RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 NWD2Q9ULI1 1742 aa23.46■■□□□ 1.35
VPS29-207ENST00000549970 ACEP12821 1306 aa23.45■■□□□ 1.34
VPS29-207ENST00000549970 FAM83GA6ND36 823 aa23.45■■□□□ 1.34
VPS29-207ENST00000549970 SRPK2P78362 688 aaKnown RBP23.45■■□□□ 1.34
VPS29-207ENST00000549970 POLR3AO14802 1390 aaPredicted RBP23.43■■□□□ 1.34
VPS29-207ENST00000549970 ROCK2O75116 1388 aaKnown RBP23.43■■□□□ 1.34
VPS29-207ENST00000549970 EP400Q96L91 3159 aa23.43■■□□□ 1.34
VPS29-207ENST00000549970 CCDC9Q9Y3X0 531 aaKnown RBP23.43■■□□□ 1.34
VPS29-207ENST00000549970 CRYBG1Q9Y4K1 1723 aa23.42■■□□□ 1.34
VPS29-207ENST00000549970 PLEKHG3A1L390 1219 aa23.42■■□□□ 1.34
VPS29-207ENST00000549970 VPS72Q15906 364 aa23.42■■□□□ 1.34
VPS29-207ENST00000549970 NBPF8Q3BBV2 869 aa23.42■■□□□ 1.34
VPS29-207ENST00000549970 CABP2Q9NPB3 220 aa23.42■■□□□ 1.34
VPS29-207ENST00000549970 PPIP5K1Q6PFW1 1433 aa23.4■■□□□ 1.34
VPS29-207ENST00000549970 NUTM2GQ5VZR2 741 aa23.39■■□□□ 1.33
VPS29-207ENST00000549970 BTG4Q9NY30 223 aa23.39■■□□□ 1.33
VPS29-207ENST00000549970 COL14A1Q05707 1796 aaKnown RBP23.39■■□□□ 1.33
VPS29-207ENST00000549970 NRAPQ86VF7 1730 aa23.39■■□□□ 1.33
VPS29-207ENST00000549970 TRIM26Q12899 539 aaPredicted RBP23.37■■□□□ 1.33
VPS29-207ENST00000549970 PRDM11Q9NQV5 511 aa23.37■■□□□ 1.33
VPS29-207ENST00000549970 PHRF1Q9P1Y6 1649 aaKnown RBP23.36■■□□□ 1.33
VPS29-207ENST00000549970 SEPT12Q8IYM1 358 aa23.35■■□□□ 1.33
VPS29-207ENST00000549970 EVC2Q86UK5 1308 aa23.34■■□□□ 1.33
VPS29-207ENST00000549970 BRWD3Q6RI45 1802 aa23.34■■□□□ 1.33
VPS29-207ENST00000549970 ABTB2Q8N961 1025 aa23.34■■□□□ 1.33
VPS29-207ENST00000549970 KIAA0232Q92628 1395 aa23.33■■□□□ 1.33
VPS29-207ENST00000549970 TONSLQ96HA7 1378 aa23.33■■□□□ 1.33
VPS29-207ENST00000549970 CABP1Q9NZU7 370 aa23.33■■□□□ 1.33
VPS29-207ENST00000549970 A0A0G2JS52 829 aa23.31■■□□□ 1.32
VPS29-207ENST00000549970 ZC3H6P61129 1189 aaKnown RBP23.31■■□□□ 1.32
VPS29-207ENST00000549970 MYT1Q01538 1121 aa23.31■■□□□ 1.32
VPS29-207ENST00000549970 CHRNA2Q15822 529 aa23.31■■□□□ 1.32
VPS29-207ENST00000549970 ONECUT3O60422 494 aaPredicted RBP23.29■■□□□ 1.32
VPS29-207ENST00000549970 FAM98CQ17RN3 349 aaKnown RBP23.29■■□□□ 1.32
VPS29-207ENST00000549970 NRKQ7Z2Y5 1582 aa23.28■■□□□ 1.32
VPS29-207ENST00000549970 USP6P35125 1406 aa23.27■■□□□ 1.32
VPS29-207ENST00000549970 CARD11Q9BXL7 1154 aa23.27■■□□□ 1.32
VPS29-207ENST00000549970 KRT27Q7Z3Y8 459 aa23.26■■□□□ 1.31
VPS29-207ENST00000549970 NLRP13Q86W25 1043 aa23.26■■□□□ 1.31
VPS29-207ENST00000549970 STRN4Q9NRL3 753 aa23.26■■□□□ 1.31
VPS29-207ENST00000549970 USP19O94966 1318 aa23.26■■□□□ 1.31
VPS29-207ENST00000549970 SPATA31A5Q5VU36 1347 aa23.26■■□□□ 1.31
VPS29-207ENST00000549970 SPATA31A7Q8IWB4 1347 aa23.26■■□□□ 1.31
VPS29-207ENST00000549970 BRD4O60885 1362 aaPredicted RBP23.26■■□□□ 1.31
VPS29-207ENST00000549970 CCDC125Q86Z20 511 aa23.25■■□□□ 1.31
VPS29-207ENST00000549970 GCP02774 474 aa23.22■■□□□ 1.31
VPS29-207ENST00000549970 BLMP54132 1417 aaPredicted RBP23.22■■□□□ 1.31
VPS29-207ENST00000549970 NLRP6P59044 892 aa23.21■■□□□ 1.31
VPS29-207ENST00000549970 CPDO75976 1380 aa23.21■■□□□ 1.31
VPS29-207ENST00000549970 SBNO2Q9Y2G9 1366 aa23.2■■□□□ 1.3
VPS29-207ENST00000549970 SPATA31A1Q5TZJ5 1347 aa23.2■■□□□ 1.3
VPS29-207ENST00000549970 EVA1CP58658 441 aa23.2■■□□□ 1.3
VPS29-207ENST00000549970 SSH2Q76I76 1423 aa23.19■■□□□ 1.3
VPS29-207ENST00000549970 AKAP12Q02952 1782 aa23.19■■□□□ 1.3
VPS29-207ENST00000549970 PIK3C2AO00443 1686 aa23.19■■□□□ 1.3
VPS29-207ENST00000549970 CAMTA1Q9Y6Y1 1673 aa23.19■■□□□ 1.3
VPS29-207ENST00000549970 USP35Q9P2H5 1018 aa23.18■■□□□ 1.3
VPS29-207ENST00000549970 LMO7Q8WWI1 1683 aa23.18■■□□□ 1.3
VPS29-207ENST00000549970 THSD7AQ9UPZ6 1657 aa23.18■■□□□ 1.3
VPS29-207ENST00000549970 ZBTB7CA1YPR0 619 aa23.17■■□□□ 1.3
VPS29-207ENST00000549970 SF3B2Q13435 895 aaKnown RBP23.17■■□□□ 1.3
VPS29-207ENST00000549970 ZNF692Q9BU19 519 aaPredicted RBP23.17■■□□□ 1.3
VPS29-207ENST00000549970 TTC21BQ7Z4L5 1316 aa23.16■■□□□ 1.3
VPS29-207ENST00000549970 SLIT3O75094 1523 aa23.16■■□□□ 1.3
VPS29-207ENST00000549970 FAM182BQ5T319 152 aa23.15■■□□□ 1.3
VPS29-207ENST00000549970 LARP1Q6PKG0 1096 aaKnown RBP23.15■■□□□ 1.3
VPS29-207ENST00000549970 DEFB132Q7Z7B7 95 aa23.15■■□□□ 1.3
VPS29-207ENST00000549970 CPSF1Q10570 1443 aaKnown RBP23.14■■□□□ 1.29
VPS29-207ENST00000549970 KTN1Q86UP2 1357 aaKnown RBP23.14■■□□□ 1.29
VPS29-207ENST00000549970 ZRANB1Q9UGI0 708 aa23.12■■□□□ 1.29
VPS29-207ENST00000549970 COL5A2P05997 1499 aaPredicted RBP23.11■■□□□ 1.29
VPS29-207ENST00000549970 TTC21AQ8NDW8 1320 aa23.11■■□□□ 1.29
VPS29-207ENST00000549970 TMC1Q8TDI8 760 aa23.11■■□□□ 1.29
VPS29-207ENST00000549970 SOX12O15370 315 aa23.1■■□□□ 1.29
VPS29-207ENST00000549970 MON2Q7Z3U7 1717 aa23.1■■□□□ 1.29
VPS29-207ENST00000549970 BARGINQ6ZT62 677 aa23.09■■□□□ 1.29
VPS29-207ENST00000549970 TCP11L2Q8N4U5 519 aa23.09■■□□□ 1.29
VPS29-207ENST00000549970 AATKQ6ZMQ8 1374 aa23.09■■□□□ 1.29
VPS29-207ENST00000549970 SRCAPQ6ZRS2 3230 aa23.09■■□□□ 1.29
VPS29-207ENST00000549970 CD163L1Q9NR16 1453 aa23.07■■□□□ 1.28
VPS29-207ENST00000549970 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.07■■□□□ 1.28
VPS29-207ENST00000549970 ST20-MTHFSA0A0A6YYL1 179 aa23.06■■□□□ 1.28
VPS29-207ENST00000549970 BAG6P46379 1132 aa23.06■■□□□ 1.28
VPS29-207ENST00000549970 KCNH5Q8NCM2 988 aa23.06■■□□□ 1.28
VPS29-207ENST00000549970 SLC12A5Q9H2X9 1139 aa23.06■■□□□ 1.28
VPS29-207ENST00000549970 COL18A1P39060 1754 aa23.05■■□□□ 1.28
VPS29-207ENST00000549970 HDGFL2Q7Z4V5 671 aaPredicted RBP23.05■■□□□ 1.28
VPS29-207ENST00000549970 CRB1P82279 1406 aa23.05■■□□□ 1.28
VPS29-207ENST00000549970 RGPD1P0DJD0 1748 aa23.05■■□□□ 1.28
VPS29-207ENST00000549970 PDE3BQ13370 1112 aa23.04■■□□□ 1.28
VPS29-207ENST00000549970 ARHGEF25Q86VW2 580 aa23.04■■□□□ 1.28
VPS29-207ENST00000549970 TESK2Q96S53 571 aa23.04■■□□□ 1.28
VPS29-207ENST00000549970 THRAP3Q9Y2W1 955 aaKnown RBP23.04■■□□□ 1.28
VPS29-207ENST00000549970 AXIN2Q9Y2T1 843 aa23.03■■□□□ 1.28
VPS29-207ENST00000549970 FAM196AQ6ZSG2 479 aa23.02■■□□□ 1.28
VPS29-207ENST00000549970 TOM1L2Q6ZVM7 507 aa23.02■■□□□ 1.28
VPS29-207ENST00000549970 NME9Q86XW9 330 aa23.02■■□□□ 1.28
VPS29-207ENST00000549970 PCGF6Q9BYE7 350 aa23.02■■□□□ 1.28
VPS29-207ENST00000549970 NFAT5O94916 1531 aa23.02■■□□□ 1.28
VPS29-207ENST00000549970 PUS7Q96PZ0 661 aaKnown RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms