RNA–Protein interactions for RNA: ENST00000554956.5

PSMC6-208, Transcript of proteasome 26S subunit, ATPase 6, human

TSL 3

Gene PSMC6, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMC6-208	ENST00000554956	SH3BP2	P78314	561 aa		10.74	□□□□□ -0.69
PSMC6-208	ENST00000554956	SNRK	Q9NRH2	765 aa		10.73	□□□□□ -0.69
PSMC6-208	ENST00000554956	GDF9	O60383	454 aa		10.72	□□□□□ -0.69
PSMC6-208	ENST00000554956	ZNF511	Q8NB15	262 aa		10.72	□□□□□ -0.69
PSMC6-208	ENST00000554956	TRIM34	Q9BYJ4	488 aa		10.72	□□□□□ -0.69
PSMC6-208	ENST00000554956	PDZRN3	Q9UPQ7	1066 aa		10.72	□□□□□ -0.69
PSMC6-208	ENST00000554956	WNT7B	P56706	349 aa		10.71	□□□□□ -0.69
PSMC6-208	ENST00000554956	RC3H1	Q5TC82	1133 aa	Known RBP	10.71	□□□□□ -0.69
PSMC6-208	ENST00000554956	MTMR14	Q8NCE2	650 aa		10.71	□□□□□ -0.69
PSMC6-208	ENST00000554956	IRX2	Q9BZI1	471 aa	Predicted RBP	10.71	□□□□□ -0.69
PSMC6-208	ENST00000554956	BANK1	Q8NDB2	785 aa		10.7	□□□□□ -0.7
PSMC6-208	ENST00000554956	FOXJ1	Q92949	421 aa		10.7	□□□□□ -0.7
PSMC6-208	ENST00000554956	GJD4	Q96KN9	370 aa	Predicted RBP	10.7	□□□□□ -0.7
PSMC6-208	ENST00000554956	WNT7A	O00755	349 aa		10.69	□□□□□ -0.7
PSMC6-208	ENST00000554956	GFRA3	O60609	400 aa		10.69	□□□□□ -0.7
PSMC6-208	ENST00000554956	MRGPRX2	Q96LB1	330 aa		10.69	□□□□□ -0.7
PSMC6-208	ENST00000554956	FKBPL	Q9UIM3	349 aa		10.68	□□□□□ -0.7
PSMC6-208	ENST00000554956	PRR20E	P86478	221 aa		10.67	□□□□□ -0.7
PSMC6-208	ENST00000554956	PRR20C	P86479	221 aa		10.67	□□□□□ -0.7
PSMC6-208	ENST00000554956	PRR20D	P86480	221 aa		10.67	□□□□□ -0.7
PSMC6-208	ENST00000554956	PRR20B	P86481	221 aa		10.67	□□□□□ -0.7
PSMC6-208	ENST00000554956	PRR20A	P86496	221 aa		10.67	□□□□□ -0.7
PSMC6-208	ENST00000554956	EHBP1	Q8NDI1	1231 aa		10.67	□□□□□ -0.7
PSMC6-208	ENST00000554956	C4orf48	Q5BLP8	95 aa		10.66	□□□□□ -0.7
PSMC6-208	ENST00000554956	NBPF14	Q5TI25	921 aa		10.66	□□□□□ -0.7
PSMC6-208	ENST00000554956	ARMC2	Q8NEN0	867 aa		10.66	□□□□□ -0.7
PSMC6-208	ENST00000554956	NRG2	O14511	850 aa	Predicted RBP	10.64	□□□□□ -0.71
PSMC6-208	ENST00000554956	AGER	Q15109	404 aa		10.64	□□□□□ -0.71
PSMC6-208	ENST00000554956	MCM6	Q14566	821 aa		10.63	□□□□□ -0.71
PSMC6-208	ENST00000554956	SH3BP5L	Q7L8J4	393 aa		10.63	□□□□□ -0.71
PSMC6-208	ENST00000554956	TOR4A	Q9NXH8	423 aa		10.63	□□□□□ -0.71
PSMC6-208	ENST00000554956	MAGEB6P1	A0A0J9YX57	407 aa		10.62	□□□□□ -0.71
PSMC6-208	ENST00000554956	GPR37L1	O60883	481 aa		10.62	□□□□□ -0.71
PSMC6-208	ENST00000554956	CYP4X1	Q8N118	509 aa		10.62	□□□□□ -0.71
PSMC6-208	ENST00000554956	CARD14	Q9BXL6	1004 aa		10.62	□□□□□ -0.71
PSMC6-208	ENST00000554956	TLL2	Q9Y6L7	1015 aa		10.62	□□□□□ -0.71
PSMC6-208	ENST00000554956	SIAH2	O43255	324 aa		10.61	□□□□□ -0.71
PSMC6-208	ENST00000554956	SH3RF1	Q7Z6J0	888 aa		10.61	□□□□□ -0.71
PSMC6-208	ENST00000554956	BPHL	Q86WA6	291 aa	Predicted RBP	10.61	□□□□□ -0.71
PSMC6-208	ENST00000554956	OCSTAMP	Q9BR26	566 aa		10.61	□□□□□ -0.71
PSMC6-208	ENST00000554956	TTC24	A2A3L6	582 aa	Predicted RBP	10.6	□□□□□ -0.71
PSMC6-208	ENST00000554956	VARS	P26640	1264 aa	Known RBP	10.6	□□□□□ -0.71
PSMC6-208	ENST00000554956	SNIP1	Q8TAD8	396 aa	Known RBP	10.6	□□□□□ -0.71
PSMC6-208	ENST00000554956	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.6	□□□□□ -0.71	4e-7	■■■■■ 29.5
PSMC6-208	ENST00000554956	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.59	□□□□□ -0.71
PSMC6-208	ENST00000554956	FAM187A	A6NFU0	413 aa		10.59	□□□□□ -0.71
PSMC6-208	ENST00000554956		J3QL48	77 aa		10.59	□□□□□ -0.71
PSMC6-208	ENST00000554956	SOCS7	O14512	581 aa		10.59	□□□□□ -0.71
PSMC6-208	ENST00000554956	PDXDC2P	Q6P474	469 aa		10.59	□□□□□ -0.71
PSMC6-208	ENST00000554956	ARHGAP9	Q9BRR9	750 aa		10.59	□□□□□ -0.71
PSMC6-208	ENST00000554956	TBC1D2B	Q9UPU7	963 aa		10.59	□□□□□ -0.71
PSMC6-208	ENST00000554956	LAPTM4A	Q15012	233 aa		10.58	□□□□□ -0.72
PSMC6-208	ENST00000554956	PNMA1	Q8ND90	353 aa		10.58	□□□□□ -0.72
PSMC6-208	ENST00000554956	NDUFB9	Q9Y6M9	179 aa		10.58	□□□□□ -0.72
PSMC6-208	ENST00000554956	ALDH1A1	P00352	501 aa		10.57	□□□□□ -0.72
PSMC6-208	ENST00000554956	SMPD1	P17405	629 aa		10.57	□□□□□ -0.72
PSMC6-208	ENST00000554956	FAM174A	Q8TBP5	190 aa		10.57	□□□□□ -0.72
PSMC6-208	ENST00000554956	C1QTNF2	Q9BXJ5	285 aa		10.57	□□□□□ -0.72
PSMC6-208	ENST00000554956	ERFE	Q4G0M1	354 aa		10.56	□□□□□ -0.72
PSMC6-208	ENST00000554956		Q6ZNB5	142 aa		10.56	□□□□□ -0.72
PSMC6-208	ENST00000554956	APBB1	O00213	710 aa		10.55	□□□□□ -0.72
PSMC6-208	ENST00000554956	PTK2	Q05397	1052 aa		10.55	□□□□□ -0.72
PSMC6-208	ENST00000554956	ARID5B	Q14865	1188 aa		10.55	□□□□□ -0.72
PSMC6-208	ENST00000554956	GDPD2	Q9HCC8	539 aa		10.55	□□□□□ -0.72
PSMC6-208	ENST00000554956	FBXO45	P0C2W1	286 aa		10.54	□□□□□ -0.72
PSMC6-208	ENST00000554956	PKDCC	Q504Y2	493 aa		10.54	□□□□□ -0.72
PSMC6-208	ENST00000554956	ADAM32	Q8TC27	787 aa		10.54	□□□□□ -0.72
PSMC6-208	ENST00000554956	LCE2B	O14633	110 aa		10.53	□□□□□ -0.72
PSMC6-208	ENST00000554956	ZBTB33	Q86T24	672 aa		10.53	□□□□□ -0.72
PSMC6-208	ENST00000554956	POM121	Q96HA1	1249 aa		10.53	□□□□□ -0.72
PSMC6-208	ENST00000554956	GPSM3	Q9Y4H4	160 aa		10.52	□□□□□ -0.73
PSMC6-208	ENST00000554956	ZBBX	A8MT70	800 aa		10.51	□□□□□ -0.73
PSMC6-208	ENST00000554956	ABL2	P42684	1182 aa		10.51	□□□□□ -0.73
PSMC6-208	ENST00000554956	IRF5	Q13568	498 aa		10.51	□□□□□ -0.73
PSMC6-208	ENST00000554956	TRMT44	Q8IYL2	757 aa	Known RBP	10.51	□□□□□ -0.73
PSMC6-208	ENST00000554956	HPS1	Q92902	700 aa		10.51	□□□□□ -0.73
PSMC6-208	ENST00000554956	WASF2	Q9Y6W5	498 aa		10.51	□□□□□ -0.73
PSMC6-208	ENST00000554956	DGAT1	O75907	488 aa		10.5	□□□□□ -0.73
PSMC6-208	ENST00000554956	FLII	Q13045	1269 aa		10.5	□□□□□ -0.73
PSMC6-208	ENST00000554956	CDK15	Q96Q40	435 aa		10.5	□□□□□ -0.73
PSMC6-208	ENST00000554956	COG6	Q9Y2V7	657 aa		10.5	□□□□□ -0.73
PSMC6-208	ENST00000554956	ADH1C	P00326	375 aa		10.49	□□□□□ -0.73
PSMC6-208	ENST00000554956	MPND	Q8N594	471 aa		10.49	□□□□□ -0.73
PSMC6-208	ENST00000554956	SLC10A4	Q96EP9	437 aa		10.49	□□□□□ -0.73
PSMC6-208	ENST00000554956	MYT1	Q01538	1121 aa		10.48	□□□□□ -0.73
PSMC6-208	ENST00000554956	VASH1	Q7L8A9	365 aa	Predicted RBP	10.48	□□□□□ -0.73
PSMC6-208	ENST00000554956	ST8SIA5	O15466	376 aa		10.47	□□□□□ -0.73
PSMC6-208	ENST00000554956	NR3C2	P08235	984 aa		10.47	□□□□□ -0.73
PSMC6-208	ENST00000554956	UBTF	P17480	764 aa	Known RBP	10.47	□□□□□ -0.73
PSMC6-208	ENST00000554956	FSHR	P23945	695 aa		10.47	□□□□□ -0.73
PSMC6-208	ENST00000554956	GRM5	P41594	1212 aa		10.47	□□□□□ -0.73
PSMC6-208	ENST00000554956	NR1H3	Q13133	447 aa		10.47	□□□□□ -0.73
PSMC6-208	ENST00000554956	NNT	Q13423	1086 aa		10.47	□□□□□ -0.73
PSMC6-208	ENST00000554956	PRM3	Q9NNZ6	103 aa		10.47	□□□□□ -0.73
PSMC6-208	ENST00000554956	MAP4K5	Q9Y4K4	846 aa		10.46	□□□□□ -0.73
PSMC6-208	ENST00000554956	PCDHB9	Q9Y5E1	797 aa		10.46	□□□□□ -0.73
PSMC6-208	ENST00000554956	RB1CC1	Q8TDY2	1594 aa		10.46	□□□□□ -0.74
PSMC6-208	ENST00000554956	AVP	P01185	164 aa		10.45	□□□□□ -0.74
PSMC6-208	ENST00000554956	DZIP3	Q86Y13	1208 aa	Known RBP	10.45	□□□□□ -0.74
PSMC6-208	ENST00000554956	VAC14	Q08AM6	782 aa		10.44	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms