RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 TRPM1Q7Z4N2 1603 aa25.23■■□□□ 1.63
CHMP1A-205ENST00000548650 POLR3AO14802 1390 aaPredicted RBP25.22■■□□□ 1.63
CHMP1A-205ENST00000548650 FAM83GA6ND36 823 aa25.22■■□□□ 1.63
CHMP1A-205ENST00000548650 CDK19Q9BWU1 502 aa25.22■■□□□ 1.63
CHMP1A-205ENST00000548650 NRKQ7Z2Y5 1582 aa25.18■■□□□ 1.62
CHMP1A-205ENST00000548650 PAK3O75914 559 aaPredicted RBP25.17■■□□□ 1.62
CHMP1A-205ENST00000548650 CENPJQ9HC77 1338 aaPredicted RBP25.16■■□□□ 1.62
CHMP1A-205ENST00000548650 SEPT12Q8IYM1 358 aa25.16■■□□□ 1.62
CHMP1A-205ENST00000548650 BLMP54132 1417 aaPredicted RBP25.15■■□□□ 1.62
CHMP1A-205ENST00000548650 ONECUT3O60422 494 aaPredicted RBP25.15■■□□□ 1.62
CHMP1A-205ENST00000548650 L3MBTL2Q969R5 705 aa25.15■■□□□ 1.62
CHMP1A-205ENST00000548650 BTG4Q9NY30 223 aa25.15■■□□□ 1.62
CHMP1A-205ENST00000548650 CCDC9Q9Y3X0 531 aaKnown RBP25.15■■□□□ 1.62
CHMP1A-205ENST00000548650 CCDC61Q9Y6R9 512 aa25.15■■□□□ 1.62
CHMP1A-205ENST00000548650 THSD7AQ9UPZ6 1657 aa25.15■■□□□ 1.62
CHMP1A-205ENST00000548650 ACEP12821 1306 aa25.14■■□□□ 1.62
CHMP1A-205ENST00000548650 PLEKHG3A1L390 1219 aa25.13■■□□□ 1.61
CHMP1A-205ENST00000548650 CCDC125Q86Z20 511 aa25.13■■□□□ 1.61
CHMP1A-205ENST00000548650 PPIP5K1Q6PFW1 1433 aa25.12■■□□□ 1.61
CHMP1A-205ENST00000548650 KIAA0232Q92628 1395 aa25.11■■□□□ 1.61
CHMP1A-205ENST00000548650 PRDM11Q9NQV5 511 aa25.11■■□□□ 1.61
CHMP1A-205ENST00000548650 NBPF8Q3BBV2 869 aa25.1■■□□□ 1.61
CHMP1A-205ENST00000548650 SIN3AQ96ST3 1273 aa25.1■■□□□ 1.61
CHMP1A-205ENST00000548650 LMO7Q8WWI1 1683 aa25.1■■□□□ 1.61
CHMP1A-205ENST00000548650 SRPK2P78362 688 aaKnown RBP25.08■■□□□ 1.61
CHMP1A-205ENST00000548650 SPATA31A5Q5VU36 1347 aa25.08■■□□□ 1.6
CHMP1A-205ENST00000548650 SPATA31A7Q8IWB4 1347 aa25.08■■□□□ 1.6
CHMP1A-205ENST00000548650 FAM98CQ17RN3 349 aaKnown RBP25.07■■□□□ 1.6
CHMP1A-205ENST00000548650 KRT27Q7Z3Y8 459 aa25.07■■□□□ 1.6
CHMP1A-205ENST00000548650 NUTM2GQ5VZR2 741 aa25.06■■□□□ 1.6
CHMP1A-205ENST00000548650 USP19O94966 1318 aa25.06■■□□□ 1.6
CHMP1A-205ENST00000548650 CABP2Q9NPB3 220 aa25.05■■□□□ 1.6
CHMP1A-205ENST00000548650 RGPD1P0DJD0 1748 aa25.04■■□□□ 1.6
CHMP1A-205ENST00000548650 ROCK2O75116 1388 aaKnown RBP25.04■■□□□ 1.6
CHMP1A-205ENST00000548650 A0A0G2JS52 829 aa25.03■■□□□ 1.6
CHMP1A-205ENST00000548650 MYT1Q01538 1121 aa25.03■■□□□ 1.6
CHMP1A-205ENST00000548650 CHRNA2Q15822 529 aa25.03■■□□□ 1.6
CHMP1A-205ENST00000548650 PIK3C2AO00443 1686 aa25.03■■□□□ 1.6
CHMP1A-205ENST00000548650 USP6P35125 1406 aa25.03■■□□□ 1.6
CHMP1A-205ENST00000548650 AKAP12Q02952 1782 aa25.02■■□□□ 1.6
CHMP1A-205ENST00000548650 BRD4O60885 1362 aaPredicted RBP25.02■■□□□ 1.6
CHMP1A-205ENST00000548650 CPDO75976 1380 aa25.02■■□□□ 1.6
CHMP1A-205ENST00000548650 CAMTA1Q9Y6Y1 1673 aa25.01■■□□□ 1.59
CHMP1A-205ENST00000548650 TNS1Q9HBL0 1735 aaKnown RBP25.01■■□□□ 1.59
CHMP1A-205ENST00000548650 NEUROD1Q13562 356 aa25.01■■□□□ 1.59
CHMP1A-205ENST00000548650 SLIT3O75094 1523 aa25.01■■□□□ 1.59
CHMP1A-205ENST00000548650 ZC3H6P61129 1189 aaKnown RBP25■■□□□ 1.59
CHMP1A-205ENST00000548650 ABTB2Q8N961 1025 aa25■■□□□ 1.59
CHMP1A-205ENST00000548650 ZRANB1Q9UGI0 708 aa25■■□□□ 1.59
CHMP1A-205ENST00000548650 SPATA31A1Q5TZJ5 1347 aa25■■□□□ 1.59
CHMP1A-205ENST00000548650 SSH2Q76I76 1423 aa25■■□□□ 1.59
CHMP1A-205ENST00000548650 DEFB132Q7Z7B7 95 aa24.99■■□□□ 1.59
CHMP1A-205ENST00000548650 EVC2Q86UK5 1308 aa24.96■■□□□ 1.59
CHMP1A-205ENST00000548650 STRN4Q9NRL3 753 aa24.96■■□□□ 1.59
CHMP1A-205ENST00000548650 CABP1Q9NZU7 370 aa24.96■■□□□ 1.59
CHMP1A-205ENST00000548650 SRCAPQ6ZRS2 3230 aa24.95■■□□□ 1.59
CHMP1A-205ENST00000548650 SF3B2Q13435 895 aaKnown RBP24.95■■□□□ 1.58
CHMP1A-205ENST00000548650 MON2Q7Z3U7 1717 aa24.94■■□□□ 1.58
CHMP1A-205ENST00000548650 COL5A2P05997 1499 aaPredicted RBP24.94■■□□□ 1.58
CHMP1A-205ENST00000548650 NLRP13Q86W25 1043 aa24.93■■□□□ 1.58
CHMP1A-205ENST00000548650 COL18A1P39060 1754 aa24.92■■□□□ 1.58
CHMP1A-205ENST00000548650 PARP4Q9UKK3 1724 aaKnown RBP24.92■■□□□ 1.58
CHMP1A-205ENST00000548650 SBNO2Q9Y2G9 1366 aa24.92■■□□□ 1.58
CHMP1A-205ENST00000548650 GCP02774 474 aa24.91■■□□□ 1.58
CHMP1A-205ENST00000548650 FAM182BQ5T319 152 aa24.91■■□□□ 1.58
CHMP1A-205ENST00000548650 DISP2A7MBM2 1401 aa24.9■■□□□ 1.58
CHMP1A-205ENST00000548650 WNK3Q9BYP7 1800 aa24.89■■□□□ 1.58
CHMP1A-205ENST00000548650 LARP1Q6PKG0 1096 aaKnown RBP24.88■■□□□ 1.57
CHMP1A-205ENST00000548650 CPSF1Q10570 1443 aaKnown RBP24.87■■□□□ 1.57
CHMP1A-205ENST00000548650 BARGINQ6ZT62 677 aa24.87■■□□□ 1.57
CHMP1A-205ENST00000548650 USP54Q70EL1 1684 aa24.86■■□□□ 1.57
CHMP1A-205ENST00000548650 BAG6P46379 1132 aa24.86■■□□□ 1.57
CHMP1A-205ENST00000548650 USP35Q9P2H5 1018 aa24.86■■□□□ 1.57
CHMP1A-205ENST00000548650 AATKQ6ZMQ8 1374 aa24.85■■□□□ 1.57
CHMP1A-205ENST00000548650 EVA1CP58658 441 aa24.85■■□□□ 1.57
CHMP1A-205ENST00000548650 NLRP6P59044 892 aa24.85■■□□□ 1.57
CHMP1A-205ENST00000548650 LRRC37A3O60309 1634 aa24.85■■□□□ 1.57
CHMP1A-205ENST00000548650 LRP5O75197 1615 aa24.85■■□□□ 1.57
CHMP1A-205ENST00000548650 TONSLQ96HA7 1378 aa24.84■■□□□ 1.57
CHMP1A-205ENST00000548650 NFAT5O94916 1531 aa24.84■■□□□ 1.57
CHMP1A-205ENST00000548650 CRB1P82279 1406 aa24.84■■□□□ 1.57
CHMP1A-205ENST00000548650 RGPD5Q99666 1765 aa24.83■■□□□ 1.57
CHMP1A-205ENST00000548650 TTC21BQ7Z4L5 1316 aa24.83■■□□□ 1.56
CHMP1A-205ENST00000548650 TCP11L2Q8N4U5 519 aa24.82■■□□□ 1.56
CHMP1A-205ENST00000548650 CARD11Q9BXL7 1154 aa24.81■■□□□ 1.56
CHMP1A-205ENST00000548650 CD163L1Q9NR16 1453 aa24.81■■□□□ 1.56
CHMP1A-205ENST00000548650 RREB1Q92766 1687 aa24.81■■□□□ 1.56
CHMP1A-205ENST00000548650 PEAK1Q9H792 1746 aa24.81■■□□□ 1.56
CHMP1A-205ENST00000548650 ZNF692Q9BU19 519 aaPredicted RBP24.8■■□□□ 1.56
CHMP1A-205ENST00000548650 TTC21AQ8NDW8 1320 aa24.8■■□□□ 1.56
CHMP1A-205ENST00000548650 EN1Q05925 392 aaPredicted RBP24.79■■□□□ 1.56
CHMP1A-205ENST00000548650 FAM196AQ6ZSG2 479 aa24.79■■□□□ 1.56
CHMP1A-205ENST00000548650 THRAP3Q9Y2W1 955 aaKnown RBP24.79■■□□□ 1.56
CHMP1A-205ENST00000548650 KTN1Q86UP2 1357 aaKnown RBP24.79■■□□□ 1.56
CHMP1A-205ENST00000548650 ABCC6O95255 1503 aa24.78■■□□□ 1.56
CHMP1A-205ENST00000548650 ZBTB7CA1YPR0 619 aa24.78■■□□□ 1.56
CHMP1A-205ENST00000548650 NUP188Q5SRE5 1749 aa24.76■■□□□ 1.55
CHMP1A-205ENST00000548650 TRIM37O94972 964 aa24.75■■□□□ 1.55
CHMP1A-205ENST00000548650 PDE3BQ13370 1112 aa24.75■■□□□ 1.55
CHMP1A-205ENST00000548650 LTN1O94822 1766 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms