RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 MYCNP04198 464 aaPredicted RBP19.06■□□□□ 0.64
SCAF11-208ENST00000546534 CFAP70Q5T0N1 1121 aa19.06■□□□□ 0.64
SCAF11-208ENST00000546534 PRAM1Q96QH2 718 aa19.06■□□□□ 0.64
SCAF11-208ENST00000546534 MPHOSPH9Q99550 1183 aa19.06■□□□□ 0.64
SCAF11-208ENST00000546534 DHX57Q6P158 1386 aaKnown RBP19.06■□□□□ 0.64
SCAF11-208ENST00000546534 FAM182BQ5T319 152 aa19.05■□□□□ 0.64
SCAF11-208ENST00000546534 R3HDM1Q15032 1099 aaKnown RBP19.04■□□□□ 0.64
SCAF11-208ENST00000546534 NRAPQ86VF7 1730 aa19.03■□□□□ 0.64
SCAF11-208ENST00000546534 ANKARQ7Z5J8 1434 aa19.02■□□□□ 0.64
SCAF11-208ENST00000546534 POGKQ9P215 609 aa19.01■□□□□ 0.63
SCAF11-208ENST00000546534 SPATA31A5Q5VU36 1347 aa19■□□□□ 0.63
SCAF11-208ENST00000546534 SPATA31A7Q8IWB4 1347 aa19■□□□□ 0.63
SCAF11-208ENST00000546534 TRPM3Q9HCF6 1732 aaPredicted RBP18.99■□□□□ 0.63
SCAF11-208ENST00000546534 DISP2A7MBM2 1401 aa18.99■□□□□ 0.63
SCAF11-208ENST00000546534 COL14A1Q05707 1796 aaKnown RBP18.98■□□□□ 0.63
SCAF11-208ENST00000546534 GPRASP1Q5JY77 1395 aa18.98■□□□□ 0.63
SCAF11-208ENST00000546534 RGPD1P0DJD0 1748 aa18.98■□□□□ 0.63
SCAF11-208ENST00000546534 EZH2Q15910 746 aaKnown RBP18.97■□□□□ 0.63
SCAF11-208ENST00000546534 HIRIP3Q9BW71 556 aaPredicted RBP18.97■□□□□ 0.63
SCAF11-208ENST00000546534 ACIN1Q9UKV3 1341 aaKnown RBP18.97■□□□□ 0.63
SCAF11-208ENST00000546534 DLC1Q96QB1 1528 aa18.96■□□□□ 0.63
SCAF11-208ENST00000546534 ALS2Q96Q42 1657 aa18.96■□□□□ 0.63
SCAF11-208ENST00000546534 C1QBPQ07021 282 aaKnown RBP18.96■□□□□ 0.63
SCAF11-208ENST00000546534 PRR36Q9H6K5 1346 aa18.96■□□□□ 0.63
SCAF11-208ENST00000546534 ADGRB2O60241 1585 aa18.95■□□□□ 0.62
SCAF11-208ENST00000546534 U3KPZ7 1027 aaPredicted RBP18.95■□□□□ 0.62
SCAF11-208ENST00000546534 THSD7AQ9UPZ6 1657 aa18.95■□□□□ 0.62
SCAF11-208ENST00000546534 CAMKK2Q96RR4 588 aa18.94■□□□□ 0.62
SCAF11-208ENST00000546534 PRDM11Q9NQV5 511 aa18.94■□□□□ 0.62
SCAF11-208ENST00000546534 MINK1Q8N4C8 1332 aaPredicted RBP18.94■□□□□ 0.62
SCAF11-208ENST00000546534 TRIM37O94972 964 aa18.93■□□□□ 0.62
SCAF11-208ENST00000546534 TRAK1Q9UPV9 953 aa18.93■□□□□ 0.62
SCAF11-208ENST00000546534 TNS1Q9HBL0 1735 aaKnown RBP18.93■□□□□ 0.62
SCAF11-208ENST00000546534 PAK3O75914 559 aaPredicted RBP18.92■□□□□ 0.62
SCAF11-208ENST00000546534 NGDNQ8NEJ9 315 aaKnown RBP18.91■□□□□ 0.62
SCAF11-208ENST00000546534 SPATA31A1Q5TZJ5 1347 aa18.91■□□□□ 0.62
SCAF11-208ENST00000546534 EIF3AQ14152 1382 aaKnown RBP18.91■□□□□ 0.62
SCAF11-208ENST00000546534 TULP4Q9NRJ4 1543 aa18.9■□□□□ 0.62
SCAF11-208ENST00000546534 ADGRB1O14514 1584 aa18.9■□□□□ 0.62
SCAF11-208ENST00000546534 FAM196AQ6ZSG2 479 aa18.9■□□□□ 0.62
SCAF11-208ENST00000546534 CRYBG1Q9Y4K1 1723 aa18.9■□□□□ 0.62
SCAF11-208ENST00000546534 WASLO00401 505 aaPredicted RBP18.89■□□□□ 0.61
SCAF11-208ENST00000546534 APBA3O96018 575 aa18.89■□□□□ 0.61
SCAF11-208ENST00000546534 CHRNA2Q15822 529 aa18.89■□□□□ 0.61
SCAF11-208ENST00000546534 KIAA0232Q92628 1395 aa18.89■□□□□ 0.61
SCAF11-208ENST00000546534 STRN4Q9NRL3 753 aa18.88■□□□□ 0.61
SCAF11-208ENST00000546534 PARD3Q8TEW0 1356 aa18.86■□□□□ 0.61
SCAF11-208ENST00000546534 ZC3H6P61129 1189 aaKnown RBP18.85■□□□□ 0.61
SCAF11-208ENST00000546534 YY1P25490 414 aa18.84■□□□□ 0.61
SCAF11-208ENST00000546534 USP35Q9P2H5 1018 aa18.84■□□□□ 0.61
SCAF11-208ENST00000546534 NUTM2GQ5VZR2 741 aa18.83■□□□□ 0.6
SCAF11-208ENST00000546534 PDE3BQ13370 1112 aa18.82■□□□□ 0.6
SCAF11-208ENST00000546534 BARGINQ6ZT62 677 aa18.82■□□□□ 0.6
SCAF11-208ENST00000546534 NUDT16Q96DE0 195 aaKnown RBP18.82■□□□□ 0.6
SCAF11-208ENST00000546534 KDM2AQ9Y2K7 1162 aa18.82■□□□□ 0.6
SCAF11-208ENST00000546534 NBPF8Q3BBV2 869 aa18.81■□□□□ 0.6
SCAF11-208ENST00000546534 NBPF14Q5TI25 921 aa18.81■□□□□ 0.6
SCAF11-208ENST00000546534 ATP7BP35670 1465 aa18.8■□□□□ 0.6
SCAF11-208ENST00000546534 EVA1CP58658 441 aa18.8■□□□□ 0.6
SCAF11-208ENST00000546534 PHRF1Q9P1Y6 1649 aaKnown RBP18.8■□□□□ 0.6
SCAF11-208ENST00000546534 SSH2Q76I76 1423 aa18.8■□□□□ 0.6
SCAF11-208ENST00000546534 RREB1Q92766 1687 aa18.79■□□□□ 0.6
SCAF11-208ENST00000546534 DCAF11Q8TEB1 546 aa18.79■□□□□ 0.6
SCAF11-208ENST00000546534 LARP1Q6PKG0 1096 aaKnown RBP18.78■□□□□ 0.6
SCAF11-208ENST00000546534 NUP188Q5SRE5 1749 aa18.77■□□□□ 0.6
SCAF11-208ENST00000546534 TCP11L2Q8N4U5 519 aa18.77■□□□□ 0.6
SCAF11-208ENST00000546534 SPON1Q9HCB6 807 aa18.77■□□□□ 0.6
SCAF11-208ENST00000546534 CAMTA1Q9Y6Y1 1673 aa18.76■□□□□ 0.59
SCAF11-208ENST00000546534 ATXN8OSP0DMR3 200 aa18.76■□□□□ 0.59
SCAF11-208ENST00000546534 SAMD1Q6SPF0 538 aaPredicted RBP18.76■□□□□ 0.59
SCAF11-208ENST00000546534 ACEP12821 1306 aa18.75■□□□□ 0.59
SCAF11-208ENST00000546534 CDK19Q9BWU1 502 aa18.75■□□□□ 0.59
SCAF11-208ENST00000546534 PPP1R1BQ9UD71 204 aaPredicted RBP18.75■□□□□ 0.59
SCAF11-208ENST00000546534 POLR3AO14802 1390 aaPredicted RBP18.75■□□□□ 0.59
SCAF11-208ENST00000546534 ITSN1Q15811 1721 aa18.74■□□□□ 0.59
SCAF11-208ENST00000546534 KCNQ2O43526 872 aa18.74■□□□□ 0.59
SCAF11-208ENST00000546534 CPDO75976 1380 aa18.72■□□□□ 0.59
SCAF11-208ENST00000546534 ABTB2Q8N961 1025 aa18.72■□□□□ 0.59
SCAF11-208ENST00000546534 STAC3Q96MF2 364 aa18.72■□□□□ 0.59
SCAF11-208ENST00000546534 THRAP3Q9Y2W1 955 aaKnown RBP18.72■□□□□ 0.59
SCAF11-208ENST00000546534 NRKQ7Z2Y5 1582 aa18.72■□□□□ 0.59
SCAF11-208ENST00000546534 ARHGEF28Q8N1W1 1705 aaKnown RBP18.71■□□□□ 0.59
SCAF11-208ENST00000546534 LMO7Q8WWI1 1683 aa18.71■□□□□ 0.59
SCAF11-208ENST00000546534 PLEKHG3A1L390 1219 aa18.71■□□□□ 0.59
SCAF11-208ENST00000546534 CCDC61Q9Y6R9 512 aa18.71■□□□□ 0.59
SCAF11-208ENST00000546534 USP19O94966 1318 aa18.71■□□□□ 0.59
SCAF11-208ENST00000546534 NINLQ9Y2I6 1382 aa18.7■□□□□ 0.58
SCAF11-208ENST00000546534 RAB3GAP2Q9H2M9 1393 aa18.69■□□□□ 0.58
SCAF11-208ENST00000546534 GCP02774 474 aa18.69■□□□□ 0.58
SCAF11-208ENST00000546534 TOPAZ1Q8N9V7 1692 aa18.68■□□□□ 0.58
SCAF11-208ENST00000546534 COL5A2P05997 1499 aaPredicted RBP18.67■□□□□ 0.58
SCAF11-208ENST00000546534 C11orf95C9JLR9 678 aaPredicted RBP18.67■□□□□ 0.58
SCAF11-208ENST00000546534 NLRP13Q86W25 1043 aa18.67■□□□□ 0.58
SCAF11-208ENST00000546534 PLSCR1O15162 318 aa18.66■□□□□ 0.58
SCAF11-208ENST00000546534 ANO8Q9HCE9 1232 aaPredicted RBP18.66■□□□□ 0.58
SCAF11-208ENST00000546534 PARP4Q9UKK3 1724 aaKnown RBP18.66■□□□□ 0.58
SCAF11-208ENST00000546534 OVOS2A0A0G2JMS6 1433 aa18.65■□□□□ 0.58
SCAF11-208ENST00000546534 OVOS2A0A0J9YW53 1432 aa18.65■□□□□ 0.58
SCAF11-208ENST00000546534 CRB1P82279 1406 aa18.65■□□□□ 0.58
SCAF11-208ENST00000546534 OVOS2Q6IE36 1432 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms