RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 WDR62O43379 1518 aa17.27■□□□□ 0.36
LIMS1-215ENST00000544547 VGFO15240 615 aaPredicted RBP17.26■□□□□ 0.35
LIMS1-215ENST00000544547 DIAPH1O60610 1272 aaKnown RBP17.26■□□□□ 0.35
LIMS1-215ENST00000544547 STAC3Q96MF2 364 aa17.26■□□□□ 0.35
LIMS1-215ENST00000544547 DYNC1I1O14576 645 aa17.26■□□□□ 0.35
LIMS1-215ENST00000544547 FIBPO43427 364 aa17.25■□□□□ 0.35
LIMS1-215ENST00000544547 VPS37CA5D8V6 355 aaPredicted RBP17.25■□□□□ 0.35
LIMS1-215ENST00000544547 RLBP1P12271 317 aa17.25■□□□□ 0.35
LIMS1-215ENST00000544547 KLHL40Q2TBA0 621 aa17.25■□□□□ 0.35
LIMS1-215ENST00000544547 ZNF330Q9Y3S2 320 aaPredicted RBP17.25■□□□□ 0.35
LIMS1-215ENST00000544547 PRAG1Q86YV5 1406 aa17.25■□□□□ 0.35
LIMS1-215ENST00000544547 ERICH4A6NGS2 130 aa17.24■□□□□ 0.35
LIMS1-215ENST00000544547 ADGRF5Q8IZF2 1346 aa17.24■□□□□ 0.35
LIMS1-215ENST00000544547 CSB-PGBD3P0DP91 1061 aa17.24■□□□□ 0.35
LIMS1-215ENST00000544547 ZSCAN23Q3MJ62 389 aa17.24■□□□□ 0.35
LIMS1-215ENST00000544547 USP25Q9UHP3 1055 aa17.23■□□□□ 0.35
LIMS1-215ENST00000544547 PRIM1P49642 420 aaKnown RBP17.23■□□□□ 0.35
LIMS1-215ENST00000544547 GAS2L3Q86XJ1 694 aa17.23■□□□□ 0.35
LIMS1-215ENST00000544547 GDPD2Q9HCC8 539 aa17.23■□□□□ 0.35
LIMS1-215ENST00000544547 NINLQ9Y2I6 1382 aa17.23■□□□□ 0.35
LIMS1-215ENST00000544547 SAMD9Q5K651 1589 aa17.23■□□□□ 0.35
LIMS1-215ENST00000544547 GOLGA6L19H0YKK7 550 aa17.23■□□□□ 0.35
LIMS1-215ENST00000544547 SCAPERQ9BY12 1400 aa17.23■□□□□ 0.35
LIMS1-215ENST00000544547 FBXW7Q969H0 707 aa17.22■□□□□ 0.35
LIMS1-215ENST00000544547 TRERF1Q96PN7 1200 aa17.22■□□□□ 0.35
LIMS1-215ENST00000544547 STK31Q9BXU1 1019 aa17.22■□□□□ 0.35
LIMS1-215ENST00000544547 ATP6V1DQ9Y5K8 247 aa17.22■□□□□ 0.35
LIMS1-215ENST00000544547 SSH1Q8WYL5 1049 aa17.22■□□□□ 0.35
LIMS1-215ENST00000544547 BECN2A8MW95 431 aa17.21■□□□□ 0.35
LIMS1-215ENST00000544547 DENND4BO75064 1496 aaPredicted RBP17.21■□□□□ 0.35
LIMS1-215ENST00000544547 RAPGEF6Q8TEU7 1601 aa17.21■□□□□ 0.35
LIMS1-215ENST00000544547 ATP10BO94823 1461 aa17.21■□□□□ 0.35
LIMS1-215ENST00000544547 TPD52L1Q16890 204 aaPredicted RBP17.21■□□□□ 0.35
LIMS1-215ENST00000544547 WDR63Q8IWG1 891 aa17.21■□□□□ 0.34
LIMS1-215ENST00000544547 CCAR2Q8N163 923 aaKnown RBP17.21■□□□□ 0.34
LIMS1-215ENST00000544547 CWC22Q9HCG8 908 aaKnown RBP17.21■□□□□ 0.34
LIMS1-215ENST00000544547 TRIM5Q9C035 493 aa17.2■□□□□ 0.34
LIMS1-215ENST00000544547 ZKSCAN5Q9Y2L8 839 aa17.2■□□□□ 0.34
LIMS1-215ENST00000544547 DMRT2Q9Y5R5 561 aa17.19■□□□□ 0.34
LIMS1-215ENST00000544547 NSD3Q9BZ95 1437 aa17.19■□□□□ 0.34
LIMS1-215ENST00000544547 GAS2L2Q8NHY3 880 aa17.19■□□□□ 0.34
LIMS1-215ENST00000544547 CCDC66A2RUB6 948 aa17.19■□□□□ 0.34
LIMS1-215ENST00000544547 HTATSF1O43719 755 aaKnown RBP17.19■□□□□ 0.34
LIMS1-215ENST00000544547 GCC1Q96CN9 775 aa17.19■□□□□ 0.34
LIMS1-215ENST00000544547 SMC3Q9UQE7 1217 aa17.19■□□□□ 0.34
LIMS1-215ENST00000544547 TRIM27P14373 513 aa17.19■□□□□ 0.34
LIMS1-215ENST00000544547 NGDNQ8NEJ9 315 aaKnown RBP17.19■□□□□ 0.34
LIMS1-215ENST00000544547 TSC1Q92574 1164 aa17.19■□□□□ 0.34
LIMS1-215ENST00000544547 DNMT1P26358 1616 aaKnown RBP17.18■□□□□ 0.34
LIMS1-215ENST00000544547 PDE4CQ08493 712 aa17.18■□□□□ 0.34
LIMS1-215ENST00000544547 GNL2Q13823 731 aaKnown RBP17.18■□□□□ 0.34
LIMS1-215ENST00000544547 FSD2A1L4K1 749 aa17.18■□□□□ 0.34
LIMS1-215ENST00000544547 KIF14Q15058 1648 aa17.18■□□□□ 0.34
LIMS1-215ENST00000544547 TBC1D9Q6ZT07 1266 aa17.17■□□□□ 0.34
LIMS1-215ENST00000544547 RAB3GAP1Q15042 981 aa17.17■□□□□ 0.34
LIMS1-215ENST00000544547 API5Q9BZZ5 524 aaKnown RBP17.17■□□□□ 0.34
LIMS1-215ENST00000544547 PRKAR2BP31323 418 aa17.16■□□□□ 0.34
LIMS1-215ENST00000544547 BICD2Q8TD16 824 aa17.16■□□□□ 0.34
LIMS1-215ENST00000544547 DISP1Q96F81 1524 aa17.16■□□□□ 0.34
LIMS1-215ENST00000544547 TTC12Q9H892 705 aaPredicted RBP17.16■□□□□ 0.34
LIMS1-215ENST00000544547 ERBB4Q15303 1308 aa17.15■□□□□ 0.34
LIMS1-215ENST00000544547 HSP90B1P14625 803 aaKnown RBP17.15■□□□□ 0.34
LIMS1-215ENST00000544547 CHMP4AQ9BY43 222 aa17.15■□□□□ 0.34
LIMS1-215ENST00000544547 UHRF1BP1Q6BDS2 1440 aa17.15■□□□□ 0.34
LIMS1-215ENST00000544547 HOMER1Q86YM7 354 aa17.15■□□□□ 0.34
LIMS1-215ENST00000544547 CCDC112Q8NEF3 446 aa17.15■□□□□ 0.34
LIMS1-215ENST00000544547 LTV1Q96GA3 475 aaPredicted RBP17.15■□□□□ 0.34
LIMS1-215ENST00000544547 RBSNQ9H1K0 784 aa17.15■□□□□ 0.34
LIMS1-215ENST00000544547 THUMPD2Q9BTF0 503 aaKnown RBP17.15■□□□□ 0.34
LIMS1-215ENST00000544547 KDM5BQ9UGL1 1544 aa17.14■□□□□ 0.33
LIMS1-215ENST00000544547 GCC2Q8IWJ2 1684 aa17.14■□□□□ 0.33
LIMS1-215ENST00000544547 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.14■□□□□ 0.33
LIMS1-215ENST00000544547 UPF3BQ9BZI7 483 aaKnown RBP17.14■□□□□ 0.33
LIMS1-215ENST00000544547 AMPHP49418 695 aa17.13■□□□□ 0.33
LIMS1-215ENST00000544547 NECTIN2Q92692 538 aa17.13■□□□□ 0.33
LIMS1-215ENST00000544547 CARD14Q9BXL6 1004 aa17.13■□□□□ 0.33
LIMS1-215ENST00000544547 FAM135AQ9P2D6 1515 aa17.13■□□□□ 0.33
LIMS1-215ENST00000544547 ANTXR1Q9H6X2 564 aa17.13■□□□□ 0.33
LIMS1-215ENST00000544547 CCDC94Q9BW85 323 aaPredicted RBP17.13■□□□□ 0.33
LIMS1-215ENST00000544547 KIAA0556O60303 1618 aa17.13■□□□□ 0.33
LIMS1-215ENST00000544547 EID1Q9Y6B2 187 aa17.13■□□□□ 0.33
LIMS1-215ENST00000544547 GORABQ5T7V8 394 aa17.12■□□□□ 0.33
LIMS1-215ENST00000544547 SMC5Q8IY18 1101 aa17.12■□□□□ 0.33
LIMS1-215ENST00000544547 SMAP1Q8IYB5 467 aaPredicted RBP17.12■□□□□ 0.33
LIMS1-215ENST00000544547 TMPOP42166 694 aaKnown RBP17.12■□□□□ 0.33
LIMS1-215ENST00000544547 PRAM1Q96QH2 718 aa17.12■□□□□ 0.33
LIMS1-215ENST00000544547 MCM5P33992 734 aa17.11■□□□□ 0.33
LIMS1-215ENST00000544547 ABCA5Q8WWZ7 1642 aa17.11■□□□□ 0.33
LIMS1-215ENST00000544547 ADCY5O95622 1261 aa17.11■□□□□ 0.33
LIMS1-215ENST00000544547 NOLC1Q14978 699 aaKnown RBP eCLIP17.11■□□□□ 0.33
LIMS1-215ENST00000544547 TEX35Q5T0J7 233 aa17.11■□□□□ 0.33
LIMS1-215ENST00000544547 NOL7Q9UMY1 257 aaKnown RBP17.11■□□□□ 0.33
LIMS1-215ENST00000544547 ADAMTS12P58397 1594 aa17.1■□□□□ 0.33
LIMS1-215ENST00000544547 ERC2O15083 957 aa17.1■□□□□ 0.33
LIMS1-215ENST00000544547 LRSAM1Q6UWE0 723 aa17.1■□□□□ 0.33
LIMS1-215ENST00000544547 SMARCA5O60264 1052 aaPredicted RBP17.1■□□□□ 0.33
LIMS1-215ENST00000544547 C16orf45Q96MC5 204 aaPredicted RBP17.1■□□□□ 0.33
LIMS1-215ENST00000544547 SCAF11Q99590 1463 aaKnown RBP17.1■□□□□ 0.33
LIMS1-215ENST00000544547 C17orf53Q8N3J3 647 aaPredicted RBP17.1■□□□□ 0.33
LIMS1-215ENST00000544547 CABP1Q9NZU7 370 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms