RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 VPS9D1Q9Y2B5 631 aa12.29□□□□□ -0.44
VPS29-203ENST00000546588 PIK3C2BO00750 1634 aa12.29□□□□□ -0.44
VPS29-203ENST00000546588 NUP155O75694 1391 aa12.29□□□□□ -0.44
VPS29-203ENST00000546588 PTPRTO14522 1441 aa12.28□□□□□ -0.44
VPS29-203ENST00000546588 SLC4A5Q9BY07 1137 aa12.28□□□□□ -0.44
VPS29-203ENST00000546588 NCKAP5LQ9HCH0 1330 aa12.28□□□□□ -0.44
VPS29-203ENST00000546588 MROH2AA6NES4 1674 aa12.28□□□□□ -0.44
VPS29-203ENST00000546588 IFT172Q9UG01 1749 aa12.28□□□□□ -0.44
VPS29-203ENST00000546588 PPP1R15BQ5SWA1 713 aa12.27□□□□□ -0.45
VPS29-203ENST00000546588 BCL2L12Q9HB09 334 aa12.27□□□□□ -0.45
VPS29-203ENST00000546588 ARHGAP31Q2M1Z3 1444 aa12.27□□□□□ -0.45
VPS29-203ENST00000546588 ZC3H15Q8WU90 426 aaKnown RBP12.26□□□□□ -0.45
VPS29-203ENST00000546588 UPF1Q92900 1129 aaKnown RBP eCLIP12.26□□□□□ -0.45
VPS29-203ENST00000546588 LARP6Q9BRS8 491 aaKnown RBP12.26□□□□□ -0.45
VPS29-203ENST00000546588 ANO8Q9HCE9 1232 aaPredicted RBP12.26□□□□□ -0.45
VPS29-203ENST00000546588 PLA2R1Q13018 1463 aa12.26□□□□□ -0.45
VPS29-203ENST00000546588 KIF1BO60333 1816 aa12.25□□□□□ -0.45
VPS29-203ENST00000546588 FOSBP53539 338 aa12.25□□□□□ -0.45
VPS29-203ENST00000546588 KCTD12Q96CX2 325 aaKnown RBP12.25□□□□□ -0.45
VPS29-203ENST00000546588 PREX1Q8TCU6 1659 aa12.25□□□□□ -0.45
VPS29-203ENST00000546588 RAPGEF3O95398 923 aa12.24□□□□□ -0.45
VPS29-203ENST00000546588 CLTCL1P53675 1640 aa12.24□□□□□ -0.45
VPS29-203ENST00000546588 ZNF454Q8N9F8 522 aa12.24□□□□□ -0.45
VPS29-203ENST00000546588 BHMG1C9JSJ3 638 aaPredicted RBP12.23□□□□□ -0.45
VPS29-203ENST00000546588 KDM5AP29375 1690 aaKnown RBP12.22□□□□□ -0.45
VPS29-203ENST00000546588 TESPA1A2RU30 521 aaPredicted RBP12.22□□□□□ -0.45
VPS29-203ENST00000546588 PDE4AP27815 886 aa12.22□□□□□ -0.45
VPS29-203ENST00000546588 BRPF1P55201 1214 aaPredicted RBP12.22□□□□□ -0.45
VPS29-203ENST00000546588 TRIM52Q96A61 297 aa12.22□□□□□ -0.45
VPS29-203ENST00000546588 KANK1Q14678 1352 aa12.21□□□□□ -0.45
VPS29-203ENST00000546588 NEUROD2Q15784 382 aa12.21□□□□□ -0.45
VPS29-203ENST00000546588 CLTCQ00610 1675 aaKnown RBP12.21□□□□□ -0.45
VPS29-203ENST00000546588 POLR1AO95602 1720 aaPredicted RBP12.2□□□□□ -0.46
VPS29-203ENST00000546588 LAMC1P11047 1609 aa12.2□□□□□ -0.46
VPS29-203ENST00000546588 C14orf37Q86TY3 774 aa12.2□□□□□ -0.46
VPS29-203ENST00000546588 SLC24A3Q9HC58 644 aa12.2□□□□□ -0.46
VPS29-203ENST00000546588 KIAA1210Q9ULL0 1709 aa12.2□□□□□ -0.46
VPS29-203ENST00000546588 CNTLNQ9NXG0 1405 aa12.2□□□□□ -0.46
VPS29-203ENST00000546588 SYNMO15061 1565 aa12.19□□□□□ -0.46
VPS29-203ENST00000546588 ADGRB3O60242 1522 aa12.19□□□□□ -0.46
VPS29-203ENST00000546588 NOS1P29475 1434 aa12.19□□□□□ -0.46
VPS29-203ENST00000546588 NPATQ14207 1427 aa12.19□□□□□ -0.46
VPS29-203ENST00000546588 UHRF1BP1Q6BDS2 1440 aa12.19□□□□□ -0.46
VPS29-203ENST00000546588 SPATA31D1Q6ZQQ2 1576 aa12.18□□□□□ -0.46
VPS29-203ENST00000546588 PPLO60437 1756 aa12.18□□□□□ -0.46
VPS29-203ENST00000546588 STAC3Q96MF2 364 aa12.18□□□□□ -0.46
VPS29-203ENST00000546588 ZBED2Q9BTP6 218 aa12.18□□□□□ -0.46
VPS29-203ENST00000546588 SPATA31E1Q6ZUB1 1445 aa12.18□□□□□ -0.46
VPS29-203ENST00000546588 SMYD5Q6GMV2 418 aa12.17□□□□□ -0.46
VPS29-203ENST00000546588 TRPM1Q7Z4N2 1603 aa12.17□□□□□ -0.46
VPS29-203ENST00000546588 FER1L4A9Z1Z3 1794 aa12.17□□□□□ -0.46
VPS29-203ENST00000546588 KIF3BO15066 747 aa12.16□□□□□ -0.46
VPS29-203ENST00000546588 PTPREP23469 700 aa12.16□□□□□ -0.46
VPS29-203ENST00000546588 MFSD10Q14728 455 aa12.16□□□□□ -0.46
VPS29-203ENST00000546588 DDX27Q96GQ7 796 aaKnown RBP12.16□□□□□ -0.46
VPS29-203ENST00000546588 SIN3AQ96ST3 1273 aa12.16□□□□□ -0.46
VPS29-203ENST00000546588 CCDC144AA2RUR9 1427 aa12.16□□□□□ -0.46
VPS29-203ENST00000546588 TONSLQ96HA7 1378 aa12.16□□□□□ -0.46
VPS29-203ENST00000546588 EVI5O60447 810 aa12.15□□□□□ -0.46
VPS29-203ENST00000546588 IFFO2Q5TF58 517 aa12.15□□□□□ -0.46
VPS29-203ENST00000546588 MADDQ8WXG6 1647 aa12.15□□□□□ -0.47
VPS29-203ENST00000546588 MYO5BQ9ULV0 1848 aa12.14□□□□□ -0.47
VPS29-203ENST00000546588 PPP1R15AO75807 674 aaPredicted RBP12.13□□□□□ -0.47
VPS29-203ENST00000546588 ADAM33Q9BZ11 813 aa12.13□□□□□ -0.47
VPS29-203ENST00000546588 MYOM2P54296 1465 aa12.13□□□□□ -0.47
VPS29-203ENST00000546588 CFAP65Q6ZU64 1925 aaKnown RBP12.13□□□□□ -0.47
VPS29-203ENST00000546588 TMEM131LA2VDJ0 1609 aa12.12□□□□□ -0.47
VPS29-203ENST00000546588 THSD4Q6ZMP0 1018 aa12.12□□□□□ -0.47
VPS29-203ENST00000546588 ZDHHC16Q969W1 377 aa12.12□□□□□ -0.47
VPS29-203ENST00000546588 C3P01024 1663 aa12.12□□□□□ -0.47
VPS29-203ENST00000546588 ADAMTSL3P82987 1691 aa12.12□□□□□ -0.47
VPS29-203ENST00000546588 ERVK-7P63135 1459 aa12.11□□□□□ -0.47
VPS29-203ENST00000546588 RALGAPBQ86X10 1494 aa12.11□□□□□ -0.47
VPS29-203ENST00000546588 NRXN1Q9ULB1 1477 aa12.11□□□□□ -0.47
VPS29-203ENST00000546588 UGGT1Q9NYU2 1555 aa12.1□□□□□ -0.47
VPS29-203ENST00000546588 PTPN5P54829 565 aa12.1□□□□□ -0.47
VPS29-203ENST00000546588 EMILIN3Q9NT22 766 aa12.09□□□□□ -0.47
VPS29-203ENST00000546588 IQGAP1P46940 1657 aa12.08□□□□□ -0.48
VPS29-203ENST00000546588 PRAG1Q86YV5 1406 aa12.07□□□□□ -0.48
VPS29-203ENST00000546588 ARXQ96QS3 562 aa12.07□□□□□ -0.48
VPS29-203ENST00000546588 NEXMIFQ5QGS0 1516 aa12.06□□□□□ -0.48
VPS29-203ENST00000546588 UBR1Q8IWV7 1749 aa12.06□□□□□ -0.48
VPS29-203ENST00000546588 ZMYND10O75800 440 aa12.06□□□□□ -0.48
VPS29-203ENST00000546588 L3MBTL2Q969R5 705 aa12.06□□□□□ -0.48
VPS29-203ENST00000546588 ZNF142P52746 1687 aaPredicted RBP12.06□□□□□ -0.48
VPS29-203ENST00000546588 WASHC2CQ9Y4E1 1318 aa12.06□□□□□ -0.48
VPS29-203ENST00000546588 SETBP1Q9Y6X0 1596 aa12.05□□□□□ -0.48
VPS29-203ENST00000546588 NEUROD1Q13562 356 aa12.05□□□□□ -0.48
VPS29-203ENST00000546588 MRPL50Q8N5N7 158 aaKnown RBP12.05□□□□□ -0.48
VPS29-203ENST00000546588 PCDHGA10Q9Y5H3 936 aa12.05□□□□□ -0.48
VPS29-203ENST00000546588 GPRASP1Q5JY77 1395 aa12.05□□□□□ -0.48
VPS29-203ENST00000546588 SETD1AO15047 1707 aaKnown RBP12.04□□□□□ -0.48
VPS29-203ENST00000546588 RGS20O76081 388 aa12.04□□□□□ -0.48
VPS29-203ENST00000546588 MAP3K9P80192 1104 aa12.04□□□□□ -0.48
VPS29-203ENST00000546588 WNT2BQ93097 391 aa12.04□□□□□ -0.48
VPS29-203ENST00000546588 MYO3AQ8NEV4 1616 aa12.04□□□□□ -0.48
VPS29-203ENST00000546588 ZFYVE9O95405 1425 aa12.03□□□□□ -0.48
VPS29-203ENST00000546588 GGT6Q6P531 493 aa12.03□□□□□ -0.48
VPS29-203ENST00000546588 PPP1R3GB7ZBB8 358 aa12.02□□□□□ -0.49
VPS29-203ENST00000546588 CAMK2BQ13554 666 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms