RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 CUX1P39880 1505 aa10.57□□□□□ -0.72
LINC00643-203ENST00000555518 TOP2BQ02880 1626 aa10.56□□□□□ -0.72
LINC00643-203ENST00000555518 BIVM-ERCC5R4GMW8 1640 aa10.56□□□□□ -0.72
LINC00643-203ENST00000555518 C6orf229H3BNL8 230 aa10.56□□□□□ -0.72
LINC00643-203ENST00000555518 SIAH2O43255 324 aa10.56□□□□□ -0.72
LINC00643-203ENST00000555518 NPAS3Q8IXF0 933 aa10.56□□□□□ -0.72
LINC00643-203ENST00000555518 SPDYE5A6NIY4 337 aa10.55□□□□□ -0.72
LINC00643-203ENST00000555518 PTPRNQ16849 979 aa10.55□□□□□ -0.72
LINC00643-203ENST00000555518 SYMPKQ92797 1274 aaKnown RBP10.55□□□□□ -0.72
LINC00643-203ENST00000555518 PDS5BQ9NTI5 1447 aa10.54□□□□□ -0.72
LINC00643-203ENST00000555518 KIF21AQ7Z4S6 1674 aa10.53□□□□□ -0.72
LINC00643-203ENST00000555518 FAM181BA6NEQ2 426 aa10.53□□□□□ -0.72
LINC00643-203ENST00000555518 PLEKHG3A1L390 1219 aa10.52□□□□□ -0.73
LINC00643-203ENST00000555518 CAPN5O15484 640 aaPredicted RBP10.52□□□□□ -0.73
LINC00643-203ENST00000555518 DESI1Q6ICB0 168 aa10.52□□□□□ -0.73
LINC00643-203ENST00000555518 PTCRAQ6ISU1 281 aaPredicted RBP10.52□□□□□ -0.73
LINC00643-203ENST00000555518 EVA1BQ9NVM1 165 aa10.52□□□□□ -0.73
LINC00643-203ENST00000555518 CEP164Q9UPV0 1460 aa10.52□□□□□ -0.73
LINC00643-203ENST00000555518 SSTR3P32745 418 aaPredicted RBP10.51□□□□□ -0.73
LINC00643-203ENST00000555518 MPNDQ8N594 471 aa10.51□□□□□ -0.73
LINC00643-203ENST00000555518 NXF1Q9UBU9 619 aaKnown RBP10.51□□□□□ -0.73
LINC00643-203ENST00000555518 URB2Q14146 1524 aaKnown RBP10.5□□□□□ -0.73
LINC00643-203ENST00000555518 SH3BP2P78314 561 aa10.5□□□□□ -0.73
LINC00643-203ENST00000555518 DIXDC1Q155Q3 683 aa10.5□□□□□ -0.73
LINC00643-203ENST00000555518 PCDHGC3Q9UN70 934 aa10.5□□□□□ -0.73
LINC00643-203ENST00000555518 DNMBPQ6XZF7 1577 aa10.5□□□□□ -0.73
LINC00643-203ENST00000555518 VARSP26640 1264 aaKnown RBP10.49□□□□□ -0.73
LINC00643-203ENST00000555518 GJA5P36382 358 aa10.49□□□□□ -0.73
LINC00643-203ENST00000555518 SPIRE2Q8WWL2 714 aa10.49□□□□□ -0.73
LINC00643-203ENST00000555518 UNC93B1Q9H1C4 597 aa10.49□□□□□ -0.73
LINC00643-203ENST00000555518 TOPBP1Q92547 1522 aa10.48□□□□□ -0.73
LINC00643-203ENST00000555518 KCNH2Q12809 1159 aa10.48□□□□□ -0.73
LINC00643-203ENST00000555518 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.48□□□□□ -0.73
LINC00643-203ENST00000555518 MTMR2Q13614 643 aa10.47□□□□□ -0.73
LINC00643-203ENST00000555518 IRF7Q92985 503 aa10.47□□□□□ -0.73
LINC00643-203ENST00000555518 TTLL12Q14166 644 aaPredicted RBP10.46□□□□□ -0.73
LINC00643-203ENST00000555518 AMHR2Q16671 573 aa10.46□□□□□ -0.73
LINC00643-203ENST00000555518 FGD5Q6ZNL6 1462 aa10.45□□□□□ -0.74
LINC00643-203ENST00000555518 MRC2Q9UBG0 1479 aa10.45□□□□□ -0.74
LINC00643-203ENST00000555518 SOGA1O94964 1423 aa10.45□□□□□ -0.74
LINC00643-203ENST00000555518 ZNF511Q8NB15 262 aa10.45□□□□□ -0.74
LINC00643-203ENST00000555518 PRR7Q8TB68 274 aa10.45□□□□□ -0.74
LINC00643-203ENST00000555518 TRIM46Q7Z4K8 759 aa10.44□□□□□ -0.74
LINC00643-203ENST00000555518 THOC2Q8NI27 1593 aaKnown RBP10.43□□□□□ -0.74
LINC00643-203ENST00000555518 MOXD2PA6NHM9 499 aa10.43□□□□□ -0.74
LINC00643-203ENST00000555518 BMP1P13497 986 aa10.43□□□□□ -0.74
LINC00643-203ENST00000555518 LCE2CQ5TA81 110 aa10.43□□□□□ -0.74
LINC00643-203ENST00000555518 BARGINQ6ZT62 677 aa10.43□□□□□ -0.74
LINC00643-203ENST00000555518 BAP1Q92560 729 aa10.43□□□□□ -0.74
LINC00643-203ENST00000555518 WDR62O43379 1518 aa10.43□□□□□ -0.74
LINC00643-203ENST00000555518 RUSC2Q8N2Y8 1516 aa10.43□□□□□ -0.74
LINC00643-203ENST00000555518 POLA1P09884 1462 aaPredicted RBP10.42□□□□□ -0.74
LINC00643-203ENST00000555518 SCARF1Q14162 830 aa10.42□□□□□ -0.74
LINC00643-203ENST00000555518 NDUFV2P19404 249 aa10.41□□□□□ -0.74
LINC00643-203ENST00000555518 FAM174AQ8TBP5 190 aa10.41□□□□□ -0.74
LINC00643-203ENST00000555518 LINC01559Q495D7 138 aa10.4□□□□□ -0.74
LINC00643-203ENST00000555518 ERCC6Q03468 1493 aa10.4□□□□□ -0.74
LINC00643-203ENST00000555518 H3BM21 787 aa10.39□□□□□ -0.75
LINC00643-203ENST00000555518 ZMYND10O75800 440 aa10.39□□□□□ -0.75
LINC00643-203ENST00000555518 ADH1CP00326 375 aa10.39□□□□□ -0.75
LINC00643-203ENST00000555518 NNTQ13423 1086 aa10.39□□□□□ -0.75
LINC00643-203ENST00000555518 LYPD8Q6UX82 237 aa10.39□□□□□ -0.75
LINC00643-203ENST00000555518 GIGYF2Q6Y7W6 1299 aaKnown RBP10.39□□□□□ -0.75
LINC00643-203ENST00000555518 ZFP42Q96MM3 310 aa10.39□□□□□ -0.75
LINC00643-203ENST00000555518 EEA1Q15075 1411 aa10.39□□□□□ -0.75
LINC00643-203ENST00000555518 RAD54L2Q9Y4B4 1467 aa10.38□□□□□ -0.75
LINC00643-203ENST00000555518 ZSCAN1Q8NBB4 408 aa10.38□□□□□ -0.75
LINC00643-203ENST00000555518 BEGAINQ9BUH8 593 aa10.38□□□□□ -0.75
LINC00643-203ENST00000555518 TLL2Q9Y6L7 1015 aa10.38□□□□□ -0.75
LINC00643-203ENST00000555518 ABCA10Q8WWZ4 1543 aa10.38□□□□□ -0.75
LINC00643-203ENST00000555518 CUX2O14529 1486 aa10.37□□□□□ -0.75
LINC00643-203ENST00000555518 WDR97A6NE52 1622 aa10.37□□□□□ -0.75
LINC00643-203ENST00000555518 CTHP32929 405 aa10.37□□□□□ -0.75
LINC00643-203ENST00000555518 MRPL14Q6P1L8 145 aaKnown RBP10.37□□□□□ -0.75
LINC00643-203ENST00000555518 GMPRP36959 345 aa10.36□□□□□ -0.75
LINC00643-203ENST00000555518 ZBTB3Q9H5J0 574 aa10.36□□□□□ -0.75
LINC00643-203ENST00000555518 TARBP1Q13395 1621 aaKnown RBP10.36□□□□□ -0.75
LINC00643-203ENST00000555518 WDR4P57081 412 aaKnown RBP10.35□□□□□ -0.75
LINC00643-203ENST00000555518 PRPF38BQ5VTL8 546 aaKnown RBP10.35□□□□□ -0.75
LINC00643-203ENST00000555518 RSBN1LQ6PCB5 846 aaPredicted RBP10.35□□□□□ -0.75
LINC00643-203ENST00000555518 FAM9AQ8IZU1 332 aaPredicted RBP10.35□□□□□ -0.75
LINC00643-203ENST00000555518 CDK15Q96Q40 435 aa10.35□□□□□ -0.75
LINC00643-203ENST00000555518 TBC1D2Q9BYX2 928 aa10.35□□□□□ -0.75
LINC00643-203ENST00000555518 TIMP2P16035 220 aa10.34□□□□□ -0.75
LINC00643-203ENST00000555518 SPTLC1O15269 473 aa10.33□□□□□ -0.76
LINC00643-203ENST00000555518 NR5A1Q13285 461 aa10.33□□□□□ -0.76
LINC00643-203ENST00000555518 KIF27Q86VH2 1401 aa10.33□□□□□ -0.76
LINC00643-203ENST00000555518 BPHLQ86WA6 291 aaPredicted RBP10.31□□□□□ -0.76
LINC00643-203ENST00000555518 ARMC2Q8NEN0 867 aa10.31□□□□□ -0.76
LINC00643-203ENST00000555518 ZC3H15Q8WU90 426 aaKnown RBP10.31□□□□□ -0.76
LINC00643-203ENST00000555518 ABCA5Q8WWZ7 1642 aa10.31□□□□□ -0.76
LINC00643-203ENST00000555518 F12P00748 615 aaPredicted RBP10.3□□□□□ -0.76
LINC00643-203ENST00000555518 PURBQ96QR8 312 aaKnown RBP10.3□□□□□ -0.76
LINC00643-203ENST00000555518 KLF16Q9BXK1 252 aaPredicted RBP10.3□□□□□ -0.76
LINC00643-203ENST00000555518 IFT140Q96RY7 1462 aa10.3□□□□□ -0.76
LINC00643-203ENST00000555518 PRXQ9BXM0 1461 aa10.3□□□□□ -0.76
LINC00643-203ENST00000555518 KIF21BO75037 1637 aa10.29□□□□□ -0.76
LINC00643-203ENST00000555518 LOC105371045A0A1W2PR82 267 aa10.29□□□□□ -0.76
LINC00643-203ENST00000555518 UPP2O95045 317 aa10.29□□□□□ -0.76
LINC00643-203ENST00000555518 HRCP23327 699 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms