RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 PRM3Q9NNZ6 103 aa15.47■□□□□ 0.07
CHD4-211ENST00000544484 CC2D2AQ9P2K1 1620 aa15.46■□□□□ 0.07
CHD4-211ENST00000544484 TATP17735 454 aaPredicted RBP15.46■□□□□ 0.07
CHD4-211ENST00000544484 NEK4P51957 841 aa15.46■□□□□ 0.07
CHD4-211ENST00000544484 ZNF530Q6P9A1 599 aaPredicted RBP15.46■□□□□ 0.07
CHD4-211ENST00000544484 CDK13Q14004 1512 aaKnown RBP15.46■□□□□ 0.07
CHD4-211ENST00000544484 TOP2BQ02880 1626 aa15.46■□□□□ 0.07
CHD4-211ENST00000544484 GNAI2P04899 355 aa15.46■□□□□ 0.06
CHD4-211ENST00000544484 RTEL1-TNFRSF6BF6WH68 1400 aa15.45■□□□□ 0.06
CHD4-211ENST00000544484 ZNF692Q9BU19 519 aaPredicted RBP15.45■□□□□ 0.06
CHD4-211ENST00000544484 NINLQ9Y2I6 1382 aa15.45■□□□□ 0.06
CHD4-211ENST00000544484 SAFBQ15424 915 aaKnown RBP eCLIP15.45■□□□□ 0.06
CHD4-211ENST00000544484 SIL1Q9H173 461 aa15.45■□□□□ 0.06
CHD4-211ENST00000544484 TIAM1Q13009 1591 aa15.45■□□□□ 0.06
CHD4-211ENST00000544484 SASS6Q6UVJ0 657 aa15.45■□□□□ 0.06
CHD4-211ENST00000544484 PDE3AQ14432 1141 aa15.45■□□□□ 0.06
CHD4-211ENST00000544484 CCDC73Q6ZRK6 1079 aa15.45■□□□□ 0.06
CHD4-211ENST00000544484 TOM1L2Q6ZVM7 507 aa15.44■□□□□ 0.06
CHD4-211ENST00000544484 PLEKHH2Q8IVE3 1493 aa15.44■□□□□ 0.06
CHD4-211ENST00000544484 MYL6BP14649 208 aa15.44■□□□□ 0.06
CHD4-211ENST00000544484 CCDC47Q96A33 483 aaKnown RBP15.43■□□□□ 0.06
CHD4-211ENST00000544484 KIF6Q6ZMV9 814 aa15.43■□□□□ 0.06
CHD4-211ENST00000544484 SMG6Q86US8 1419 aaKnown RBP15.42■□□□□ 0.06
CHD4-211ENST00000544484 RNF214Q8ND24 703 aa15.42■□□□□ 0.06
CHD4-211ENST00000544484 MAP4K4O95819 1239 aaPredicted RBP15.42■□□□□ 0.06
CHD4-211ENST00000544484 ATP2B1P20020 1258 aa15.42■□□□□ 0.06
CHD4-211ENST00000544484 CABP4P57796 275 aa15.42■□□□□ 0.06
CHD4-211ENST00000544484 NUTM2BA6NNL0 878 aaPredicted RBP15.42■□□□□ 0.06
CHD4-211ENST00000544484 NUTM2EB1AL46 878 aaPredicted RBP15.42■□□□□ 0.06
CHD4-211ENST00000544484 NUTM2AQ8IVF1 878 aaPredicted RBP15.42■□□□□ 0.06
CHD4-211ENST00000544484 HECW1Q76N89 1606 aa15.42■□□□□ 0.06
CHD4-211ENST00000544484 PSMA5P28066 241 aa15.42■□□□□ 0.06
CHD4-211ENST00000544484 ANKRD20A12PQ8NF67 263 aa15.41■□□□□ 0.06
CHD4-211ENST00000544484 HOOK1Q9UJC3 728 aaKnown RBP15.41■□□□□ 0.06
CHD4-211ENST00000544484 ATF7IPQ6VMQ6 1270 aa15.41■□□□□ 0.06
CHD4-211ENST00000544484 HOMER1Q86YM7 354 aa15.41■□□□□ 0.06
CHD4-211ENST00000544484 TBC1D2BQ9UPU7 963 aa15.41■□□□□ 0.06
CHD4-211ENST00000544484 WDR97A6NE52 1622 aa15.41■□□□□ 0.06
CHD4-211ENST00000544484 GCC1Q96CN9 775 aa15.41■□□□□ 0.06
CHD4-211ENST00000544484 RRP12Q5JTH9 1297 aaKnown RBP15.41■□□□□ 0.06
CHD4-211ENST00000544484 IPO7O95373 1038 aaKnown RBP15.4■□□□□ 0.06
CHD4-211ENST00000544484 CNNM1Q9NRU3 951 aa15.4■□□□□ 0.06
CHD4-211ENST00000544484 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.4■□□□□ 0.06
CHD4-211ENST00000544484 WAPLQ7Z5K2 1190 aa15.4■□□□□ 0.06
CHD4-211ENST00000544484 SRCIN1Q9C0H9 1055 aa15.4■□□□□ 0.06
CHD4-211ENST00000544484 WDR63Q8IWG1 891 aa15.4■□□□□ 0.06
CHD4-211ENST00000544484 ZC3H6P61129 1189 aaKnown RBP15.39■□□□□ 0.05
CHD4-211ENST00000544484 THUMPD2Q9BTF0 503 aaKnown RBP15.39■□□□□ 0.05
CHD4-211ENST00000544484 BCL11BQ9C0K0 894 aaPredicted RBP15.39■□□□□ 0.05
CHD4-211ENST00000544484 STK11IPQ8N1F8 1099 aa15.39■□□□□ 0.05
CHD4-211ENST00000544484 SDF4Q9BRK5 362 aa15.39■□□□□ 0.05
CHD4-211ENST00000544484 ANKLE2Q86XL3 938 aa15.39■□□□□ 0.05
CHD4-211ENST00000544484 ARHGEF11O15085 1522 aa15.39■□□□□ 0.05
CHD4-211ENST00000544484 MIS18AQ9NYP9 233 aa15.39■□□□□ 0.05
CHD4-211ENST00000544484 HSP90AA2PQ14568 343 aaPredicted RBP15.38■□□□□ 0.05
CHD4-211ENST00000544484 EPRSP07814 1512 aaKnown RBP15.38■□□□□ 0.05
CHD4-211ENST00000544484 NAIPQ13075 1403 aa15.38■□□□□ 0.05
CHD4-211ENST00000544484 DNAJC5BQ9UF47 199 aa15.38■□□□□ 0.05
CHD4-211ENST00000544484 CCT4P50991 539 aaKnown RBP15.38■□□□□ 0.05
CHD4-211ENST00000544484 MVPQ14764 893 aaKnown RBP15.38■□□□□ 0.05
CHD4-211ENST00000544484 CCDC43Q96MW1 224 aaKnown RBP15.38■□□□□ 0.05
CHD4-211ENST00000544484 PRDM11Q9NQV5 511 aa15.38■□□□□ 0.05
CHD4-211ENST00000544484 NUDT16Q96DE0 195 aaKnown RBP15.37■□□□□ 0.05
CHD4-211ENST00000544484 PHF23Q9BUL5 403 aaPredicted RBP15.37■□□□□ 0.05
CHD4-211ENST00000544484 NSD3Q9BZ95 1437 aa15.37■□□□□ 0.05
CHD4-211ENST00000544484 LRRCC1Q9C099 1032 aa15.37■□□□□ 0.05
CHD4-211ENST00000544484 SUPT6HQ7KZ85 1726 aaKnown RBP15.37■□□□□ 0.05
CHD4-211ENST00000544484 CAVIN1Q6NZI2 390 aaKnown RBP15.37■□□□□ 0.05
CHD4-211ENST00000544484 TNNT3P45378 269 aaPredicted RBP15.37■□□□□ 0.05
CHD4-211ENST00000544484 CEBPZQ03701 1054 aaKnown RBP15.37■□□□□ 0.05
CHD4-211ENST00000544484 IKQ13123 557 aaPredicted RBP15.37■□□□□ 0.05
CHD4-211ENST00000544484 TTC39AQ5SRH9 613 aa15.37■□□□□ 0.05
CHD4-211ENST00000544484 ANKRD30BQ9BXX2 1392 aa15.37■□□□□ 0.05
CHD4-211ENST00000544484 ERC1Q8IUD2 1116 aa15.36■□□□□ 0.05
CHD4-211ENST00000544484 PRPF40AO75400 957 aaKnown RBP15.36■□□□□ 0.05
CHD4-211ENST00000544484 TRAK2O60296 914 aa15.36■□□□□ 0.05
CHD4-211ENST00000544484 STK3Q13188 491 aa15.36■□□□□ 0.05
CHD4-211ENST00000544484 RPGRIP1LQ68CZ1 1315 aa15.36■□□□□ 0.05
CHD4-211ENST00000544484 IL1RAPL2Q9NP60 686 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 FIBPO43427 364 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 CCDC158Q5M9N0 1113 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 SPG7Q9UQ90 795 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 SART3Q15020 963 aaKnown RBP15.35■□□□□ 0.05
CHD4-211ENST00000544484 IFT57Q9NWB7 429 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 CCDC61Q9Y6R9 512 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 ATAD2Q6PL18 1390 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 C11orf95C9JLR9 678 aaPredicted RBP15.35■□□□□ 0.05
CHD4-211ENST00000544484 BTBD11A6QL63 1104 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 SRGAP3O43295 1099 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 TMPOP42166 694 aaKnown RBP15.35■□□□□ 0.05
CHD4-211ENST00000544484 DCTN1Q14203 1278 aa15.35■□□□□ 0.05
CHD4-211ENST00000544484 BRMS1Q9HCU9 246 aa15.34■□□□□ 0.05
CHD4-211ENST00000544484 RABEP1Q15276 862 aa15.34■□□□□ 0.05
CHD4-211ENST00000544484 FCHSD2O94868 740 aa15.34■□□□□ 0.05
CHD4-211ENST00000544484 XBP1P17861 261 aa15.34■□□□□ 0.05
CHD4-211ENST00000544484 CCDC85AQ96PX6 553 aaPredicted RBP15.34■□□□□ 0.05
CHD4-211ENST00000544484 DNMBPQ6XZF7 1577 aa15.34■□□□□ 0.05
CHD4-211ENST00000544484 HMGXB3Q12766 1538 aa15.34■□□□□ 0.05
CHD4-211ENST00000544484 MCM10Q7L590 875 aa15.33■□□□□ 0.05
CHD4-211ENST00000544484 KIAA0586Q9BVV6 1533 aa15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms