RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 USP6P35125 1406 aa13.83□□□□□ -0.2
SRP54-208ENST00000555557 MST1RQ04912 1400 aa13.83□□□□□ -0.2
SRP54-208ENST00000555557 TTC21BQ7Z4L5 1316 aa13.82□□□□□ -0.2
SRP54-208ENST00000555557 FOXO3O43524 673 aa13.82□□□□□ -0.2
SRP54-208ENST00000555557 YTHDC1Q96MU7 727 aaKnown RBP13.82□□□□□ -0.2
SRP54-208ENST00000555557 DCCP43146 1447 aa13.81□□□□□ -0.2
SRP54-208ENST00000555557 XPCQ01831 940 aaPredicted RBP13.81□□□□□ -0.2
SRP54-208ENST00000555557 NLRP13Q86W25 1043 aa13.81□□□□□ -0.2
SRP54-208ENST00000555557 ITSN1Q15811 1721 aa13.81□□□□□ -0.2
SRP54-208ENST00000555557 PSME1Q06323 249 aa13.8□□□□□ -0.2
SRP54-208ENST00000555557 NSD2O96028 1365 aa13.8□□□□□ -0.2
SRP54-208ENST00000555557 AKAP12Q02952 1782 aa13.8□□□□□ -0.2
SRP54-208ENST00000555557 PAK3O75914 559 aaPredicted RBP13.8□□□□□ -0.2
SRP54-208ENST00000555557 FBLN1P23142 703 aa13.8□□□□□ -0.2
SRP54-208ENST00000555557 DDX17Q92841 729 aaKnown RBP13.8□□□□□ -0.2
SRP54-208ENST00000555557 SSH2Q76I76 1423 aa13.8□□□□□ -0.2
SRP54-208ENST00000555557 SLAIN2Q9P270 581 aa13.79□□□□□ -0.2
SRP54-208ENST00000555557 MON2Q7Z3U7 1717 aa13.79□□□□□ -0.2
SRP54-208ENST00000555557 FAM9BQ8IZU0 186 aa13.78□□□□□ -0.2
SRP54-208ENST00000555557 NUTM2GQ5VZR2 741 aa13.78□□□□□ -0.2
SRP54-208ENST00000555557 COG3Q96JB2 828 aa13.77□□□□□ -0.21
SRP54-208ENST00000555557 BRD4O60885 1362 aaPredicted RBP13.77□□□□□ -0.21
SRP54-208ENST00000555557 BRINP3Q76B58 766 aa13.76□□□□□ -0.21
SRP54-208ENST00000555557 TTC21AQ8NDW8 1320 aa13.76□□□□□ -0.21
SRP54-208ENST00000555557 IQSEC2Q5JU85 1478 aa13.76□□□□□ -0.21
SRP54-208ENST00000555557 KRT28Q7Z3Y7 464 aa13.76□□□□□ -0.21
SRP54-208ENST00000555557 ABTB2Q8N961 1025 aa13.76□□□□□ -0.21
SRP54-208ENST00000555557 NRKQ7Z2Y5 1582 aa13.75□□□□□ -0.21
SRP54-208ENST00000555557 MTHFSP49914 203 aa13.75□□□□□ -0.21
SRP54-208ENST00000555557 SOX12O15370 315 aa13.74□□□□□ -0.21
SRP54-208ENST00000555557 NLRP6P59044 892 aa13.74□□□□□ -0.21
SRP54-208ENST00000555557 PNISRQ8TF01 805 aaKnown RBP13.74□□□□□ -0.21
SRP54-208ENST00000555557 KIF20BQ96Q89 1820 aa13.73□□□□□ -0.21
SRP54-208ENST00000555557 PLEKHG5O94827 1062 aa13.73□□□□□ -0.21
SRP54-208ENST00000555557 LMOD2Q6P5Q4 547 aa13.73□□□□□ -0.21
SRP54-208ENST00000555557 RRS1Q15050 365 aaKnown RBP13.72□□□□□ -0.21
SRP54-208ENST00000555557 PPM1GO15355 546 aaPredicted RBP13.72□□□□□ -0.21
SRP54-208ENST00000555557 POLKQ9UBT6 870 aa13.72□□□□□ -0.21
SRP54-208ENST00000555557 OVOS2A0A0J9YW53 1432 aa13.71□□□□□ -0.21
SRP54-208ENST00000555557 OVOS2Q6IE36 1432 aa13.71□□□□□ -0.21
SRP54-208ENST00000555557 MYT1Q01538 1121 aa13.71□□□□□ -0.21
SRP54-208ENST00000555557 EMILIN1Q9Y6C2 1016 aa13.71□□□□□ -0.21
SRP54-208ENST00000555557 NPHP3Q7Z494 1330 aa13.71□□□□□ -0.21
SRP54-208ENST00000555557 USP31Q70CQ4 1352 aa13.7□□□□□ -0.22
SRP54-208ENST00000555557 KIF1AQ12756 1690 aa13.7□□□□□ -0.22
SRP54-208ENST00000555557 ANKRD26Q9UPS8 1709 aa13.7□□□□□ -0.22
SRP54-208ENST00000555557 UBAP1LF5GYI3 381 aa13.7□□□□□ -0.22
SRP54-208ENST00000555557 SCAF1Q9H7N4 1312 aaKnown RBP13.7□□□□□ -0.22
SRP54-208ENST00000555557 PIK3C2AO00443 1686 aa13.69□□□□□ -0.22
SRP54-208ENST00000555557 SENP3-EIF4A1A0A087X0R7 540 aa13.69□□□□□ -0.22
SRP54-208ENST00000555557 AATKQ6ZMQ8 1374 aa13.67□□□□□ -0.22
SRP54-208ENST00000555557 CFAP53Q96M91 514 aa13.67□□□□□ -0.22
SRP54-208ENST00000555557 ADAMTS8Q9UP79 889 aa13.67□□□□□ -0.22
SRP54-208ENST00000555557 WDR43Q15061 677 aaKnown RBP eCLIP13.66□□□□□ -0.22
SRP54-208ENST00000555557 PXDNQ92626 1479 aa13.66□□□□□ -0.22
SRP54-208ENST00000555557 PIP4K2BP78356 416 aa13.66□□□□□ -0.22
SRP54-208ENST00000555557 TRPM3Q9HCF6 1732 aaPredicted RBP13.65□□□□□ -0.22
SRP54-208ENST00000555557 SOS2Q07890 1332 aaPredicted RBP13.65□□□□□ -0.22
SRP54-208ENST00000555557 MAP3K19Q56UN5 1328 aa13.65□□□□□ -0.22
SRP54-208ENST00000555557 SPATA31A3Q5VYP0 1347 aa13.65□□□□□ -0.22
SRP54-208ENST00000555557 SBNO1A3KN83 1393 aa13.65□□□□□ -0.22
SRP54-208ENST00000555557 TOM1O60784 492 aa13.64□□□□□ -0.23
SRP54-208ENST00000555557 HNRNPUQ00839 825 aaKnown RBP eCLIP13.64□□□□□ -0.23
SRP54-208ENST00000555557 CABLES1Q8TDN4 633 aa13.64□□□□□ -0.23
SRP54-208ENST00000555557 GCP02774 474 aa13.64□□□□□ -0.23
SRP54-208ENST00000555557 PNPLA6Q8IY17 1366 aa13.63□□□□□ -0.23
SRP54-208ENST00000555557 MAP2P11137 1827 aaKnown RBP13.63□□□□□ -0.23
SRP54-208ENST00000555557 ZBTB7CA1YPR0 619 aa13.62□□□□□ -0.23
SRP54-208ENST00000555557 DIAPH1O60610 1272 aaKnown RBP13.62□□□□□ -0.23
SRP54-208ENST00000555557 HSP90AB2PQ58FF8 381 aa13.62□□□□□ -0.23
SRP54-208ENST00000555557 TNS3Q68CZ2 1445 aa13.62□□□□□ -0.23
SRP54-208ENST00000555557 MARF1Q9Y4F3 1742 aaKnown RBP13.62□□□□□ -0.23
SRP54-208ENST00000555557 U2SURPO15042 1029 aaKnown RBP13.62□□□□□ -0.23
SRP54-208ENST00000555557 AMPHP49418 695 aa13.62□□□□□ -0.23
SRP54-208ENST00000555557 KCNH5Q8NCM2 988 aa13.62□□□□□ -0.23
SRP54-208ENST00000555557 SMG6Q86US8 1419 aaKnown RBP13.61□□□□□ -0.23
SRP54-208ENST00000555557 U2AF1L5P0DN76 240 aaPredicted RBP13.61□□□□□ -0.23
SRP54-208ENST00000555557 U2AF1Q01081 240 aaKnown RBP eCLIP13.61□□□□□ -0.232e-23■■■■■ 60.6
SRP54-208ENST00000555557 CCDC146Q8IYE0 955 aa13.61□□□□□ -0.23
SRP54-208ENST00000555557 COL3A1P02461 1466 aaPredicted RBP13.61□□□□□ -0.23
SRP54-208ENST00000555557 ROBO1Q9Y6N7 1651 aa13.61□□□□□ -0.23
SRP54-208ENST00000555557 USP19O94966 1318 aa13.61□□□□□ -0.23
SRP54-208ENST00000555557 INSRP06213 1382 aa13.6□□□□□ -0.23
SRP54-208ENST00000555557 ALS2Q96Q42 1657 aa13.6□□□□□ -0.23
SRP54-208ENST00000555557 IL13P35225 146 aa13.6□□□□□ -0.23
SRP54-208ENST00000555557 ZC3H6P61129 1189 aaKnown RBP13.6□□□□□ -0.23
SRP54-208ENST00000555557 NUDCQ9Y266 331 aa13.6□□□□□ -0.23
SRP54-208ENST00000555557 ARHGEF10O15013 1369 aa13.59□□□□□ -0.23
SRP54-208ENST00000555557 SALL2Q9Y467 1007 aaPredicted RBP13.59□□□□□ -0.23
SRP54-208ENST00000555557 USP54Q70EL1 1684 aa13.59□□□□□ -0.23
SRP54-208ENST00000555557 CDK12Q9NYV4 1490 aaPredicted RBP13.59□□□□□ -0.23
SRP54-208ENST00000555557 HOXC9P31274 260 aa13.58□□□□□ -0.23
SRP54-208ENST00000555557 EIF4A2Q14240 407 aaKnown RBP13.58□□□□□ -0.23
SRP54-208ENST00000555557 MED1Q15648 1581 aaPredicted RBP13.58□□□□□ -0.24
SRP54-208ENST00000555557 PEAK1Q9H792 1746 aa13.58□□□□□ -0.24
SRP54-208ENST00000555557 NFAT5O94916 1531 aa13.58□□□□□ -0.24
SRP54-208ENST00000555557 ARHGEF25Q86VW2 580 aa13.58□□□□□ -0.24
SRP54-208ENST00000555557 SHPRHQ149N8 1683 aa13.58□□□□□ -0.24
SRP54-208ENST00000555557 NHSL1Q5SYE7 1610 aa13.57□□□□□ -0.24
SRP54-208ENST00000555557 FLT4P35916 1363 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms