RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 CARD14Q9BXL6 1004 aa19.77■□□□□ 0.76
SHMT2-210ENST00000553950 ORAI2Q96SN7 254 aa19.76■□□□□ 0.75
SHMT2-210ENST00000553950 PXDNQ92626 1479 aa19.75■□□□□ 0.75
SHMT2-210ENST00000553950 PSME1Q06323 249 aa19.75■□□□□ 0.75
SHMT2-210ENST00000553950 AMER1Q5JTC6 1135 aaPredicted RBP19.75■□□□□ 0.75
SHMT2-210ENST00000553950 BRINP3Q76B58 766 aa19.75■□□□□ 0.75
SHMT2-210ENST00000553950 CERKQ8TCT0 537 aa19.75■□□□□ 0.75
SHMT2-210ENST00000553950 SBNO1A3KN83 1393 aa19.74■□□□□ 0.75
SHMT2-210ENST00000553950 PARD3Q8TEW0 1356 aa19.74■□□□□ 0.75
SHMT2-210ENST00000553950 RALBP1Q15311 655 aa19.74■□□□□ 0.75
SHMT2-210ENST00000553950 TTC21BQ7Z4L5 1316 aa19.74■□□□□ 0.75
SHMT2-210ENST00000553950 PHLPP1O60346 1717 aa19.73■□□□□ 0.75
SHMT2-210ENST00000553950 OVOS2A0A0J9YW53 1432 aa19.72■□□□□ 0.75
SHMT2-210ENST00000553950 MED1Q15648 1581 aaPredicted RBP19.72■□□□□ 0.75
SHMT2-210ENST00000553950 TNS3Q68CZ2 1445 aa19.72■□□□□ 0.75
SHMT2-210ENST00000553950 OVOS2Q6IE36 1432 aa19.72■□□□□ 0.75
SHMT2-210ENST00000553950 MARF1Q9Y4F3 1742 aaKnown RBP19.72■□□□□ 0.75
SHMT2-210ENST00000553950 ARHGEF10O15013 1369 aa19.7■□□□□ 0.74
SHMT2-210ENST00000553950 USP31Q70CQ4 1352 aa19.7■□□□□ 0.74
SHMT2-210ENST00000553950 FOXO3O43524 673 aa19.7■□□□□ 0.74
SHMT2-210ENST00000553950 PRKRIP1Q9H875 184 aaPredicted RBP19.7■□□□□ 0.74
SHMT2-210ENST00000553950 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.69■□□□□ 0.74
SHMT2-210ENST00000553950 SCAF1Q9H7N4 1312 aaKnown RBP19.69■□□□□ 0.74
SHMT2-210ENST00000553950 UBAP1LF5GYI3 381 aa19.68■□□□□ 0.74
SHMT2-210ENST00000553950 CC2D1BQ5T0F9 858 aaKnown RBP19.68■□□□□ 0.74
SHMT2-210ENST00000553950 KRT28Q7Z3Y7 464 aa19.68■□□□□ 0.74
SHMT2-210ENST00000553950 COG3Q96JB2 828 aa19.68■□□□□ 0.74
SHMT2-210ENST00000553950 MYBBP1AQ9BQG0 1328 aaKnown RBP19.68■□□□□ 0.74
SHMT2-210ENST00000553950 PHRF1Q9P1Y6 1649 aaKnown RBP19.67■□□□□ 0.74
SHMT2-210ENST00000553950 FYB1O15117 783 aa19.67■□□□□ 0.74
SHMT2-210ENST00000553950 CRYBG1Q9Y4K1 1723 aa19.67■□□□□ 0.74
SHMT2-210ENST00000553950 COL16A1Q07092 1604 aaPredicted RBP19.66■□□□□ 0.74
SHMT2-210ENST00000553950 PAK3O75914 559 aaPredicted RBP19.66■□□□□ 0.74
SHMT2-210ENST00000553950 MORC1Q86VD1 984 aa19.66■□□□□ 0.74
SHMT2-210ENST00000553950 SOS2Q07890 1332 aaPredicted RBP19.66■□□□□ 0.74
SHMT2-210ENST00000553950 SLIT3O75094 1523 aa19.66■□□□□ 0.74
SHMT2-210ENST00000553950 ABCA3Q99758 1704 aa19.65■□□□□ 0.74
SHMT2-210ENST00000553950 COL22A1Q8NFW1 1626 aaPredicted RBP19.65■□□□□ 0.74
SHMT2-210ENST00000553950 MAP2P11137 1827 aaKnown RBP19.65■□□□□ 0.74
SHMT2-210ENST00000553950 NME9Q86XW9 330 aa19.64■□□□□ 0.73
SHMT2-210ENST00000553950 AATKQ6ZMQ8 1374 aa19.63■□□□□ 0.73
SHMT2-210ENST00000553950 ABTB2Q8N961 1025 aa19.63■□□□□ 0.73
SHMT2-210ENST00000553950 GGNBP2Q9H3C7 697 aa19.63■□□□□ 0.73
SHMT2-210ENST00000553950 LTN1O94822 1766 aa19.62■□□□□ 0.73
SHMT2-210ENST00000553950 SPATA31A3Q5VYP0 1347 aa19.62■□□□□ 0.73
SHMT2-210ENST00000553950 NLRP13Q86W25 1043 aa19.62■□□□□ 0.73
SHMT2-210ENST00000553950 SHPRHQ149N8 1683 aa19.62■□□□□ 0.73
SHMT2-210ENST00000553950 SMG6Q86US8 1419 aaKnown RBP19.61■□□□□ 0.73
SHMT2-210ENST00000553950 CCER2I3L3R5 266 aa19.61■□□□□ 0.73
SHMT2-210ENST00000553950 USP19O94966 1318 aa19.6■□□□□ 0.73
SHMT2-210ENST00000553950 NLRP6P59044 892 aa19.6■□□□□ 0.73
SHMT2-210ENST00000553950 XPCQ01831 940 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-210ENST00000553950 ABCC6O95255 1503 aa19.6■□□□□ 0.73
SHMT2-210ENST00000553950 KCNH5Q8NCM2 988 aa19.59■□□□□ 0.73
SHMT2-210ENST00000553950 NFAT5O94916 1531 aa19.59■□□□□ 0.73
SHMT2-210ENST00000553950 CDK12Q9NYV4 1490 aaPredicted RBP19.59■□□□□ 0.73
SHMT2-210ENST00000553950 KIF24Q5T7B8 1368 aa19.58■□□□□ 0.73
SHMT2-210ENST00000553950 PIP4K2BP78356 416 aa19.58■□□□□ 0.72
SHMT2-210ENST00000553950 CNGB1Q14028 1251 aaPredicted RBP19.58■□□□□ 0.72
SHMT2-210ENST00000553950 LRRC59Q96AG4 307 aaKnown RBP19.57■□□□□ 0.72
SHMT2-210ENST00000553950 PPP2R1AP30153 589 aa19.56■□□□□ 0.72
SHMT2-210ENST00000553950 LMOD2Q6P5Q4 547 aa19.56■□□□□ 0.72
SHMT2-210ENST00000553950 MIER1Q8N108 512 aa19.56■□□□□ 0.72
SHMT2-210ENST00000553950 DDX17Q92841 729 aaKnown RBP19.56■□□□□ 0.72
SHMT2-210ENST00000553950 RTL1A6NKG5 1358 aa19.56■□□□□ 0.72
SHMT2-210ENST00000553950 CFAP53Q96M91 514 aa19.54■□□□□ 0.72
SHMT2-210ENST00000553950 TNNT2P45379 298 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-210ENST00000553950 ZRANB1Q9UGI0 708 aa19.51■□□□□ 0.71
SHMT2-210ENST00000553950 PNPLA6Q8IY17 1366 aa19.51■□□□□ 0.71
SHMT2-210ENST00000553950 FAM208AQ9UK61 1670 aaKnown RBP19.51■□□□□ 0.71
SHMT2-210ENST00000553950 PEAK1Q9H792 1746 aa19.51■□□□□ 0.71
SHMT2-210ENST00000553950 FLT4P35916 1363 aa19.5■□□□□ 0.71
SHMT2-210ENST00000553950 NUTM2GQ5VZR2 741 aa19.5■□□□□ 0.71
SHMT2-210ENST00000553950 MRS2Q9HD23 443 aa19.5■□□□□ 0.71
SHMT2-210ENST00000553950 CPDO75976 1380 aa19.48■□□□□ 0.71
SHMT2-210ENST00000553950 INSRP06213 1382 aa19.48■□□□□ 0.71
SHMT2-210ENST00000553950 JCADQ9P266 1359 aa19.48■□□□□ 0.71
SHMT2-210ENST00000553950 COL3A1P02461 1466 aaPredicted RBP19.48■□□□□ 0.71
SHMT2-210ENST00000553950 GCP02774 474 aa19.47■□□□□ 0.71
SHMT2-210ENST00000553950 HAP1P54257 671 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-210ENST00000553950 BLMP54132 1417 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-210ENST00000553950 COL14A1Q05707 1796 aaKnown RBP19.47■□□□□ 0.71
SHMT2-210ENST00000553950 MTHFSP49914 203 aa19.46■□□□□ 0.71
SHMT2-210ENST00000553950 POLKQ9UBT6 870 aa19.46■□□□□ 0.71
SHMT2-210ENST00000553950 MAP3K19Q56UN5 1328 aa19.45■□□□□ 0.7
SHMT2-210ENST00000553950 SOX12O15370 315 aa19.44■□□□□ 0.7
SHMT2-210ENST00000553950 COL18A1P39060 1754 aa19.44■□□□□ 0.7
SHMT2-210ENST00000553950 LMO7Q8WWI1 1683 aa19.43■□□□□ 0.7
SHMT2-210ENST00000553950 AMPHP49418 695 aa19.43■□□□□ 0.7
SHMT2-210ENST00000553950 RRS1Q15050 365 aaKnown RBP19.43■□□□□ 0.7
SHMT2-210ENST00000553950 NUDCQ9Y266 331 aa19.42■□□□□ 0.7
SHMT2-210ENST00000553950 EMILIN1Q9Y6C2 1016 aa19.42■□□□□ 0.7
SHMT2-210ENST00000553950 NWD2Q9ULI1 1742 aa19.42■□□□□ 0.7
SHMT2-210ENST00000553950 RGPD5Q99666 1765 aa19.42■□□□□ 0.7
SHMT2-210ENST00000553950 PLCH1Q4KWH8 1693 aa19.41■□□□□ 0.7
SHMT2-210ENST00000553950 PPM1GO15355 546 aaPredicted RBP19.41■□□□□ 0.7
SHMT2-210ENST00000553950 WDR43Q15061 677 aaKnown RBP eCLIP19.41■□□□□ 0.7
SHMT2-210ENST00000553950 ARHGEF25Q86VW2 580 aa19.41■□□□□ 0.7
SHMT2-210ENST00000553950 RGPD1P0DJD0 1748 aa19.41■□□□□ 0.7
SHMT2-210ENST00000553950 SPATA31A6Q5VVP1 1343 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms