RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 BRINP3Q76B58 766 aa21.86■■□□□ 1.09
PRPF40A-212ENST00000545856 ORAI2Q96SN7 254 aa21.86■■□□□ 1.09
PRPF40A-212ENST00000545856 ANP32CO43423 234 aa21.85■■□□□ 1.09
PRPF40A-212ENST00000545856 PSME1Q06323 249 aa21.85■■□□□ 1.09
PRPF40A-212ENST00000545856 RALBP1Q15311 655 aa21.85■■□□□ 1.09
PRPF40A-212ENST00000545856 PMFBP1Q8TBY8 1022 aa21.85■■□□□ 1.09
PRPF40A-212ENST00000545856 ALS2Q96Q42 1657 aa21.84■■□□□ 1.09
PRPF40A-212ENST00000545856 TTC21BQ7Z4L5 1316 aa21.83■■□□□ 1.09
PRPF40A-212ENST00000545856 PXDNQ92626 1479 aa21.83■■□□□ 1.09
PRPF40A-212ENST00000545856 PARD3Q8TEW0 1356 aa21.83■■□□□ 1.09
PRPF40A-212ENST00000545856 PIK3C2AO00443 1686 aa21.82■■□□□ 1.08
PRPF40A-212ENST00000545856 USP31Q70CQ4 1352 aa21.82■■□□□ 1.08
PRPF40A-212ENST00000545856 SCAF1Q9H7N4 1312 aaKnown RBP21.81■■□□□ 1.08
PRPF40A-212ENST00000545856 PRKRIP1Q9H875 184 aaPredicted RBP21.79■■□□□ 1.08
PRPF40A-212ENST00000545856 SOS2Q07890 1332 aaPredicted RBP21.79■■□□□ 1.08
PRPF40A-212ENST00000545856 OVOS2A0A0J9YW53 1432 aa21.79■■□□□ 1.08
PRPF40A-212ENST00000545856 OVOS2Q6IE36 1432 aa21.79■■□□□ 1.08
PRPF40A-212ENST00000545856 MED1Q15648 1581 aaPredicted RBP21.78■■□□□ 1.08
PRPF40A-212ENST00000545856 FOXO3O43524 673 aa21.78■■□□□ 1.08
PRPF40A-212ENST00000545856 ARHGEF10O15013 1369 aa21.78■■□□□ 1.08
PRPF40A-212ENST00000545856 TNS3Q68CZ2 1445 aa21.78■■□□□ 1.08
PRPF40A-212ENST00000545856 FYB1O15117 783 aa21.77■■□□□ 1.08
PRPF40A-212ENST00000545856 MARF1Q9Y4F3 1742 aaKnown RBP21.77■■□□□ 1.08
PRPF40A-212ENST00000545856 KRT28Q7Z3Y7 464 aa21.76■■□□□ 1.07
PRPF40A-212ENST00000545856 UBAP1LF5GYI3 381 aa21.75■■□□□ 1.07
PRPF40A-212ENST00000545856 PHLPP1O60346 1717 aa21.75■■□□□ 1.07
PRPF40A-212ENST00000545856 COG3Q96JB2 828 aa21.74■■□□□ 1.07
PRPF40A-212ENST00000545856 AATKQ6ZMQ8 1374 aa21.74■■□□□ 1.07
PRPF40A-212ENST00000545856 MYBBP1AQ9BQG0 1328 aaKnown RBP21.73■■□□□ 1.07
PRPF40A-212ENST00000545856 SLIT3O75094 1523 aa21.72■■□□□ 1.07
PRPF40A-212ENST00000545856 SPATA31A3Q5VYP0 1347 aa21.72■■□□□ 1.07
PRPF40A-212ENST00000545856 COL16A1Q07092 1604 aaPredicted RBP21.72■■□□□ 1.07
PRPF40A-212ENST00000545856 MORC1Q86VD1 984 aa21.72■■□□□ 1.07
PRPF40A-212ENST00000545856 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.72■■□□□ 1.07
PRPF40A-212ENST00000545856 COL22A1Q8NFW1 1626 aaPredicted RBP21.71■■□□□ 1.07
PRPF40A-212ENST00000545856 CC2D1BQ5T0F9 858 aaKnown RBP21.71■■□□□ 1.07
PRPF40A-212ENST00000545856 NLRP13Q86W25 1043 aa21.71■■□□□ 1.07
PRPF40A-212ENST00000545856 CRYBG1Q9Y4K1 1723 aa21.71■■□□□ 1.07
PRPF40A-212ENST00000545856 PHRF1Q9P1Y6 1649 aaKnown RBP21.7■■□□□ 1.06
PRPF40A-212ENST00000545856 CCER2I3L3R5 266 aa21.7■■□□□ 1.06
PRPF40A-212ENST00000545856 ABTB2Q8N961 1025 aa21.7■■□□□ 1.06
PRPF40A-212ENST00000545856 MAP2P11137 1827 aaKnown RBP21.7■■□□□ 1.06
PRPF40A-212ENST00000545856 KIF24Q5T7B8 1368 aa21.69■■□□□ 1.06
PRPF40A-212ENST00000545856 PAK3O75914 559 aaPredicted RBP21.69■■□□□ 1.06
PRPF40A-212ENST00000545856 NME9Q86XW9 330 aa21.69■■□□□ 1.06
PRPF40A-212ENST00000545856 USP19O94966 1318 aa21.68■■□□□ 1.06
PRPF40A-212ENST00000545856 KCNH5Q8NCM2 988 aa21.68■■□□□ 1.06
PRPF40A-212ENST00000545856 LRRC59Q96AG4 307 aaKnown RBP21.68■■□□□ 1.06
PRPF40A-212ENST00000545856 GGNBP2Q9H3C7 697 aa21.68■■□□□ 1.06
PRPF40A-212ENST00000545856 SMG6Q86US8 1419 aaKnown RBP21.68■■□□□ 1.06
PRPF40A-212ENST00000545856 ABCC6O95255 1503 aa21.68■■□□□ 1.06
PRPF40A-212ENST00000545856 SHPRHQ149N8 1683 aa21.66■■□□□ 1.06
PRPF40A-212ENST00000545856 NLRP6P59044 892 aa21.66■■□□□ 1.06
PRPF40A-212ENST00000545856 ABCA3Q99758 1704 aa21.66■■□□□ 1.06
PRPF40A-212ENST00000545856 NFAT5O94916 1531 aa21.65■■□□□ 1.06
PRPF40A-212ENST00000545856 LTN1O94822 1766 aa21.62■■□□□ 1.05
PRPF40A-212ENST00000545856 CDK12Q9NYV4 1490 aaPredicted RBP21.62■■□□□ 1.05
PRPF40A-212ENST00000545856 RTL1A6NKG5 1358 aa21.62■■□□□ 1.05
PRPF40A-212ENST00000545856 PPP2R1AP30153 589 aa21.61■■□□□ 1.05
PRPF40A-212ENST00000545856 XPCQ01831 940 aaPredicted RBP21.61■■□□□ 1.05
PRPF40A-212ENST00000545856 INSRP06213 1382 aa21.61■■□□□ 1.05
PRPF40A-212ENST00000545856 PIP4K2BP78356 416 aa21.6■■□□□ 1.05
PRPF40A-212ENST00000545856 MIER1Q8N108 512 aa21.6■■□□□ 1.05
PRPF40A-212ENST00000545856 DDX17Q92841 729 aaKnown RBP21.59■■□□□ 1.05
PRPF40A-212ENST00000545856 CPDO75976 1380 aa21.57■■□□□ 1.04
PRPF40A-212ENST00000545856 CFAP53Q96M91 514 aa21.57■■□□□ 1.04
PRPF40A-212ENST00000545856 PNPLA6Q8IY17 1366 aa21.56■■□□□ 1.04
PRPF40A-212ENST00000545856 LMOD2Q6P5Q4 547 aa21.56■■□□□ 1.04
PRPF40A-212ENST00000545856 JCADQ9P266 1359 aa21.56■■□□□ 1.04
PRPF40A-212ENST00000545856 GCP02774 474 aa21.55■■□□□ 1.04
PRPF40A-212ENST00000545856 ZRANB1Q9UGI0 708 aa21.55■■□□□ 1.04
PRPF40A-212ENST00000545856 FLT4P35916 1363 aa21.55■■□□□ 1.04
PRPF40A-212ENST00000545856 POLKQ9UBT6 870 aa21.53■■□□□ 1.04
PRPF40A-212ENST00000545856 BLMP54132 1417 aaPredicted RBP21.52■■□□□ 1.04
PRPF40A-212ENST00000545856 FAM208AQ9UK61 1670 aaKnown RBP21.52■■□□□ 1.04
PRPF40A-212ENST00000545856 PEAK1Q9H792 1746 aa21.51■■□□□ 1.03
PRPF40A-212ENST00000545856 COL3A1P02461 1466 aaPredicted RBP21.51■■□□□ 1.03
PRPF40A-212ENST00000545856 MTHFSP49914 203 aa21.51■■□□□ 1.03
PRPF40A-212ENST00000545856 CNGB1Q14028 1251 aaPredicted RBP21.5■■□□□ 1.03
PRPF40A-212ENST00000545856 NUTM2GQ5VZR2 741 aa21.5■■□□□ 1.03
PRPF40A-212ENST00000545856 MRS2Q9HD23 443 aa21.5■■□□□ 1.03
PRPF40A-212ENST00000545856 MAP3K19Q56UN5 1328 aa21.5■■□□□ 1.03
PRPF40A-212ENST00000545856 TNNT2P45379 298 aaPredicted RBP21.49■■□□□ 1.03
PRPF40A-212ENST00000545856 ARHGEF25Q86VW2 580 aa21.49■■□□□ 1.03
PRPF40A-212ENST00000545856 COL18A1P39060 1754 aa21.49■■□□□ 1.03
PRPF40A-212ENST00000545856 COL14A1Q05707 1796 aaKnown RBP21.49■■□□□ 1.03
PRPF40A-212ENST00000545856 SPATA31A6Q5VVP1 1343 aa21.49■■□□□ 1.03
PRPF40A-212ENST00000545856 LMO7Q8WWI1 1683 aa21.47■■□□□ 1.03
PRPF40A-212ENST00000545856 IP6K1Q92551 441 aa21.46■■□□□ 1.03
PRPF40A-212ENST00000545856 NUDCQ9Y266 331 aa21.46■■□□□ 1.03
PRPF40A-212ENST00000545856 EMILIN1Q9Y6C2 1016 aa21.46■■□□□ 1.03
PRPF40A-212ENST00000545856 AMPHP49418 695 aa21.45■■□□□ 1.02
PRPF40A-212ENST00000545856 HAP1P54257 671 aaPredicted RBP21.45■■□□□ 1.02
PRPF40A-212ENST00000545856 FBXO41Q8TF61 875 aa21.45■■□□□ 1.02
PRPF40A-212ENST00000545856 NWD2Q9ULI1 1742 aa21.45■■□□□ 1.02
PRPF40A-212ENST00000545856 RGPD1P0DJD0 1748 aa21.44■■□□□ 1.02
PRPF40A-212ENST00000545856 RRS1Q15050 365 aaKnown RBP21.44■■□□□ 1.02
PRPF40A-212ENST00000545856 HOXC9P31274 260 aa21.43■■□□□ 1.02
PRPF40A-212ENST00000545856 CAMTA1Q9Y6Y1 1673 aa21.42■■□□□ 1.02
PRPF40A-212ENST00000545856 DIAPH1O60610 1272 aaKnown RBP21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms