RNA–Protein interactions for RNA: ENST00000544754.1

LMO3-231, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 555 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-231ENST00000544754 SLAIN2Q9P270 581 aa17.02■□□□□ 0.32
LMO3-231ENST00000544754 TRPM3Q9HCF6 1732 aaPredicted RBP17.01■□□□□ 0.31
LMO3-231ENST00000544754 RALBP1Q15311 655 aa17.01■□□□□ 0.31
LMO3-231ENST00000544754 PIK3C2AO00443 1686 aa17.01■□□□□ 0.31
LMO3-231ENST00000544754 TTC21BQ7Z4L5 1316 aa17■□□□□ 0.31
LMO3-231ENST00000544754 FYB1O15117 783 aa17■□□□□ 0.31
LMO3-231ENST00000544754 FOXO3O43524 673 aa16.99■□□□□ 0.31
LMO3-231ENST00000544754 BRINP3Q76B58 766 aa16.99■□□□□ 0.31
LMO3-231ENST00000544754 GGNBP2Q9H3C7 697 aa16.99■□□□□ 0.31
LMO3-231ENST00000544754 BRD4O60885 1362 aaPredicted RBP16.99■□□□□ 0.31
LMO3-231ENST00000544754 IQSEC2Q5JU85 1478 aa16.99■□□□□ 0.31
LMO3-231ENST00000544754 TTC21AQ8NDW8 1320 aa16.98■□□□□ 0.31
LMO3-231ENST00000544754 USP54Q70EL1 1684 aa16.98■□□□□ 0.31
LMO3-231ENST00000544754 NME9Q86XW9 330 aa16.98■□□□□ 0.31
LMO3-231ENST00000544754 NHSL1Q5SYE7 1610 aa16.98■□□□□ 0.31
LMO3-231ENST00000544754 MARF1Q9Y4F3 1742 aaKnown RBP16.98■□□□□ 0.31
LMO3-231ENST00000544754 PSME1Q06323 249 aa16.97■□□□□ 0.31
LMO3-231ENST00000544754 ROBO1Q9Y6N7 1651 aa16.97■□□□□ 0.31
LMO3-231ENST00000544754 MYBBP1AQ9BQG0 1328 aaKnown RBP16.96■□□□□ 0.31
LMO3-231ENST00000544754 MORC1Q86VD1 984 aa16.96■□□□□ 0.31
LMO3-231ENST00000544754 ALS2Q96Q42 1657 aa16.96■□□□□ 0.31
LMO3-231ENST00000544754 PXDNQ92626 1479 aa16.95■□□□□ 0.3
LMO3-231ENST00000544754 CCER2I3L3R5 266 aa16.95■□□□□ 0.3
LMO3-231ENST00000544754 XPCQ01831 940 aaPredicted RBP16.95■□□□□ 0.3
LMO3-231ENST00000544754 KRT28Q7Z3Y7 464 aa16.95■□□□□ 0.3
LMO3-231ENST00000544754 DDX17Q92841 729 aaKnown RBP16.95■□□□□ 0.3
LMO3-231ENST00000544754 ZRANB1Q9UGI0 708 aa16.95■□□□□ 0.3
LMO3-231ENST00000544754 OVOS2A0A0J9YW53 1432 aa16.95■□□□□ 0.3
LMO3-231ENST00000544754 OVOS2Q6IE36 1432 aa16.95■□□□□ 0.3
LMO3-231ENST00000544754 NPHP3Q7Z494 1330 aa16.95■□□□□ 0.3
LMO3-231ENST00000544754 PAK3O75914 559 aaPredicted RBP16.93■□□□□ 0.3
LMO3-231ENST00000544754 MAP2P11137 1827 aaKnown RBP16.93■□□□□ 0.3
LMO3-231ENST00000544754 USP31Q70CQ4 1352 aa16.92■□□□□ 0.3
LMO3-231ENST00000544754 PPP2R1AP30153 589 aa16.92■□□□□ 0.3
LMO3-231ENST00000544754 CERKQ8TCT0 537 aa16.92■□□□□ 0.3
LMO3-231ENST00000544754 TNNT2P45379 298 aaPredicted RBP16.91■□□□□ 0.3
LMO3-231ENST00000544754 CCDC184Q52MB2 194 aa16.91■□□□□ 0.3
LMO3-231ENST00000544754 COG3Q96JB2 828 aa16.91■□□□□ 0.3
LMO3-231ENST00000544754 SBNO1A3KN83 1393 aa16.9■□□□□ 0.3
LMO3-231ENST00000544754 AHDC1Q5TGY3 1603 aaPredicted RBP16.9■□□□□ 0.3
LMO3-231ENST00000544754 TOM1O60784 492 aa16.9■□□□□ 0.3
LMO3-231ENST00000544754 NLRP13Q86W25 1043 aa16.9■□□□□ 0.3
LMO3-231ENST00000544754 ABTB2Q8N961 1025 aa16.9■□□□□ 0.3
LMO3-231ENST00000544754 SOS2Q07890 1332 aaPredicted RBP16.89■□□□□ 0.29
LMO3-231ENST00000544754 SCAF1Q9H7N4 1312 aaKnown RBP16.89■□□□□ 0.29
LMO3-231ENST00000544754 TNS3Q68CZ2 1445 aa16.88■□□□□ 0.29
LMO3-231ENST00000544754 NLRP6P59044 892 aa16.88■□□□□ 0.29
LMO3-231ENST00000544754 NUTM2GQ5VZR2 741 aa16.88■□□□□ 0.29
LMO3-231ENST00000544754 PPP4R3CPQ6ZMV5 832 aa16.88■□□□□ 0.29
LMO3-231ENST00000544754 CRYBG1Q9Y4K1 1723 aa16.87■□□□□ 0.29
LMO3-231ENST00000544754 UBAP1LF5GYI3 381 aa16.87■□□□□ 0.29
LMO3-231ENST00000544754 MRS2Q9HD23 443 aa16.87■□□□□ 0.29
LMO3-231ENST00000544754 PHLPP1O60346 1717 aa16.86■□□□□ 0.29
LMO3-231ENST00000544754 SPATA31A3Q5VYP0 1347 aa16.86■□□□□ 0.29
LMO3-231ENST00000544754 AATKQ6ZMQ8 1374 aa16.86■□□□□ 0.29
LMO3-231ENST00000544754 SLIT3O75094 1523 aa16.86■□□□□ 0.29
LMO3-231ENST00000544754 PHRF1Q9P1Y6 1649 aaKnown RBP16.85■□□□□ 0.29
LMO3-231ENST00000544754 FBLN1P23142 703 aa16.85■□□□□ 0.29
LMO3-231ENST00000544754 MED1Q15648 1581 aaPredicted RBP16.85■□□□□ 0.29
LMO3-231ENST00000544754 LMOD2Q6P5Q4 547 aa16.84■□□□□ 0.29
LMO3-231ENST00000544754 LTN1O94822 1766 aa16.84■□□□□ 0.29
LMO3-231ENST00000544754 ARHGEF10O15013 1369 aa16.83■□□□□ 0.28
LMO3-231ENST00000544754 NFAT5O94916 1531 aa16.83■□□□□ 0.28
LMO3-231ENST00000544754 USP19O94966 1318 aa16.83■□□□□ 0.28
LMO3-231ENST00000544754 MTHFSP49914 203 aa16.83■□□□□ 0.28
LMO3-231ENST00000544754 PIP4K2BP78356 416 aa16.83■□□□□ 0.28
LMO3-231ENST00000544754 COL16A1Q07092 1604 aaPredicted RBP16.83■□□□□ 0.28
LMO3-231ENST00000544754 SMG6Q86US8 1419 aaKnown RBP16.83■□□□□ 0.28
LMO3-231ENST00000544754 ABCA3Q99758 1704 aa16.82■□□□□ 0.28
LMO3-231ENST00000544754 PEAK1Q9H792 1746 aa16.82■□□□□ 0.28
LMO3-231ENST00000544754 POLKQ9UBT6 870 aa16.82■□□□□ 0.28
LMO3-231ENST00000544754 SHPRHQ149N8 1683 aa16.81■□□□□ 0.28
LMO3-231ENST00000544754 SOX12O15370 315 aa16.81■□□□□ 0.28
LMO3-231ENST00000544754 RRS1Q15050 365 aaKnown RBP16.8■□□□□ 0.28
LMO3-231ENST00000544754 EMILIN1Q9Y6C2 1016 aa16.8■□□□□ 0.28
LMO3-231ENST00000544754 COL3A1P02461 1466 aaPredicted RBP16.8■□□□□ 0.28
LMO3-231ENST00000544754 CDK12Q9NYV4 1490 aaPredicted RBP16.8■□□□□ 0.28
LMO3-231ENST00000544754 KCNA4P22459 653 aa16.79■□□□□ 0.28
LMO3-231ENST00000544754 PLEKHG5O94827 1062 aa16.78■□□□□ 0.28
LMO3-231ENST00000544754 KCNH5Q8NCM2 988 aa16.78■□□□□ 0.28
LMO3-231ENST00000544754 PNISRQ8TF01 805 aaKnown RBP16.78■□□□□ 0.28
LMO3-231ENST00000544754 COL22A1Q8NFW1 1626 aaPredicted RBP16.78■□□□□ 0.28
LMO3-231ENST00000544754 MAP3K19Q56UN5 1328 aa16.77■□□□□ 0.28
LMO3-231ENST00000544754 CFAP53Q96M91 514 aa16.77■□□□□ 0.28
LMO3-231ENST00000544754 INSRP06213 1382 aa16.77■□□□□ 0.27
LMO3-231ENST00000544754 PNPLA6Q8IY17 1366 aa16.77■□□□□ 0.27
LMO3-231ENST00000544754 PPM1GO15355 546 aaPredicted RBP16.76■□□□□ 0.27
LMO3-231ENST00000544754 GCP02774 474 aa16.76■□□□□ 0.27
LMO3-231ENST00000544754 LRRC59Q96AG4 307 aaKnown RBP16.76■□□□□ 0.27
LMO3-231ENST00000544754 FAM9BQ8IZU0 186 aa16.75■□□□□ 0.27
LMO3-231ENST00000544754 CABLES1Q8TDN4 633 aa16.75■□□□□ 0.27
LMO3-231ENST00000544754 KIF24Q5T7B8 1368 aa16.74■□□□□ 0.27
LMO3-231ENST00000544754 RGPD5Q99666 1765 aa16.74■□□□□ 0.27
LMO3-231ENST00000544754 RTL1A6NKG5 1358 aa16.73■□□□□ 0.27
LMO3-231ENST00000544754 FLT4P35916 1363 aa16.73■□□□□ 0.27
LMO3-231ENST00000544754 COL18A1P39060 1754 aa16.72■□□□□ 0.27
LMO3-231ENST00000544754 AMPHP49418 695 aa16.72■□□□□ 0.27
LMO3-231ENST00000544754 ARHGEF25Q86VW2 580 aa16.72■□□□□ 0.27
LMO3-231ENST00000544754 ZBTB7CA1YPR0 619 aa16.7■□□□□ 0.26
LMO3-231ENST00000544754 DIAPH1O60610 1272 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms