RNA–Protein interactions for RNA: ENST00000550102.5

CHMP1A-208, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 5 BASIC

Gene CHMP1A, Length 803 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-208ENST00000550102 CDK12Q9NYV4 1490 aaPredicted RBP24.46■■□□□ 1.51
CHMP1A-208ENST00000550102 PAK3O75914 559 aaPredicted RBP24.44■■□□□ 1.5
CHMP1A-208ENST00000550102 FNBP4Q8N3X1 1017 aaPredicted RBP24.44■■□□□ 1.5
CHMP1A-208ENST00000550102 CABLES1Q8TDN4 633 aa24.43■■□□□ 1.5
CHMP1A-208ENST00000550102 USP21Q9UK80 565 aa24.43■■□□□ 1.5
CHMP1A-208ENST00000550102 TIMELESSQ9UNS1 1208 aa24.43■■□□□ 1.5
CHMP1A-208ENST00000550102 ATAD2Q6PL18 1390 aa24.42■■□□□ 1.5
CHMP1A-208ENST00000550102 COL14A1Q05707 1796 aaKnown RBP24.42■■□□□ 1.5
CHMP1A-208ENST00000550102 PLEKHG5O94827 1062 aa24.42■■□□□ 1.5
CHMP1A-208ENST00000550102 RXRBP28702 533 aa24.42■■□□□ 1.5
CHMP1A-208ENST00000550102 SLIT2O94813 1529 aa24.41■■□□□ 1.5
CHMP1A-208ENST00000550102 BCL9LQ86UU0 1499 aa24.41■■□□□ 1.5
CHMP1A-208ENST00000550102 ATRNO75882 1429 aa24.41■■□□□ 1.5
CHMP1A-208ENST00000550102 CCER1Q8TC90 406 aaPredicted RBP24.4■■□□□ 1.5
CHMP1A-208ENST00000550102 QTRT2Q9H974 415 aaKnown RBP24.4■■□□□ 1.5
CHMP1A-208ENST00000550102 NRKQ7Z2Y5 1582 aa24.4■■□□□ 1.5
CHMP1A-208ENST00000550102 MON2Q7Z3U7 1717 aa24.4■■□□□ 1.5
CHMP1A-208ENST00000550102 NRAPQ86VF7 1730 aa24.4■■□□□ 1.5
CHMP1A-208ENST00000550102 BRD4O60885 1362 aaPredicted RBP24.4■■□□□ 1.5
CHMP1A-208ENST00000550102 USP6P35125 1406 aa24.39■■□□□ 1.5
CHMP1A-208ENST00000550102 TRPC5Q9UL62 973 aaPredicted RBP24.38■■□□□ 1.49
CHMP1A-208ENST00000550102 RBM6P78332 1123 aaKnown RBP24.37■■□□□ 1.49
CHMP1A-208ENST00000550102 CABP1Q9NZU7 370 aa24.37■■□□□ 1.49
CHMP1A-208ENST00000550102 PIK3C2AO00443 1686 aa24.37■■□□□ 1.49
CHMP1A-208ENST00000550102 RGS12O14924 1447 aa24.36■■□□□ 1.49
CHMP1A-208ENST00000550102 USP47Q96K76 1375 aa24.34■■□□□ 1.49
CHMP1A-208ENST00000550102 GLI3P10071 1580 aa24.32■■□□□ 1.48
CHMP1A-208ENST00000550102 UNC5CLQ8IV45 518 aa24.31■■□□□ 1.48
CHMP1A-208ENST00000550102 ABTB2Q8N961 1025 aa24.31■■□□□ 1.48
CHMP1A-208ENST00000550102 CPSF1Q10570 1443 aaKnown RBP24.3■■□□□ 1.48
CHMP1A-208ENST00000550102 SSH2Q76I76 1423 aa24.3■■□□□ 1.48
CHMP1A-208ENST00000550102 ST20-MTHFSA0A0A6YYL1 179 aa24.3■■□□□ 1.48
CHMP1A-208ENST00000550102 USP19O94966 1318 aa24.3■■□□□ 1.48
CHMP1A-208ENST00000550102 NUTM2GQ5VZR2 741 aa24.29■■□□□ 1.48
CHMP1A-208ENST00000550102 TESK2Q96S53 571 aa24.28■■□□□ 1.48
CHMP1A-208ENST00000550102 SLIT3O75094 1523 aa24.28■■□□□ 1.48
CHMP1A-208ENST00000550102 FAM83GA6ND36 823 aa24.27■■□□□ 1.48
CHMP1A-208ENST00000550102 SLC24A1O60721 1099 aa24.27■■□□□ 1.48
CHMP1A-208ENST00000550102 PRDM11Q9NQV5 511 aa24.27■■□□□ 1.48
CHMP1A-208ENST00000550102 USP54Q70EL1 1684 aa24.27■■□□□ 1.48
CHMP1A-208ENST00000550102 KTN1Q86UP2 1357 aaKnown RBP24.27■■□□□ 1.48
CHMP1A-208ENST00000550102 KIAA0232Q92628 1395 aa24.27■■□□□ 1.48
CHMP1A-208ENST00000550102 ZNF692Q9BU19 519 aaPredicted RBP24.26■■□□□ 1.47
CHMP1A-208ENST00000550102 CD163L1Q9NR16 1453 aa24.26■■□□□ 1.47
CHMP1A-208ENST00000550102 LMO7Q8WWI1 1683 aa24.25■■□□□ 1.47
CHMP1A-208ENST00000550102 NLRP13Q86W25 1043 aa24.25■■□□□ 1.47
CHMP1A-208ENST00000550102 GJD4Q96KN9 370 aaPredicted RBP24.25■■□□□ 1.47
CHMP1A-208ENST00000550102 PUS7Q96PZ0 661 aaKnown RBP24.25■■□□□ 1.47
CHMP1A-208ENST00000550102 NINLQ9Y2I6 1382 aa24.24■■□□□ 1.47
CHMP1A-208ENST00000550102 VPS72Q15906 364 aa24.23■■□□□ 1.47
CHMP1A-208ENST00000550102 TTC21AQ8NDW8 1320 aa24.23■■□□□ 1.47
CHMP1A-208ENST00000550102 BRWD3Q6RI45 1802 aa24.22■■□□□ 1.47
CHMP1A-208ENST00000550102 CPDO75976 1380 aa24.22■■□□□ 1.47
CHMP1A-208ENST00000550102 BTG4Q9NY30 223 aa24.22■■□□□ 1.47
CHMP1A-208ENST00000550102 TTC21BQ7Z4L5 1316 aa24.21■■□□□ 1.47
CHMP1A-208ENST00000550102 TMC1Q8TDI8 760 aa24.21■■□□□ 1.47
CHMP1A-208ENST00000550102 NLRP6P59044 892 aa24.2■■□□□ 1.46
CHMP1A-208ENST00000550102 EDC4Q6P2E9 1401 aaKnown RBP24.19■■□□□ 1.46
CHMP1A-208ENST00000550102 ZC3H6P61129 1189 aaKnown RBP24.19■■□□□ 1.46
CHMP1A-208ENST00000550102 HDGFL2Q7Z4V5 671 aaPredicted RBP24.19■■□□□ 1.46
CHMP1A-208ENST00000550102 CCDC9Q9Y3X0 531 aaKnown RBP24.19■■□□□ 1.46
CHMP1A-208ENST00000550102 A0A1W2PP64 1363 aa24.18■■□□□ 1.46
CHMP1A-208ENST00000550102 MYOM1P52179 1685 aa24.18■■□□□ 1.46
CHMP1A-208ENST00000550102 TMF1P82094 1093 aa24.18■■□□□ 1.46
CHMP1A-208ENST00000550102 TERF2IPQ9NYB0 399 aa24.18■■□□□ 1.46
CHMP1A-208ENST00000550102 GCP02774 474 aa24.17■■□□□ 1.46
CHMP1A-208ENST00000550102 CHRNA2Q15822 529 aa24.17■■□□□ 1.46
CHMP1A-208ENST00000550102 SLC12A5Q9H2X9 1139 aa24.16■■□□□ 1.46
CHMP1A-208ENST00000550102 NFAT5O94916 1531 aa24.15■■□□□ 1.46
CHMP1A-208ENST00000550102 CAMTA1Q9Y6Y1 1673 aa24.15■■□□□ 1.46
CHMP1A-208ENST00000550102 COL18A1P39060 1754 aa24.14■■□□□ 1.46
CHMP1A-208ENST00000550102 THSD7AQ9UPZ6 1657 aa24.14■■□□□ 1.45
CHMP1A-208ENST00000550102 LTN1O94822 1766 aa24.14■■□□□ 1.45
CHMP1A-208ENST00000550102 EP400Q96L91 3159 aa24.13■■□□□ 1.45
CHMP1A-208ENST00000550102 RGPD5Q99666 1765 aa24.12■■□□□ 1.45
CHMP1A-208ENST00000550102 CDCA8Q53HL2 280 aa24.12■■□□□ 1.45
CHMP1A-208ENST00000550102 ABCC6O95255 1503 aa24.11■■□□□ 1.45
CHMP1A-208ENST00000550102 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.11■■□□□ 1.45
CHMP1A-208ENST00000550102 USP31Q70CQ4 1352 aa24.11■■□□□ 1.45
CHMP1A-208ENST00000550102 ANKRD36BQ8N2N9 1353 aa24.11■■□□□ 1.45
CHMP1A-208ENST00000550102 SPATA31A5Q5VU36 1347 aa24.1■■□□□ 1.45
CHMP1A-208ENST00000550102 SPATA31A7Q8IWB4 1347 aa24.1■■□□□ 1.45
CHMP1A-208ENST00000550102 KIF20BQ96Q89 1820 aa24.1■■□□□ 1.45
CHMP1A-208ENST00000550102 KCNH5Q8NCM2 988 aa24.1■■□□□ 1.45
CHMP1A-208ENST00000550102 UPF1Q92900 1129 aaKnown RBP eCLIP24.1■■□□□ 1.451e-17■■■■■ 32.5
CHMP1A-208ENST00000550102 COL5A2P05997 1499 aaPredicted RBP24.1■■□□□ 1.45
CHMP1A-208ENST00000550102 AATKQ6ZMQ8 1374 aa24.09■■□□□ 1.45
CHMP1A-208ENST00000550102 STRN4Q9NRL3 753 aa24.09■■□□□ 1.45
CHMP1A-208ENST00000550102 WNK3Q9BYP7 1800 aa24.07■■□□□ 1.44
CHMP1A-208ENST00000550102 NME9Q86XW9 330 aa24.07■■□□□ 1.44
CHMP1A-208ENST00000550102 SEPT12Q8IYM1 358 aa24.07■■□□□ 1.44
CHMP1A-208ENST00000550102 OVOS2A0A0J9YW53 1432 aa24.07■■□□□ 1.44
CHMP1A-208ENST00000550102 OVOS2Q6IE36 1432 aa24.07■■□□□ 1.44
CHMP1A-208ENST00000550102 A0A0G2JS52 829 aa24.06■■□□□ 1.44
CHMP1A-208ENST00000550102 ZBTB7CA1YPR0 619 aa24.06■■□□□ 1.44
CHMP1A-208ENST00000550102 ONECUT3O60422 494 aaPredicted RBP24.06■■□□□ 1.44
CHMP1A-208ENST00000550102 MYT1Q01538 1121 aa24.06■■□□□ 1.44
CHMP1A-208ENST00000550102 FAM98CQ17RN3 349 aaKnown RBP24.06■■□□□ 1.44
CHMP1A-208ENST00000550102 EVA1CP58658 441 aa24.05■■□□□ 1.44
CHMP1A-208ENST00000550102 SPATA31A1Q5TZJ5 1347 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms