RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	EP400	Q96L91	3159 aa		33.48	■■■□□ 2.95
SMARCD1-204	ENST00000547637	ALS2	Q96Q42	1657 aa		33.48	■■■□□ 2.95
SMARCD1-204	ENST00000547637	PRDM11	Q9NQV5	511 aa		33.47	■■■□□ 2.95
SMARCD1-204	ENST00000547637	ITSN1	Q15811	1721 aa		33.46	■■■□□ 2.95
SMARCD1-204	ENST00000547637	FAM98C	Q17RN3	349 aa	Known RBP	33.46	■■■□□ 2.95
SMARCD1-204	ENST00000547637	CDK19	Q9BWU1	502 aa		33.46	■■■□□ 2.95
SMARCD1-204	ENST00000547637	COL14A1	Q05707	1796 aa	Known RBP	33.46	■■■□□ 2.95
SMARCD1-204	ENST00000547637	DEFB132	Q7Z7B7	95 aa		33.44	■■■□□ 2.94
SMARCD1-204	ENST00000547637	ARHGEF28	Q8N1W1	1705 aa	Known RBP	33.44	■■■□□ 2.94
SMARCD1-204	ENST00000547637	CCDC61	Q9Y6R9	512 aa		33.42	■■■□□ 2.94
SMARCD1-204	ENST00000547637	BAG6	P46379	1132 aa		33.41	■■■□□ 2.94
SMARCD1-204	ENST00000547637	ATP7B	P35670	1465 aa		33.39	■■■□□ 2.94
SMARCD1-204	ENST00000547637	SPATA31A5	Q5VU36	1347 aa		33.38	■■■□□ 2.93
SMARCD1-204	ENST00000547637	SPATA31A7	Q8IWB4	1347 aa		33.38	■■■□□ 2.93
SMARCD1-204	ENST00000547637	NRAP	Q86VF7	1730 aa		33.38	■■■□□ 2.93
SMARCD1-204	ENST00000547637	NBPF8	Q3BBV2	869 aa		33.36	■■■□□ 2.93
SMARCD1-204	ENST00000547637	KIAA1210	Q9ULL0	1709 aa		33.36	■■■□□ 2.93
SMARCD1-204	ENST00000547637	ACE	P12821	1306 aa		33.34	■■■□□ 2.93
SMARCD1-204	ENST00000547637	PLEKHG3	A1L390	1219 aa		33.34	■■■□□ 2.93
SMARCD1-204	ENST00000547637	POLR3A	O14802	1390 aa	Predicted RBP	33.32	■■■□□ 2.92
SMARCD1-204	ENST00000547637	KIAA0232	Q92628	1395 aa		33.32	■■■□□ 2.92
SMARCD1-204	ENST00000547637	EVA1C	P58658	441 aa		33.31	■■■□□ 2.92
SMARCD1-204	ENST00000547637	ZC3H6	P61129	1189 aa	Known RBP	33.31	■■■□□ 2.92
SMARCD1-204	ENST00000547637	SRPK2	P78362	688 aa	Known RBP	33.31	■■■□□ 2.92
SMARCD1-204	ENST00000547637	ABTB2	Q8N961	1025 aa		33.31	■■■□□ 2.92
SMARCD1-204	ENST00000547637	NUTM2G	Q5VZR2	741 aa		33.3	■■■□□ 2.92
SMARCD1-204	ENST00000547637	STRN4	Q9NRL3	753 aa		33.3	■■■□□ 2.92
SMARCD1-204	ENST00000547637	NBPF1	Q3BBV0	1214 aa		33.29	■■■□□ 2.92
SMARCD1-204	ENST00000547637	CHRNA2	Q15822	529 aa		33.28	■■■□□ 2.92
SMARCD1-204	ENST00000547637	CRYBG1	Q9Y4K1	1723 aa		33.28	■■■□□ 2.92
SMARCD1-204	ENST00000547637	SPATA31A1	Q5TZJ5	1347 aa		33.27	■■■□□ 2.92
SMARCD1-204	ENST00000547637	CENPJ	Q9HC77	1338 aa	Predicted RBP	33.27	■■■□□ 2.92
SMARCD1-204	ENST00000547637	NLRP13	Q86W25	1043 aa		33.25	■■■□□ 2.91
SMARCD1-204	ENST00000547637	FAM196A	Q6ZSG2	479 aa		33.22	■■■□□ 2.91
SMARCD1-204	ENST00000547637	TOPAZ1	Q8N9V7	1692 aa		33.21	■■■□□ 2.91
SMARCD1-204	ENST00000547637	PHRF1	Q9P1Y6	1649 aa	Known RBP	33.2	■■■□□ 2.91
SMARCD1-204	ENST00000547637	FAM182B	Q5T319	152 aa		33.2	■■■□□ 2.91
SMARCD1-204	ENST00000547637	USP35	Q9P2H5	1018 aa		33.2	■■■□□ 2.91
SMARCD1-204	ENST00000547637	BRD4	O60885	1362 aa	Predicted RBP	33.2	■■■□□ 2.9
SMARCD1-204	ENST00000547637	EN1	Q05925	392 aa	Predicted RBP	33.19	■■■□□ 2.9
SMARCD1-204	ENST00000547637	SRCAP	Q6ZRS2	3230 aa		33.19	■■■□□ 2.9
SMARCD1-204	ENST00000547637	RGPD1	P0DJD0	1748 aa		33.19	■■■□□ 2.9
SMARCD1-204	ENST00000547637	PPIP5K1	Q6PFW1	1433 aa		33.19	■■■□□ 2.9
SMARCD1-204	ENST00000547637	CABP2	Q9NPB3	220 aa		33.18	■■■□□ 2.9
SMARCD1-204	ENST00000547637	PDE3B	Q13370	1112 aa		33.17	■■■□□ 2.9
SMARCD1-204	ENST00000547637	THSD7A	Q9UPZ6	1657 aa		33.17	■■■□□ 2.9
SMARCD1-204	ENST00000547637	BARGIN	Q6ZT62	677 aa		33.16	■■■□□ 2.9
SMARCD1-204	ENST00000547637	CPD	O75976	1380 aa		33.14	■■■□□ 2.9
SMARCD1-204	ENST00000547637	GC	P02774	474 aa		33.14	■■■□□ 2.9
SMARCD1-204	ENST00000547637	SSH2	Q76I76	1423 aa		33.12	■■■□□ 2.89
SMARCD1-204	ENST00000547637	USP19	O94966	1318 aa		33.12	■■■□□ 2.89
SMARCD1-204	ENST00000547637	PSD	A5PKW4	1024 aa	Predicted RBP	33.12	■■■□□ 2.89
SMARCD1-204	ENST00000547637	TCP11L2	Q8N4U5	519 aa		33.12	■■■□□ 2.89
SMARCD1-204	ENST00000547637	L3MBTL2	Q969R5	705 aa		33.11	■■■□□ 2.89
SMARCD1-204	ENST00000547637	THRAP3	Q9Y2W1	955 aa	Known RBP	33.11	■■■□□ 2.89
SMARCD1-204	ENST00000547637	EVC2	Q86UK5	1308 aa		33.1	■■■□□ 2.89
SMARCD1-204	ENST00000547637	CABP1	Q9NZU7	370 aa		33.1	■■■□□ 2.89
SMARCD1-204	ENST00000547637	DISP2	A7MBM2	1401 aa		33.1	■■■□□ 2.89
SMARCD1-204	ENST00000547637	TRIM37	O94972	964 aa		33.09	■■■□□ 2.89
SMARCD1-204	ENST00000547637	NLRP6	P59044	892 aa		33.09	■■■□□ 2.89
SMARCD1-204	ENST00000547637	LARP1	Q6PKG0	1096 aa	Known RBP	33.09	■■■□□ 2.89
SMARCD1-204	ENST00000547637	NRK	Q7Z2Y5	1582 aa		33.07	■■■□□ 2.88
SMARCD1-204	ENST00000547637	APBA3	O96018	575 aa		33.06	■■■□□ 2.88
SMARCD1-204	ENST00000547637	QRICH2	Q9H0J4	1663 aa		33.06	■■■□□ 2.88
SMARCD1-204	ENST00000547637	CAMTA1	Q9Y6Y1	1673 aa		33.05	■■■□□ 2.88
SMARCD1-204	ENST00000547637	C11orf95	C9JLR9	678 aa	Predicted RBP	33.05	■■■□□ 2.88
SMARCD1-204	ENST00000547637	ZBTB7C	A1YPR0	619 aa		33.04	■■■□□ 2.88
SMARCD1-204	ENST00000547637	EZH2	Q15910	746 aa	Known RBP	33.04	■■■□□ 2.88
SMARCD1-204	ENST00000547637	ZNF692	Q9BU19	519 aa	Predicted RBP	33.03	■■■□□ 2.88
SMARCD1-204	ENST00000547637	LRP5	O75197	1615 aa		33.02	■■■□□ 2.88
SMARCD1-204	ENST00000547637	PARD3	Q8TEW0	1356 aa		33.02	■■■□□ 2.88
SMARCD1-204	ENST00000547637	NEUROD1	Q13562	356 aa		33.02	■■■□□ 2.88
SMARCD1-204	ENST00000547637	USP6	P35125	1406 aa		33.02	■■■□□ 2.88
SMARCD1-204	ENST00000547637	R3HDM1	Q15032	1099 aa	Known RBP	33.01	■■■□□ 2.87
SMARCD1-204	ENST00000547637	CAMKK2	Q96RR4	588 aa		33	■■■□□ 2.87
SMARCD1-204	ENST00000547637	ROCK2	O75116	1388 aa	Known RBP	32.99	■■■□□ 2.87
SMARCD1-204	ENST00000547637	SIN3A	Q96ST3	1273 aa		32.99	■■■□□ 2.87
SMARCD1-204	ENST00000547637	TNS1	Q9HBL0	1735 aa	Known RBP	32.99	■■■□□ 2.87
SMARCD1-204	ENST00000547637	LMO7	Q8WWI1	1683 aa		32.98	■■■□□ 2.87
SMARCD1-204	ENST00000547637	NBPF14	Q5TI25	921 aa		32.96	■■■□□ 2.87
SMARCD1-204	ENST00000547637	AATK	Q6ZMQ8	1374 aa		32.96	■■■□□ 2.87
SMARCD1-204	ENST00000547637	CRB1	P82279	1406 aa		32.95	■■■□□ 2.87
SMARCD1-204	ENST00000547637	COL5A2	P05997	1499 aa	Predicted RBP	32.95	■■■□□ 2.87
SMARCD1-204	ENST00000547637	KCNH5	Q8NCM2	988 aa		32.95	■■■□□ 2.87
SMARCD1-204	ENST00000547637	TOM1L2	Q6ZVM7	507 aa		32.94	■■■□□ 2.86
SMARCD1-204	ENST00000547637	TRPM1	Q7Z4N2	1603 aa		32.91	■■■□□ 2.86
SMARCD1-204	ENST00000547637	TTC21A	Q8NDW8	1320 aa		32.89	■■■□□ 2.86
SMARCD1-204	ENST00000547637	SLIT3	O75094	1523 aa		32.88	■■■□□ 2.85
SMARCD1-204	ENST00000547637	TTC21B	Q7Z4L5	1316 aa		32.88	■■■□□ 2.85
SMARCD1-204	ENST00000547637	DDB1	Q16531	1140 aa		32.88	■■■□□ 2.85
SMARCD1-204	ENST00000547637	CDCA7	Q9BWT1	371 aa	Predicted RBP	32.87	■■■□□ 2.85
SMARCD1-204	ENST00000547637	PARP4	Q9UKK3	1724 aa	Known RBP	32.85	■■■□□ 2.85
SMARCD1-204	ENST00000547637	CSB-PGBD3	P0DP91	1061 aa		32.84	■■■□□ 2.85
SMARCD1-204	ENST00000547637	OVOS2	A0A0G2JMS6	1433 aa		32.84	■■■□□ 2.85
SMARCD1-204	ENST00000547637	OVOS2	A0A0J9YW53	1432 aa		32.84	■■■□□ 2.85
SMARCD1-204	ENST00000547637	OVOS2	Q6IE36	1432 aa		32.84	■■■□□ 2.85
SMARCD1-204	ENST00000547637	WDR17	Q8IZU2	1322 aa		32.83	■■■□□ 2.85
SMARCD1-204	ENST00000547637	ARHGEF25	Q86VW2	580 aa		32.82	■■■□□ 2.84
SMARCD1-204	ENST00000547637	KTN1	Q86UP2	1357 aa	Known RBP	32.82	■■■□□ 2.84
SMARCD1-204	ENST00000547637	PIK3C2A	O00443	1686 aa		32.81	■■■□□ 2.84

Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms