RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 SOX12O15370 315 aa10.96□□□□□ -0.66
SYNE2-217ENST00000555022 TMPOP42166 694 aaKnown RBP10.96□□□□□ -0.66
SYNE2-217ENST00000555022 DCTN1Q14203 1278 aa10.96□□□□□ -0.66
SYNE2-217ENST00000555022 TTC12Q9H892 705 aaPredicted RBP10.96□□□□□ -0.66
SYNE2-217ENST00000555022 TMEM63CQ9P1W3 806 aa10.96□□□□□ -0.66
SYNE2-217ENST00000555022 ATP10BO94823 1461 aa10.96□□□□□ -0.66
SYNE2-217ENST00000555022 AEBP2Q6ZN18 517 aaPredicted RBP10.96□□□□□ -0.66
SYNE2-217ENST00000555022 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.96□□□□□ -0.66
SYNE2-217ENST00000555022 PRDM4Q9UKN5 801 aa10.96□□□□□ -0.66
SYNE2-217ENST00000555022 SYCP2Q9BX26 1530 aa10.95□□□□□ -0.66
SYNE2-217ENST00000555022 ZBTB40Q9NUA8 1239 aa10.95□□□□□ -0.66
SYNE2-217ENST00000555022 RIMBP3CA6NJZ7 1639 aa10.95□□□□□ -0.66
SYNE2-217ENST00000555022 RIMBP3BA6NNM3 1639 aa10.95□□□□□ -0.66
SYNE2-217ENST00000555022 RIMBP3Q9UFD9 1639 aa10.95□□□□□ -0.66
SYNE2-217ENST00000555022 ADAMTS12P58397 1594 aa10.95□□□□□ -0.66
SYNE2-217ENST00000555022 KLHL40Q2TBA0 621 aa10.95□□□□□ -0.66
SYNE2-217ENST00000555022 WDR63Q8IWG1 891 aa10.95□□□□□ -0.66
SYNE2-217ENST00000555022 KRT24Q2M2I5 525 aa10.94□□□□□ -0.66
SYNE2-217ENST00000555022 ARHGAP5Q13017 1502 aa10.94□□□□□ -0.66
SYNE2-217ENST00000555022 DDIT3P35638 169 aa10.94□□□□□ -0.66
SYNE2-217ENST00000555022 RBM25P49756 843 aaKnown RBP10.94□□□□□ -0.66
SYNE2-217ENST00000555022 LMBRD1Q9NUN5 540 aa10.94□□□□□ -0.66
SYNE2-217ENST00000555022 CCDC141Q6ZP82 1450 aa10.94□□□□□ -0.66
SYNE2-217ENST00000555022 EIF4G3O43432 1585 aaKnown RBP10.94□□□□□ -0.66
SYNE2-217ENST00000555022 GSPT1P15170 499 aaKnown RBP10.94□□□□□ -0.66
SYNE2-217ENST00000555022 SYNMO15061 1565 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 SPC24Q8NBT2 197 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 USP25Q9UHP3 1055 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 TRIM35Q9UPQ4 493 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 MINK1Q8N4C8 1332 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-217ENST00000555022 KIF16BQ96L93 1317 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 HDAC1Q13547 482 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-217ENST00000555022 ZNF428Q96B54 188 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 PPP1R9BQ96SB3 815 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 UPF3BQ9BZI7 483 aaKnown RBP10.93□□□□□ -0.66
SYNE2-217ENST00000555022 SCAF11Q99590 1463 aaKnown RBP10.93□□□□□ -0.66
SYNE2-217ENST00000555022 FAM83GA6ND36 823 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 CCDC27Q2M243 656 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 GGT6Q6P531 493 aa10.93□□□□□ -0.66
SYNE2-217ENST00000555022 CARMIL2Q6F5E8 1435 aa10.92□□□□□ -0.66
SYNE2-217ENST00000555022 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.92□□□□□ -0.66
SYNE2-217ENST00000555022 CDC45O75419 566 aa10.92□□□□□ -0.66
SYNE2-217ENST00000555022 PTPRGP23470 1445 aa10.92□□□□□ -0.66
SYNE2-217ENST00000555022 NEK4P51957 841 aa10.92□□□□□ -0.66
SYNE2-217ENST00000555022 CDC42BPAQ5VT25 1732 aa10.92□□□□□ -0.66
SYNE2-217ENST00000555022 SNX21Q969T3 373 aa10.92□□□□□ -0.66
SYNE2-217ENST00000555022 UGGT1Q9NYU2 1555 aa10.92□□□□□ -0.66
SYNE2-217ENST00000555022 ITSN2Q9NZM3 1697 aa10.92□□□□□ -0.66
SYNE2-217ENST00000555022 NINLQ9Y2I6 1382 aa10.92□□□□□ -0.66
SYNE2-217ENST00000555022 PRKAR2BP31323 418 aa10.91□□□□□ -0.66
SYNE2-217ENST00000555022 SIRT2Q8IXJ6 389 aa10.91□□□□□ -0.66
SYNE2-217ENST00000555022 DDX54Q8TDD1 881 aaKnown RBP10.91□□□□□ -0.66
SYNE2-217ENST00000555022 PBRM1Q86U86 1689 aa10.91□□□□□ -0.66
SYNE2-217ENST00000555022 GADD45BO75293 160 aaPredicted RBP10.91□□□□□ -0.66
SYNE2-217ENST00000555022 CIZ1Q9ULV3 898 aaPredicted RBP10.91□□□□□ -0.66
SYNE2-217ENST00000555022 ZKSCAN5Q9Y2L8 839 aa10.91□□□□□ -0.66
SYNE2-217ENST00000555022 SPAG9O60271 1321 aaKnown RBP10.91□□□□□ -0.66
SYNE2-217ENST00000555022 GRIN2AQ12879 1464 aa10.91□□□□□ -0.66
SYNE2-217ENST00000555022 IPO8O15397 1037 aaKnown RBP10.91□□□□□ -0.66
SYNE2-217ENST00000555022 SLC4A10Q6U841 1118 aa10.91□□□□□ -0.66
SYNE2-217ENST00000555022 NECTIN2Q92692 538 aa10.91□□□□□ -0.66
SYNE2-217ENST00000555022 TARBP1Q13395 1621 aaKnown RBP10.9□□□□□ -0.66
SYNE2-217ENST00000555022 MAP4K4O95819 1239 aaPredicted RBP10.9□□□□□ -0.66
SYNE2-217ENST00000555022 BMP2KLQ5H9B9 411 aa10.9□□□□□ -0.66
SYNE2-217ENST00000555022 ABCC2Q92887 1545 aa10.9□□□□□ -0.67
SYNE2-217ENST00000555022 PPP4R3BQ5MIZ7 849 aa10.9□□□□□ -0.67
SYNE2-217ENST00000555022 NOL7Q9UMY1 257 aaKnown RBP10.9□□□□□ -0.67
SYNE2-217ENST00000555022 ZBTB22O15209 634 aa10.89□□□□□ -0.67
SYNE2-217ENST00000555022 PHACTR3Q96KR7 559 aa10.89□□□□□ -0.67
SYNE2-217ENST00000555022 ZDHHC9Q9Y397 364 aa10.89□□□□□ -0.67
SYNE2-217ENST00000555022 CROCC2H7BZ55 1655 aa10.89□□□□□ -0.67
SYNE2-217ENST00000555022 ERVK-7P63135 1459 aa10.88□□□□□ -0.67
SYNE2-217ENST00000555022 VGLL3A8MV65 326 aa10.88□□□□□ -0.67
SYNE2-217ENST00000555022 RILPL2Q969X0 211 aa10.88□□□□□ -0.67
SYNE2-217ENST00000555022 ZBTB9Q96C00 473 aa10.88□□□□□ -0.67
SYNE2-217ENST00000555022 ABCC10Q5T3U5 1492 aa10.88□□□□□ -0.67
SYNE2-217ENST00000555022 POLR3AO14802 1390 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-217ENST00000555022 MIS18AQ9NYP9 233 aa10.88□□□□□ -0.67
SYNE2-217ENST00000555022 PPIP5K1Q6PFW1 1433 aa10.87□□□□□ -0.67
SYNE2-217ENST00000555022 HCLS1P14317 486 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-217ENST00000555022 ATP2B3Q16720 1220 aa10.87□□□□□ -0.67
SYNE2-217ENST00000555022 SASS6Q6UVJ0 657 aa10.87□□□□□ -0.67
SYNE2-217ENST00000555022 ISY1Q9ULR0 285 aaKnown RBP10.87□□□□□ -0.67
SYNE2-217ENST00000555022 VIRMAQ69YN4 1812 aaKnown RBP10.87□□□□□ -0.67
SYNE2-217ENST00000555022 TRIM6-TRIM34B2RNG4 842 aa10.87□□□□□ -0.67
SYNE2-217ENST00000555022 SDSP20132 328 aa10.87□□□□□ -0.67
SYNE2-217ENST00000555022 KIAA2012Q0VF49 1180 aa10.87□□□□□ -0.67
SYNE2-217ENST00000555022 PLEKHM2Q8IWE5 1019 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 ANO2Q9NQ90 1003 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 FIBPO43427 364 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 U2AF2P26368 475 aaKnown RBP eCLIP10.86□□□□□ -0.67
SYNE2-217ENST00000555022 NUCB2P80303 420 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 C8orf58Q8NAV2 365 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 CCDC39Q9UFE4 941 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 MYO5CQ9NQX4 1742 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 ZBTB7BO15156 539 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-217ENST00000555022 ST18O60284 1047 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 TRERF1Q96PN7 1200 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 TSPY26PQ9H489 355 aa10.86□□□□□ -0.67
SYNE2-217ENST00000555022 SAMD9LQ8IVG5 1584 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms