RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 SPATA31E1Q6ZUB1 1445 aa10.75□□□□□ -0.69
CLIP1-218ENST00000545889 CWC22Q9HCG8 908 aaKnown RBP10.75□□□□□ -0.69
CLIP1-218ENST00000545889 RBM10P98175 930 aaKnown RBP10.74□□□□□ -0.69
CLIP1-218ENST00000545889 TMEM2Q9UHN6 1383 aa10.74□□□□□ -0.69
CLIP1-218ENST00000545889 KIDINS220Q9ULH0 1771 aa10.74□□□□□ -0.69
CLIP1-218ENST00000545889 TRIM34Q9BYJ4 488 aa10.74□□□□□ -0.69
CLIP1-218ENST00000545889 GPRASP1Q5JY77 1395 aa10.74□□□□□ -0.69
CLIP1-218ENST00000545889 CTDP1Q9Y5B0 961 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-218ENST00000545889 PTPRTO14522 1441 aa10.73□□□□□ -0.69
CLIP1-218ENST00000545889 DIP2CQ9Y2E4 1556 aa10.73□□□□□ -0.69
CLIP1-218ENST00000545889 PLCB2Q00722 1185 aa10.73□□□□□ -0.69
CLIP1-218ENST00000545889 FBXW7Q969H0 707 aa10.73□□□□□ -0.69
CLIP1-218ENST00000545889 ZNF692Q9BU19 519 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-218ENST00000545889 ERVK-7P63135 1459 aa10.73□□□□□ -0.69
CLIP1-218ENST00000545889 YTHDC2Q9H6S0 1430 aaKnown RBP10.72□□□□□ -0.69
CLIP1-218ENST00000545889 DDRGK1Q96HY6 314 aa10.72□□□□□ -0.69
CLIP1-218ENST00000545889 GPATCH3Q96I76 525 aa10.72□□□□□ -0.69
CLIP1-218ENST00000545889 NOL10Q9BSC4 688 aaKnown RBP10.72□□□□□ -0.69
CLIP1-218ENST00000545889 ABCA6Q8N139 1617 aa10.72□□□□□ -0.69
CLIP1-218ENST00000545889 INO80Q9ULG1 1556 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-218ENST00000545889 VPS53Q5VIR6 699 aa10.72□□□□□ -0.69
CLIP1-218ENST00000545889 TBX22Q9Y458 520 aa10.72□□□□□ -0.69
CLIP1-218ENST00000545889 EFCAB6Q5THR3 1501 aa10.72□□□□□ -0.69
CLIP1-218ENST00000545889 GLI2P10070 1586 aa10.72□□□□□ -0.69
CLIP1-218ENST00000545889 NEXNQ0ZGT2 675 aa10.72□□□□□ -0.69
CLIP1-218ENST00000545889 TRPM2O94759 1503 aa10.72□□□□□ -0.69
CLIP1-218ENST00000545889 IQGAP3Q86VI3 1631 aa10.71□□□□□ -0.69
CLIP1-218ENST00000545889 HMMRO75330 724 aa10.71□□□□□ -0.69
CLIP1-218ENST00000545889 PHF8Q9UPP1 1060 aa10.71□□□□□ -0.69
CLIP1-218ENST00000545889 PTMAP06454 111 aaKnown RBP10.71□□□□□ -0.69
CLIP1-218ENST00000545889 STRN4Q9NRL3 753 aa10.71□□□□□ -0.7
CLIP1-218ENST00000545889 ELL2O00472 640 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-218ENST00000545889 TET3O43151 1660 aa10.7□□□□□ -0.7
CLIP1-218ENST00000545889 RAD21O60216 631 aa10.7□□□□□ -0.7
CLIP1-218ENST00000545889 ITPRIPQ8IWB1 547 aa10.7□□□□□ -0.7
CLIP1-218ENST00000545889 MARCH6O60337 910 aa10.7□□□□□ -0.7
CLIP1-218ENST00000545889 SLC4A3P48751 1232 aa10.7□□□□□ -0.7
CLIP1-218ENST00000545889 VPS37DQ86XT2 251 aa10.7□□□□□ -0.7
CLIP1-218ENST00000545889 UNC13BO14795 1591 aa10.7□□□□□ -0.7
CLIP1-218ENST00000545889 ACEP12821 1306 aa10.7□□□□□ -0.7
CLIP1-218ENST00000545889 ZC3H6P61129 1189 aaKnown RBP10.7□□□□□ -0.7
CLIP1-218ENST00000545889 PNISRQ8TF01 805 aaKnown RBP10.7□□□□□ -0.7
CLIP1-218ENST00000545889 HSP90AB1P08238 724 aaKnown RBP10.69□□□□□ -0.7
CLIP1-218ENST00000545889 ZRANB1Q9UGI0 708 aa10.69□□□□□ -0.7
CLIP1-218ENST00000545889 BRD4O60885 1362 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-218ENST00000545889 CEP152O94986 1710 aa10.69□□□□□ -0.7
CLIP1-218ENST00000545889 CFAP44Q96MT7 982 aa10.69□□□□□ -0.7
CLIP1-218ENST00000545889 PLEKHH1Q9ULM0 1364 aa10.69□□□□□ -0.7
CLIP1-218ENST00000545889 NRDCO43847 1150 aa10.69□□□□□ -0.7
CLIP1-218ENST00000545889 METP08581 1390 aa10.69□□□□□ -0.7
CLIP1-218ENST00000545889 EIF2S2P20042 333 aaKnown RBP10.69□□□□□ -0.7
CLIP1-218ENST00000545889 CARD14Q9BXL6 1004 aa10.69□□□□□ -0.7
CLIP1-218ENST00000545889 SMC4Q9NTJ3 1288 aa10.69□□□□□ -0.7
CLIP1-218ENST00000545889 KDM5CP41229 1560 aa10.68□□□□□ -0.7
CLIP1-218ENST00000545889 KRI1Q8N9T8 703 aaKnown RBP10.68□□□□□ -0.7
CLIP1-218ENST00000545889 EMILIN1Q9Y6C2 1016 aa10.68□□□□□ -0.7
CLIP1-218ENST00000545889 CLTCL1P53675 1640 aa10.67□□□□□ -0.7
CLIP1-218ENST00000545889 EIF2AK4Q9P2K8 1649 aaKnown RBP10.67□□□□□ -0.7
CLIP1-218ENST00000545889 FAM43AQ8N2R8 423 aa10.67□□□□□ -0.7
CLIP1-218ENST00000545889 BCL2L13Q9BXK5 485 aa10.67□□□□□ -0.7
CLIP1-218ENST00000545889 RCAN3Q9UKA8 241 aa10.67□□□□□ -0.7
CLIP1-218ENST00000545889 RIPK4P57078 832 aa10.67□□□□□ -0.7
CLIP1-218ENST00000545889 TRIM44Q96DX7 344 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-218ENST00000545889 LRPPRCP42704 1394 aaKnown RBP10.67□□□□□ -0.7
CLIP1-218ENST00000545889 AMOTL1Q8IY63 956 aa10.67□□□□□ -0.7
CLIP1-218ENST00000545889 RASSF8Q8NHQ8 419 aa10.67□□□□□ -0.7
CLIP1-218ENST00000545889 PRM3Q9NNZ6 103 aa10.67□□□□□ -0.7
CLIP1-218ENST00000545889 ARHGAP31Q2M1Z3 1444 aa10.67□□□□□ -0.7
CLIP1-218ENST00000545889 TCP11L2Q8N4U5 519 aa10.66□□□□□ -0.7
CLIP1-218ENST00000545889 CDCA7LQ96GN5 454 aa10.66□□□□□ -0.7
CLIP1-218ENST00000545889 E9PCH4 1651 aa10.66□□□□□ -0.7
CLIP1-218ENST00000545889 PDIA4P13667 645 aaKnown RBP10.66□□□□□ -0.7
CLIP1-218ENST00000545889 PRKAR2BP31323 418 aa10.66□□□□□ -0.7
CLIP1-218ENST00000545889 TRIM6-TRIM34B2RNG4 842 aa10.65□□□□□ -0.7
CLIP1-218ENST00000545889 FYB1O15117 783 aa10.65□□□□□ -0.7
CLIP1-218ENST00000545889 PDE3BQ13370 1112 aa10.65□□□□□ -0.7
CLIP1-218ENST00000545889 RUNDC1Q96C34 613 aa10.65□□□□□ -0.7
CLIP1-218ENST00000545889 BCL11BQ9C0K0 894 aaPredicted RBP10.65□□□□□ -0.7
CLIP1-218ENST00000545889 RNF17Q9BXT8 1623 aaKnown RBP10.65□□□□□ -0.7
CLIP1-218ENST00000545889 MAP3K4Q9Y6R4 1608 aa10.65□□□□□ -0.7
CLIP1-218ENST00000545889 SULT6B1Q6IMI4 303 aa10.65□□□□□ -0.7
CLIP1-218ENST00000545889 ZBED9Q6R2W3 1325 aa10.65□□□□□ -0.7
CLIP1-218ENST00000545889 TCERG1O14776 1098 aaKnown RBP10.65□□□□□ -0.7
CLIP1-218ENST00000545889 GOLGA6L6A8MZA4 724 aa10.65□□□□□ -0.71
CLIP1-218ENST00000545889 CLUAP1Q96AJ1 413 aa10.65□□□□□ -0.71
CLIP1-218ENST00000545889 RRP9O43818 475 aaKnown RBP10.64□□□□□ -0.71
CLIP1-218ENST00000545889 PPIP5K1Q6PFW1 1433 aa10.64□□□□□ -0.71
CLIP1-218ENST00000545889 PPRC1Q5VV67 1664 aaKnown RBP10.64□□□□□ -0.71
CLIP1-218ENST00000545889 KIF1BO60333 1816 aa10.64□□□□□ -0.71
CLIP1-218ENST00000545889 KRT28Q7Z3Y7 464 aa10.64□□□□□ -0.71
CLIP1-218ENST00000545889 PRDM11Q9NQV5 511 aa10.64□□□□□ -0.71
CLIP1-218ENST00000545889 C9orf78Q9NZ63 289 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-218ENST00000545889 TCEAL9Q9UHQ7 104 aa10.64□□□□□ -0.71
CLIP1-218ENST00000545889 PER1O15534 1290 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-218ENST00000545889 PLIN1O60240 522 aa10.64□□□□□ -0.71
CLIP1-218ENST00000545889 NFKBIBQ15653 356 aa10.64□□□□□ -0.71
CLIP1-218ENST00000545889 ORAI2Q96SN7 254 aa10.64□□□□□ -0.71
CLIP1-218ENST00000545889 DDX58O95786 925 aaKnown RBP10.63□□□□□ -0.71
CLIP1-218ENST00000545889 CADPS2Q86UW7 1296 aa10.63□□□□□ -0.71
CLIP1-218ENST00000545889 DMRT2Q9Y5R5 561 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms