCLIP10.89□□□□□ -0.67
LINC00643-204ENST00000555934 NBPF14Q5TI25 921 aa10.89□□□□□ -0.67
LINC00643-204ENST00000555934 BAP1Q92560 729 aa10.88□□□□□ -0.67
LINC00643-204ENST00000555934 ZBTB24O43167 697 aaPredicted RBP10.87□□□□□ -0.67
LINC00643-204ENST00000555934 RFX1P22670 979 aa10.87□□□□□ -0.67
LINC00643-204ENST00000555934 PTK2Q05397 1052 aa10.87□□□□□ -0.67
LINC00643-204ENST00000555934 PDXDC2PQ6P474 469 aa10.87□□□□□ -0.67
LINC00643-204ENST00000555934 EMID1Q96A84 441 aaPredicted RBP10.87□□□□□ -0.67
LINC00643-204ENST00000555934 OCSTAMPQ9BR26 566 aa10.87□□□□□ -0.67
LINC00643-204ENST00000555934 CARD14Q9BXL6 1004 aa10.87□□□□□ -0.67
LINC00643-204ENST00000555934 MAGEB6P1A0A0J9YX57 407 aa10.86□□□□□ -0.67
LINC00643-204ENST00000555934 ARHGAP9Q9BRR9 750 aa10.86□□□□□ -0.67
LINC00643-204ENST00000555934 PCDHB9Q9Y5E1 797 aa10.86□□□□□ -0.67
LINC00643-204ENST00000555934 SOX11P35716 441 aa10.85□□□□□ -0.67
LINC00643-204ENST00000555934 RPIAP49247 311 aa10.85□□□□□ -0.67
LINC00643-204ENST00000555934 AGERQ15109 404 aa10.85□□□□□ -0.67
LINC00643-204ENST00000555934 LIAT1Q6ZQX7 453 aa10.85□□□□□ -0.67
LINC00643-204ENST00000555934 GPKOWQ92917 476 aaPredicted RBP eCLIP10.85□□□□□ -0.67
LINC00643-204ENST00000555934 TRIM32Q13049 653 aa10.84□□□□□ -0.67
LINC00643-204ENST00000555934 ZBTB33Q86T24 672 aa10.84□□□□□ -0.67
LINC00643-204ENST00000555934 ADAM32Q8TC27 787 aa10.84□□□□□ -0.67
LINC00643-204ENST00000555934 FOXJ1Q92949 421 aa10.84□□□□□ -0.67
LINC00643-204ENST00000555934 UCN2Q96RP3 112 aa10.84□□□□□ -0.67
LINC00643-204ENST00000555934 SLC19A1P41440 591 aa10.83□□□□□ -0.68
LINC00643-204ENST00000555934 GFRA3O60609 400 aa10.82□□□□□ -0.68
LINC00643-204ENST00000555934 SH3BP5LQ7L8J4 393 aa10.82□□□□□ -0.68
LINC00643-204ENST00000555934 PPP1R12CQ9BZL4 782 aa10.82□□□□□ -0.68
LINC00643-204ENST00000555934 PRKD2Q9BZL6 878 aa10.82□□□□□ -0.68
LINC00643-204ENST00000555934 GPSM3Q9Y4H4 160 aa10.82□□□□□ -0.68
LINC00643-204ENST00000555934 PALM3A6NDB9 673 aaPredicted RBP10.81□□□□□ -0.68
LINC00643-204ENST00000555934 PIK3CDO00329 1044 aa10.81□□□□□ -0.68
LINC00643-204ENST00000555934 TRAF7Q6Q0C0 670 aa10.81□□□□□ -0.68
LINC00643-204ENST00000555934 ZNF511Q8NB15 262 aa10.81□□□□□ -0.68
LINC00643-204ENST00000555934 TFIP11Q9UBB9 837 aaKnown RBP10.81□□□□□ -0.68
LINC00643-204ENST00000555934 CD2BP2O95400 341 aaKnown RBP10.8□□□□□ -0.68
LINC00643-204ENST00000555934 LMOD1P29536 600 aaPredicted RBP10.8□□□□□ -0.68
LINC00643-204ENST00000555934 CFAP70Q5T0N1 1121 aa10.8□□□□□ -0.68
LINC00643-204ENST00000555934 TBC1D9Q6ZT07 1266 aa10.8□□□□□ -0.68
LINC00643-204ENST00000555934 V9GY48 417 aaPredicted RBP10.8□□□□□ -0.68
LINC00643-204ENST00000555934 C4orf48Q5BLP8 95 aa10.79□□□□□ -0.68
LINC00643-204ENST00000555934 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.78□□□□□ -0.68
LINC00643-204ENST00000555934 SH3BP2P78314 561 aa10.78□□□□□ -0.68
LINC00643-204ENST00000555934 SPRYD7Q5W111 196 aa10.78□□□□□ -0.68
LINC00643-204ENST00000555934 DZIP3Q86Y13 1208 aaKnown RBP10.78□□□□□ -0.68
LINC00643-204ENST00000555934 NRG2O14511 850 aaPredicted RBP10.77□□□□□ -0.69
LINC00643-204ENST00000555934 WNT7BP56706 349 aa10.77□□□□□ -0.69
LINC00643-204ENST00000555934 SKOR1P84550 965 aa10.77□□□□□ -0.69
LINC00643-204ENST00000555934 CDCA8Q53HL2 280 aa10.77□□□□□ -0.69
LINC00643-204ENST00000555934 SH3RF1Q7Z6J0 888 aa10.77□□□□□ -0.69
LINC00643-204ENST00000555934 BPHLQ86WA6 291 aaPredicted RBP10.77□□□□□ -0.69
LINC00643-204ENST00000555934 ERFEQ4G0M1 354 aa10.76□□□□□ -0.69
LINC00643-204ENST00000555934 FAM174AQ8TBP5 190 aa10.76□□□□□ -0.69
LINC00643-204ENST00000555934 CEP126Q9P2H0 1117 aa10.76□□□□□ -0.69
LINC00643-204ENST00000555934 SKIP12755 728 aa10.75□□□□□ -0.69
LINC00643-204ENST00000555934 ATP9BO43861 1147 aa10.74□□□□□ -0.69
LINC00643-204ENST00000555934 SLFNL1Q499Z3 407 aa10.74□□□□□ -0.69
LINC00643-204ENST00000555934 ZNF697Q5TEC3 545 aa10.74□□□□□ -0.69
LINC00643-204ENST00000555934 ZNF598Q86UK7 904 aaKnown RBP10.74□□□□□ -0.69
LINC00643-204ENST00000555934 MAFBQ9Y5Q3 323 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms