RNA–Protein interactions for RNA: ENST00000555241.5

SYNE2-218, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 665 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-218ENST00000555241 PLEKHG3A1L390 1219 aa30.77■■■□□ 2.52
SYNE2-218ENST00000555241 RALGAPBQ86X10 1494 aa30.76■■■□□ 2.51
SYNE2-218ENST00000555241 ACEP12821 1306 aa30.74■■■□□ 2.51
SYNE2-218ENST00000555241 PPIP5K1Q6PFW1 1433 aa30.74■■■□□ 2.51
SYNE2-218ENST00000555241 PAK3O75914 559 aaPredicted RBP30.74■■■□□ 2.51
SYNE2-218ENST00000555241 PLEKHG5O94827 1062 aa30.73■■■□□ 2.51
SYNE2-218ENST00000555241 CABP2Q9NPB3 220 aa30.73■■■□□ 2.51
SYNE2-218ENST00000555241 EVC2Q86UK5 1308 aa30.72■■■□□ 2.51
SYNE2-218ENST00000555241 UNC5CLQ8IV45 518 aa30.71■■■□□ 2.51
SYNE2-218ENST00000555241 PHRF1Q9P1Y6 1649 aaKnown RBP30.7■■■□□ 2.51
SYNE2-218ENST00000555241 COL14A1Q05707 1796 aaKnown RBP30.69■■■□□ 2.5
SYNE2-218ENST00000555241 CARD11Q9BXL7 1154 aa30.67■■■□□ 2.5
SYNE2-218ENST00000555241 NRAPQ86VF7 1730 aa30.67■■■□□ 2.5
SYNE2-218ENST00000555241 GJD4Q96KN9 370 aaPredicted RBP30.66■■■□□ 2.5
SYNE2-218ENST00000555241 GLI3P10071 1580 aa30.66■■■□□ 2.5
SYNE2-218ENST00000555241 SBNO2Q9Y2G9 1366 aa30.66■■■□□ 2.5
SYNE2-218ENST00000555241 BRD4O60885 1362 aaPredicted RBP30.63■■■□□ 2.49
SYNE2-218ENST00000555241 AKAP12Q02952 1782 aa30.62■■■□□ 2.49
SYNE2-218ENST00000555241 FAM83GA6ND36 823 aa30.62■■■□□ 2.49
SYNE2-218ENST00000555241 UPF1Q92900 1129 aaKnown RBP eCLIP30.61■■■□□ 2.49
SYNE2-218ENST00000555241 CABP1Q9NZU7 370 aa30.61■■■□□ 2.49
SYNE2-218ENST00000555241 USP6P35125 1406 aa30.58■■■□□ 2.49
SYNE2-218ENST00000555241 VPS72Q15906 364 aa30.58■■■□□ 2.49
SYNE2-218ENST00000555241 ATAD2Q6PL18 1390 aa30.57■■■□□ 2.48
SYNE2-218ENST00000555241 ABTB2Q8N961 1025 aa30.57■■■□□ 2.48
SYNE2-218ENST00000555241 NRKQ7Z2Y5 1582 aa30.57■■■□□ 2.48
SYNE2-218ENST00000555241 BRWD3Q6RI45 1802 aa30.55■■■□□ 2.48
SYNE2-218ENST00000555241 NUTM2GQ5VZR2 741 aa30.55■■■□□ 2.48
SYNE2-218ENST00000555241 CLSPNQ9HAW4 1339 aa30.54■■■□□ 2.48
SYNE2-218ENST00000555241 PRDM11Q9NQV5 511 aa30.54■■■□□ 2.48
SYNE2-218ENST00000555241 BTG4Q9NY30 223 aa30.54■■■□□ 2.48
SYNE2-218ENST00000555241 KIAA0232Q92628 1395 aa30.53■■■□□ 2.48
SYNE2-218ENST00000555241 PCGF6Q9BYE7 350 aa30.52■■■□□ 2.48
SYNE2-218ENST00000555241 USP19O94966 1318 aa30.51■■■□□ 2.48
SYNE2-218ENST00000555241 SSH2Q76I76 1423 aa30.51■■■□□ 2.47
SYNE2-218ENST00000555241 NLRP13Q86W25 1043 aa30.51■■■□□ 2.47
SYNE2-218ENST00000555241 PIK3C2AO00443 1686 aa30.51■■■□□ 2.47
SYNE2-218ENST00000555241 MON2Q7Z3U7 1717 aa30.5■■■□□ 2.47
SYNE2-218ENST00000555241 EP400Q96L91 3159 aa30.5■■■□□ 2.47
SYNE2-218ENST00000555241 CCDC9Q9Y3X0 531 aaKnown RBP30.5■■■□□ 2.47
SYNE2-218ENST00000555241 ZNF692Q9BU19 519 aaPredicted RBP30.49■■■□□ 2.47
SYNE2-218ENST00000555241 CPSF1Q10570 1443 aaKnown RBP30.47■■■□□ 2.47
SYNE2-218ENST00000555241 ZC3H6P61129 1189 aaKnown RBP30.46■■■□□ 2.47
SYNE2-218ENST00000555241 TIMELESSQ9UNS1 1208 aa30.46■■■□□ 2.47
SYNE2-218ENST00000555241 CPDO75976 1380 aa30.45■■■□□ 2.47
SYNE2-218ENST00000555241 ONECUT3O60422 494 aaPredicted RBP30.45■■■□□ 2.47
SYNE2-218ENST00000555241 LMO7Q8WWI1 1683 aa30.45■■■□□ 2.46
SYNE2-218ENST00000555241 SLIT3O75094 1523 aa30.44■■■□□ 2.46
SYNE2-218ENST00000555241 CHRNA2Q15822 529 aa30.43■■■□□ 2.46
SYNE2-218ENST00000555241 NLRP6P59044 892 aa30.42■■■□□ 2.46
SYNE2-218ENST00000555241 GCP02774 474 aa30.41■■■□□ 2.46
SYNE2-218ENST00000555241 SEPT12Q8IYM1 358 aa30.41■■■□□ 2.46
SYNE2-218ENST00000555241 PUS7Q96PZ0 661 aaKnown RBP30.41■■■□□ 2.46
SYNE2-218ENST00000555241 TTC21BQ7Z4L5 1316 aa30.41■■■□□ 2.46
SYNE2-218ENST00000555241 KTN1Q86UP2 1357 aaKnown RBP30.41■■■□□ 2.46
SYNE2-218ENST00000555241 ST20-MTHFSA0A0A6YYL1 179 aa30.4■■■□□ 2.46
SYNE2-218ENST00000555241 SPATA31A5Q5VU36 1347 aa30.4■■■□□ 2.46
SYNE2-218ENST00000555241 SPATA31A7Q8IWB4 1347 aa30.4■■■□□ 2.46
SYNE2-218ENST00000555241 TTC21AQ8NDW8 1320 aa30.4■■■□□ 2.46
SYNE2-218ENST00000555241 SLC24A1O60721 1099 aa30.39■■■□□ 2.46
SYNE2-218ENST00000555241 TESK2Q96S53 571 aa30.39■■■□□ 2.46
SYNE2-218ENST00000555241 CD163L1Q9NR16 1453 aa30.38■■■□□ 2.45
SYNE2-218ENST00000555241 CAMTA1Q9Y6Y1 1673 aa30.38■■■□□ 2.45
SYNE2-218ENST00000555241 THSD7AQ9UPZ6 1657 aa30.36■■■□□ 2.45
SYNE2-218ENST00000555241 USP54Q70EL1 1684 aa30.36■■■□□ 2.45
SYNE2-218ENST00000555241 FAM98CQ17RN3 349 aaKnown RBP30.35■■■□□ 2.45
SYNE2-218ENST00000555241 USP47Q96K76 1375 aa30.35■■■□□ 2.45
SYNE2-218ENST00000555241 TMC1Q8TDI8 760 aa30.34■■■□□ 2.45
SYNE2-218ENST00000555241 STRN4Q9NRL3 753 aa30.34■■■□□ 2.45
SYNE2-218ENST00000555241 SPATA31A1Q5TZJ5 1347 aa30.32■■■□□ 2.44
SYNE2-218ENST00000555241 A0A0G2JS52 829 aa30.32■■■□□ 2.44
SYNE2-218ENST00000555241 MYT1Q01538 1121 aa30.32■■■□□ 2.44
SYNE2-218ENST00000555241 COL18A1P39060 1754 aa30.32■■■□□ 2.44
SYNE2-218ENST00000555241 NINLQ9Y2I6 1382 aa30.31■■■□□ 2.44
SYNE2-218ENST00000555241 KRT27Q7Z3Y8 459 aa30.31■■■□□ 2.44
SYNE2-218ENST00000555241 HDGFL2Q7Z4V5 671 aaPredicted RBP30.31■■■□□ 2.44
SYNE2-218ENST00000555241 CCDC125Q86Z20 511 aa30.31■■■□□ 2.44
SYNE2-218ENST00000555241 SLC12A5Q9H2X9 1139 aa30.31■■■□□ 2.44
SYNE2-218ENST00000555241 EVA1CP58658 441 aa30.3■■■□□ 2.44
SYNE2-218ENST00000555241 KCNH5Q8NCM2 988 aa30.29■■■□□ 2.44
SYNE2-218ENST00000555241 COL5A2P05997 1499 aaPredicted RBP30.29■■■□□ 2.44
SYNE2-218ENST00000555241 AATKQ6ZMQ8 1374 aa30.28■■■□□ 2.44
SYNE2-218ENST00000555241 TERF2IPQ9NYB0 399 aa30.28■■■□□ 2.44
SYNE2-218ENST00000555241 EDC4Q6P2E9 1401 aaKnown RBP30.28■■■□□ 2.44
SYNE2-218ENST00000555241 RGPD5Q99666 1765 aa30.28■■■□□ 2.44
SYNE2-218ENST00000555241 A0A1W2PP64 1363 aa30.28■■■□□ 2.44
SYNE2-218ENST00000555241 CCER1Q8TC90 406 aaPredicted RBP30.26■■■□□ 2.43
SYNE2-218ENST00000555241 NFAT5O94916 1531 aa30.26■■■□□ 2.43
SYNE2-218ENST00000555241 USP31Q70CQ4 1352 aa30.26■■■□□ 2.43
SYNE2-218ENST00000555241 BLMP54132 1417 aaPredicted RBP30.25■■■□□ 2.43
SYNE2-218ENST00000555241 TMF1P82094 1093 aa30.24■■■□□ 2.43
SYNE2-218ENST00000555241 LARP1Q6PKG0 1096 aaKnown RBP30.24■■■□□ 2.43
SYNE2-218ENST00000555241 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.24■■■□□ 2.43
SYNE2-218ENST00000555241 ZBTB7CA1YPR0 619 aa30.23■■■□□ 2.43
SYNE2-218ENST00000555241 BARGINQ6ZT62 677 aa30.22■■■□□ 2.43
SYNE2-218ENST00000555241 LTN1O94822 1766 aa30.22■■■□□ 2.43
SYNE2-218ENST00000555241 ARHGEF25Q86VW2 580 aa30.21■■■□□ 2.43
SYNE2-218ENST00000555241 USP35Q9P2H5 1018 aa30.21■■■□□ 2.43
SYNE2-218ENST00000555241 ABCC6O95255 1503 aa30.21■■■□□ 2.43
SYNE2-218ENST00000555241 CRB1P82279 1406 aa30.2■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms