RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 CCDC9Q9Y3X0 531 aaKnown RBP19.26■□□□□ 0.67
CPSF6-204ENST00000547486 ALS2Q96Q42 1657 aa19.25■□□□□ 0.67
CPSF6-204ENST00000547486 EP400Q96L91 3159 aa19.25■□□□□ 0.67
CPSF6-204ENST00000547486 CENPJQ9HC77 1338 aaPredicted RBP19.25■□□□□ 0.67
CPSF6-204ENST00000547486 POLR3AO14802 1390 aaPredicted RBP19.24■□□□□ 0.67
CPSF6-204ENST00000547486 NUTM2GQ5VZR2 741 aa19.24■□□□□ 0.67
CPSF6-204ENST00000547486 CABP2Q9NPB3 220 aa19.24■□□□□ 0.67
CPSF6-204ENST00000547486 ABCA3Q99758 1704 aa19.24■□□□□ 0.67
CPSF6-204ENST00000547486 SRPK2P78362 688 aaKnown RBP19.22■□□□□ 0.67
CPSF6-204ENST00000547486 CCDC125Q86Z20 511 aa19.21■□□□□ 0.67
CPSF6-204ENST00000547486 PLCH1Q4KWH8 1693 aa19.2■□□□□ 0.66
CPSF6-204ENST00000547486 CHRNA2Q15822 529 aa19.19■□□□□ 0.66
CPSF6-204ENST00000547486 PRDM11Q9NQV5 511 aa19.19■□□□□ 0.66
CPSF6-204ENST00000547486 NWD2Q9ULI1 1742 aa19.19■□□□□ 0.66
CPSF6-204ENST00000547486 KIAA0232Q92628 1395 aa19.19■□□□□ 0.66
CPSF6-204ENST00000547486 ZC3H6P61129 1189 aaKnown RBP19.18■□□□□ 0.66
CPSF6-204ENST00000547486 FAM98CQ17RN3 349 aaKnown RBP19.18■□□□□ 0.66
CPSF6-204ENST00000547486 PPIP5K1Q6PFW1 1433 aa19.17■□□□□ 0.66
CPSF6-204ENST00000547486 KRT27Q7Z3Y8 459 aa19.17■□□□□ 0.66
CPSF6-204ENST00000547486 ABTB2Q8N961 1025 aa19.17■□□□□ 0.66
CPSF6-204ENST00000547486 CABP1Q9NZU7 370 aa19.17■□□□□ 0.66
CPSF6-204ENST00000547486 ITSN1Q15811 1721 aa19.17■□□□□ 0.66
CPSF6-204ENST00000547486 TOPAZ1Q8N9V7 1692 aa19.16■□□□□ 0.66
CPSF6-204ENST00000547486 SPATA31A5Q5VU36 1347 aa19.16■□□□□ 0.66
CPSF6-204ENST00000547486 SPATA31A7Q8IWB4 1347 aa19.16■□□□□ 0.66
CPSF6-204ENST00000547486 CRYBG1Q9Y4K1 1723 aa19.15■□□□□ 0.66
CPSF6-204ENST00000547486 COL14A1Q05707 1796 aaKnown RBP19.15■□□□□ 0.66
CPSF6-204ENST00000547486 NRAPQ86VF7 1730 aa19.14■□□□□ 0.66
CPSF6-204ENST00000547486 ROCK2O75116 1388 aaKnown RBP19.14■□□□□ 0.65
CPSF6-204ENST00000547486 A0A0G2JS52 829 aa19.13■□□□□ 0.65
CPSF6-204ENST00000547486 MYT1Q01538 1121 aa19.13■□□□□ 0.65
CPSF6-204ENST00000547486 DEFB132Q7Z7B7 95 aa19.13■□□□□ 0.65
CPSF6-204ENST00000547486 BLMP54132 1417 aaPredicted RBP19.13■□□□□ 0.65
CPSF6-204ENST00000547486 BRWD3Q6RI45 1802 aa19.13■□□□□ 0.65
CPSF6-204ENST00000547486 STRN4Q9NRL3 753 aa19.12■□□□□ 0.65
CPSF6-204ENST00000547486 USP19O94966 1318 aa19.11■□□□□ 0.65
CPSF6-204ENST00000547486 EVC2Q86UK5 1308 aa19.11■□□□□ 0.65
CPSF6-204ENST00000547486 FAM182BQ5T319 152 aa19.11■□□□□ 0.65
CPSF6-204ENST00000547486 TRPM1Q7Z4N2 1603 aa19.11■□□□□ 0.65
CPSF6-204ENST00000547486 SPATA31A1Q5TZJ5 1347 aa19.1■□□□□ 0.65
CPSF6-204ENST00000547486 GCP02774 474 aa19.1■□□□□ 0.65
CPSF6-204ENST00000547486 NLRP13Q86W25 1043 aa19.1■□□□□ 0.65
CPSF6-204ENST00000547486 QRICH2Q9H0J4 1663 aa19.1■□□□□ 0.65
CPSF6-204ENST00000547486 ZRANB1Q9UGI0 708 aa19.09■□□□□ 0.65
CPSF6-204ENST00000547486 SRCAPQ6ZRS2 3230 aa19.08■□□□□ 0.65
CPSF6-204ENST00000547486 USP6P35125 1406 aa19.08■□□□□ 0.64
CPSF6-204ENST00000547486 PHRF1Q9P1Y6 1649 aaKnown RBP19.07■□□□□ 0.64
CPSF6-204ENST00000547486 EVA1CP58658 441 aa19.07■□□□□ 0.64
CPSF6-204ENST00000547486 NLRP6P59044 892 aa19.07■□□□□ 0.64
CPSF6-204ENST00000547486 SSH2Q76I76 1423 aa19.07■□□□□ 0.64
CPSF6-204ENST00000547486 CPDO75976 1380 aa19.06■□□□□ 0.64
CPSF6-204ENST00000547486 SF3B2Q13435 895 aaKnown RBP19.06■□□□□ 0.64
CPSF6-204ENST00000547486 LARP1Q6PKG0 1096 aaKnown RBP19.06■□□□□ 0.64
CPSF6-204ENST00000547486 USP35Q9P2H5 1018 aa19.06■□□□□ 0.64
CPSF6-204ENST00000547486 BRD4O60885 1362 aaPredicted RBP19.06■□□□□ 0.64
CPSF6-204ENST00000547486 CAMTA1Q9Y6Y1 1673 aa19.05■□□□□ 0.64
CPSF6-204ENST00000547486 NRKQ7Z2Y5 1582 aa19.04■□□□□ 0.64
CPSF6-204ENST00000547486 CARD11Q9BXL7 1154 aa19.04■□□□□ 0.64
CPSF6-204ENST00000547486 ZNF692Q9BU19 519 aaPredicted RBP19.03■□□□□ 0.64
CPSF6-204ENST00000547486 TRIM26Q12899 539 aaPredicted RBP19.02■□□□□ 0.64
CPSF6-204ENST00000547486 BARGINQ6ZT62 677 aa19.02■□□□□ 0.64
CPSF6-204ENST00000547486 TTC21BQ7Z4L5 1316 aa19.01■□□□□ 0.63
CPSF6-204ENST00000547486 ZBTB7CA1YPR0 619 aa19.01■□□□□ 0.63
CPSF6-204ENST00000547486 TONSLQ96HA7 1378 aa19.01■□□□□ 0.63
CPSF6-204ENST00000547486 THSD7AQ9UPZ6 1657 aa19.01■□□□□ 0.63
CPSF6-204ENST00000547486 TCP11L2Q8N4U5 519 aa18.99■□□□□ 0.63
CPSF6-204ENST00000547486 CPSF1Q10570 1443 aaKnown RBP18.99■□□□□ 0.63
CPSF6-204ENST00000547486 LMO7Q8WWI1 1683 aa18.98■□□□□ 0.63
CPSF6-204ENST00000547486 BAG6P46379 1132 aa18.98■□□□□ 0.63
CPSF6-204ENST00000547486 EN1Q05925 392 aaPredicted RBP18.98■□□□□ 0.63
CPSF6-204ENST00000547486 AXIN2Q9Y2T1 843 aa18.98■□□□□ 0.63
CPSF6-204ENST00000547486 AATKQ6ZMQ8 1374 aa18.97■□□□□ 0.63
CPSF6-204ENST00000547486 SBNO2Q9Y2G9 1366 aa18.97■□□□□ 0.63
CPSF6-204ENST00000547486 COL5A2P05997 1499 aaPredicted RBP18.97■□□□□ 0.63
CPSF6-204ENST00000547486 SLIT3O75094 1523 aa18.96■□□□□ 0.63
CPSF6-204ENST00000547486 FAM196AQ6ZSG2 479 aa18.96■□□□□ 0.63
CPSF6-204ENST00000547486 ARHGEF25Q86VW2 580 aa18.96■□□□□ 0.63
CPSF6-204ENST00000547486 KTN1Q86UP2 1357 aaKnown RBP18.95■□□□□ 0.62
CPSF6-204ENST00000547486 SOX12O15370 315 aa18.95■□□□□ 0.62
CPSF6-204ENST00000547486 TRIM37O94972 964 aa18.95■□□□□ 0.62
CPSF6-204ENST00000547486 THRAP3Q9Y2W1 955 aaKnown RBP18.95■□□□□ 0.62
CPSF6-204ENST00000547486 TTC21AQ8NDW8 1320 aa18.95■□□□□ 0.62
CPSF6-204ENST00000547486 PIK3C2AO00443 1686 aa18.95■□□□□ 0.62
CPSF6-204ENST00000547486 PDE3BQ13370 1112 aa18.94■□□□□ 0.62
CPSF6-204ENST00000547486 SLC12A5Q9H2X9 1139 aa18.94■□□□□ 0.62
CPSF6-204ENST00000547486 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.93■□□□□ 0.62
CPSF6-204ENST00000547486 KCNH5Q8NCM2 988 aa18.93■□□□□ 0.62
CPSF6-204ENST00000547486 TMC1Q8TDI8 760 aa18.93■□□□□ 0.62
CPSF6-204ENST00000547486 CRB1P82279 1406 aa18.91■□□□□ 0.62
CPSF6-204ENST00000547486 CD163L1Q9NR16 1453 aa18.91■□□□□ 0.62
CPSF6-204ENST00000547486 PSDA5PKW4 1024 aaPredicted RBP18.91■□□□□ 0.62
CPSF6-204ENST00000547486 EZH2Q15910 746 aaKnown RBP18.91■□□□□ 0.62
CPSF6-204ENST00000547486 TESK2Q96S53 571 aa18.91■□□□□ 0.62
CPSF6-204ENST00000547486 ST20-MTHFSA0A0A6YYL1 179 aa18.9■□□□□ 0.62
CPSF6-204ENST00000547486 TOM1L2Q6ZVM7 507 aa18.9■□□□□ 0.62
CPSF6-204ENST00000547486 NME9Q86XW9 330 aa18.9■□□□□ 0.62
CPSF6-204ENST00000547486 CAMKK2Q96RR4 588 aa18.9■□□□□ 0.62
CPSF6-204ENST00000547486 COL18A1P39060 1754 aa18.89■□□□□ 0.61
CPSF6-204ENST00000547486 AKAP12Q02952 1782 aa18.89■□□□□ 0.61
CPSF6-204ENST00000547486 APBA3O96018 575 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms