RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 ARHGEF10O15013 1369 aa26.2■■□□□ 1.79
SHMT2-206ENST00000553529 ACEP12821 1306 aa26.19■■□□□ 1.78
SHMT2-206ENST00000553529 SRPK2P78362 688 aaKnown RBP26.19■■□□□ 1.78
SHMT2-206ENST00000553529 FAM83GA6ND36 823 aa26.18■■□□□ 1.78
SHMT2-206ENST00000553529 PPIP5K1Q6PFW1 1433 aa26.17■■□□□ 1.78
SHMT2-206ENST00000553529 PHRF1Q9P1Y6 1649 aaKnown RBP26.17■■□□□ 1.78
SHMT2-206ENST00000553529 RALGAPBQ86X10 1494 aa26.17■■□□□ 1.78
SHMT2-206ENST00000553529 POLR3AO14802 1390 aaPredicted RBP26.16■■□□□ 1.78
SHMT2-206ENST00000553529 NRAPQ86VF7 1730 aa26.16■■□□□ 1.78
SHMT2-206ENST00000553529 UNC5CLQ8IV45 518 aa26.15■■□□□ 1.78
SHMT2-206ENST00000553529 CCDC61Q9Y6R9 512 aa26.15■■□□□ 1.78
SHMT2-206ENST00000553529 TONSLQ96HA7 1378 aa26.13■■□□□ 1.77
SHMT2-206ENST00000553529 GJD4Q96KN9 370 aaPredicted RBP26.13■■□□□ 1.77
SHMT2-206ENST00000553529 NWD2Q9ULI1 1742 aa26.11■■□□□ 1.77
SHMT2-206ENST00000553529 PLEKHG3A1L390 1219 aa26.11■■□□□ 1.77
SHMT2-206ENST00000553529 CABP1Q9NZU7 370 aa26.1■■□□□ 1.77
SHMT2-206ENST00000553529 BRWD3Q6RI45 1802 aa26.09■■□□□ 1.77
SHMT2-206ENST00000553529 CHRNA2Q15822 529 aa26.08■■□□□ 1.77
SHMT2-206ENST00000553529 NRKQ7Z2Y5 1582 aa26.07■■□□□ 1.76
SHMT2-206ENST00000553529 COL14A1Q05707 1796 aaKnown RBP26.07■■□□□ 1.76
SHMT2-206ENST00000553529 BTG4Q9NY30 223 aa26.07■■□□□ 1.76
SHMT2-206ENST00000553529 KIAA0232Q92628 1395 aa26.06■■□□□ 1.76
SHMT2-206ENST00000553529 ZC3H6P61129 1189 aaKnown RBP26.05■■□□□ 1.76
SHMT2-206ENST00000553529 CARD11Q9BXL7 1154 aa26.05■■□□□ 1.76
SHMT2-206ENST00000553529 CCDC9Q9Y3X0 531 aaKnown RBP26.04■■□□□ 1.76
SHMT2-206ENST00000553529 VPS72Q15906 364 aa26.03■■□□□ 1.76
SHMT2-206ENST00000553529 EVC2Q86UK5 1308 aa26.02■■□□□ 1.76
SHMT2-206ENST00000553529 USP6P35125 1406 aa26.02■■□□□ 1.76
SHMT2-206ENST00000553529 PIK3C2AO00443 1686 aa26.01■■□□□ 1.75
SHMT2-206ENST00000553529 ABTB2Q8N961 1025 aa26.01■■□□□ 1.75
SHMT2-206ENST00000553529 PRDM11Q9NQV5 511 aa26■■□□□ 1.75
SHMT2-206ENST00000553529 AKAP12Q02952 1782 aa26■■□□□ 1.75
SHMT2-206ENST00000553529 SEPT12Q8IYM1 358 aa25.98■■□□□ 1.75
SHMT2-206ENST00000553529 PCGF6Q9BYE7 350 aa25.98■■□□□ 1.75
SHMT2-206ENST00000553529 SSH2Q76I76 1423 aa25.97■■□□□ 1.75
SHMT2-206ENST00000553529 ATAD2Q6PL18 1390 aa25.97■■□□□ 1.75
SHMT2-206ENST00000553529 USP19O94966 1318 aa25.96■■□□□ 1.75
SHMT2-206ENST00000553529 FAM98CQ17RN3 349 aaKnown RBP25.96■■□□□ 1.75
SHMT2-206ENST00000553529 EP400Q96L91 3159 aa25.95■■□□□ 1.75
SHMT2-206ENST00000553529 STRN4Q9NRL3 753 aa25.95■■□□□ 1.74
SHMT2-206ENST00000553529 CAMTA1Q9Y6Y1 1673 aa25.94■■□□□ 1.74
SHMT2-206ENST00000553529 LMO7Q8WWI1 1683 aa25.93■■□□□ 1.74
SHMT2-206ENST00000553529 CD163L1Q9NR16 1453 aa25.92■■□□□ 1.74
SHMT2-206ENST00000553529 ZBTB7CA1YPR0 619 aa25.92■■□□□ 1.74
SHMT2-206ENST00000553529 FAM182BQ5T319 152 aa25.92■■□□□ 1.74
SHMT2-206ENST00000553529 ZRANB1Q9UGI0 708 aa25.92■■□□□ 1.74
SHMT2-206ENST00000553529 A0A0G2JS52 829 aa25.91■■□□□ 1.74
SHMT2-206ENST00000553529 MYT1Q01538 1121 aa25.91■■□□□ 1.74
SHMT2-206ENST00000553529 MON2Q7Z3U7 1717 aa25.91■■□□□ 1.74
SHMT2-206ENST00000553529 SPATA31A5Q5VU36 1347 aa25.9■■□□□ 1.74
SHMT2-206ENST00000553529 SPATA31A7Q8IWB4 1347 aa25.9■■□□□ 1.74
SHMT2-206ENST00000553529 SLIT3O75094 1523 aa25.9■■□□□ 1.74
SHMT2-206ENST00000553529 SBNO2Q9Y2G9 1366 aa25.9■■□□□ 1.74
SHMT2-206ENST00000553529 CPSF1Q10570 1443 aaKnown RBP25.89■■□□□ 1.74
SHMT2-206ENST00000553529 GCP02774 474 aa25.89■■□□□ 1.74
SHMT2-206ENST00000553529 NLRP6P59044 892 aa25.89■■□□□ 1.74
SHMT2-206ENST00000553529 THSD7AQ9UPZ6 1657 aa25.89■■□□□ 1.73
SHMT2-206ENST00000553529 ST20-MTHFSA0A0A6YYL1 179 aa25.88■■□□□ 1.73
SHMT2-206ENST00000553529 SOX12O15370 315 aa25.88■■□□□ 1.73
SHMT2-206ENST00000553529 ONECUT3O60422 494 aaPredicted RBP25.88■■□□□ 1.73
SHMT2-206ENST00000553529 USP35Q9P2H5 1018 aa25.88■■□□□ 1.73
SHMT2-206ENST00000553529 TTC21BQ7Z4L5 1316 aa25.88■■□□□ 1.73
SHMT2-206ENST00000553529 NLRP13Q86W25 1043 aa25.87■■□□□ 1.73
SHMT2-206ENST00000553529 TESK2Q96S53 571 aa25.87■■□□□ 1.73
SHMT2-206ENST00000553529 LARP1Q6PKG0 1096 aaKnown RBP25.86■■□□□ 1.73
SHMT2-206ENST00000553529 SLC12A5Q9H2X9 1139 aa25.86■■□□□ 1.73
SHMT2-206ENST00000553529 SPATA31A1Q5TZJ5 1347 aa25.85■■□□□ 1.73
SHMT2-206ENST00000553529 CPDO75976 1380 aa25.84■■□□□ 1.73
SHMT2-206ENST00000553529 KTN1Q86UP2 1357 aaKnown RBP25.84■■□□□ 1.73
SHMT2-206ENST00000553529 TMC1Q8TDI8 760 aa25.84■■□□□ 1.73
SHMT2-206ENST00000553529 COL18A1P39060 1754 aa25.83■■□□□ 1.73
SHMT2-206ENST00000553529 KRT27Q7Z3Y8 459 aa25.83■■□□□ 1.73
SHMT2-206ENST00000553529 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.83■■□□□ 1.73
SHMT2-206ENST00000553529 RGPD5Q99666 1765 aa25.82■■□□□ 1.72
SHMT2-206ENST00000553529 COL5A2P05997 1499 aaPredicted RBP25.81■■□□□ 1.72
SHMT2-206ENST00000553529 DEFB132Q7Z7B7 95 aa25.81■■□□□ 1.72
SHMT2-206ENST00000553529 NME9Q86XW9 330 aa25.81■■□□□ 1.72
SHMT2-206ENST00000553529 BRD4O60885 1362 aaPredicted RBP25.8■■□□□ 1.72
SHMT2-206ENST00000553529 AXIN2Q9Y2T1 843 aa25.79■■□□□ 1.72
SHMT2-206ENST00000553529 A0A1W2PP64 1363 aa25.79■■□□□ 1.72
SHMT2-206ENST00000553529 USP47Q96K76 1375 aa25.79■■□□□ 1.72
SHMT2-206ENST00000553529 NFAT5O94916 1531 aa25.78■■□□□ 1.72
SHMT2-206ENST00000553529 EVA1CP58658 441 aa25.78■■□□□ 1.72
SHMT2-206ENST00000553529 BLMP54132 1417 aaPredicted RBP25.75■■□□□ 1.71
SHMT2-206ENST00000553529 ZNF692Q9BU19 519 aaPredicted RBP25.75■■□□□ 1.71
SHMT2-206ENST00000553529 TTC21AQ8NDW8 1320 aa25.73■■□□□ 1.71
SHMT2-206ENST00000553529 AATKQ6ZMQ8 1374 aa25.71■■□□□ 1.71
SHMT2-206ENST00000553529 USP54Q70EL1 1684 aa25.71■■□□□ 1.71
SHMT2-206ENST00000553529 ARHGEF25Q86VW2 580 aa25.71■■□□□ 1.71
SHMT2-206ENST00000553529 TNS1Q9HBL0 1735 aaKnown RBP25.69■■□□□ 1.7
SHMT2-206ENST00000553529 LTN1O94822 1766 aa25.69■■□□□ 1.7
SHMT2-206ENST00000553529 TCP11L2Q8N4U5 519 aa25.68■■□□□ 1.7
SHMT2-206ENST00000553529 CRB1P82279 1406 aa25.68■■□□□ 1.7
SHMT2-206ENST00000553529 FBLN1P23142 703 aa25.67■■□□□ 1.7
SHMT2-206ENST00000553529 EDC4Q6P2E9 1401 aaKnown RBP25.67■■□□□ 1.7
SHMT2-206ENST00000553529 HDGFL2Q7Z4V5 671 aaPredicted RBP25.67■■□□□ 1.7
SHMT2-206ENST00000553529 WNK3Q9BYP7 1800 aa25.67■■□□□ 1.7
SHMT2-206ENST00000553529 USP31Q70CQ4 1352 aa25.67■■□□□ 1.7
SHMT2-206ENST00000553529 LRRC37A3O60309 1634 aa25.66■■□□□ 1.7
SHMT2-206ENST00000553529 BARGINQ6ZT62 677 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms