RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 IFFO2Q5TF58 517 aa7.72□□□□□ -1.17
NPIPB3-211ENST00000542953 C1orf167Q5SNV9 1468 aa7.72□□□□□ -1.17
NPIPB3-211ENST00000542953 ABCC5O15440 1437 aa7.71□□□□□ -1.17
NPIPB3-211ENST00000542953 GCC2Q8IWJ2 1684 aa7.71□□□□□ -1.18
NPIPB3-211ENST00000542953 RRP7BPQ9NSQ0 103 aa7.71□□□□□ -1.18
NPIPB3-211ENST00000542953 CROCC2H7BZ55 1655 aa7.7□□□□□ -1.18
NPIPB3-211ENST00000542953 RALGAPBQ86X10 1494 aa7.7□□□□□ -1.18
NPIPB3-211ENST00000542953 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.7□□□□□ -1.18
NPIPB3-211ENST00000542953 SF3B2Q13435 895 aaKnown RBP7.7□□□□□ -1.18
NPIPB3-211ENST00000542953 DCAF8Q5TAQ9 597 aa7.7□□□□□ -1.18
NPIPB3-211ENST00000542953 MYO5BQ9ULV0 1848 aa7.7□□□□□ -1.18
NPIPB3-211ENST00000542953 GLI3P10071 1580 aa7.7□□□□□ -1.18
NPIPB3-211ENST00000542953 PTPN23Q9H3S7 1636 aa7.7□□□□□ -1.18
NPIPB3-211ENST00000542953 PSDA5PKW4 1024 aaPredicted RBP7.69□□□□□ -1.18
NPIPB3-211ENST00000542953 SLIT2O94813 1529 aa7.68□□□□□ -1.18
NPIPB3-211ENST00000542953 NRXN3Q9Y4C0 1643 aa7.68□□□□□ -1.18
NPIPB3-211ENST00000542953 PYGBP11216 843 aa7.68□□□□□ -1.18
NPIPB3-211ENST00000542953 NALCNQ8IZF0 1738 aa7.67□□□□□ -1.18
NPIPB3-211ENST00000542953 ONECUT3O60422 494 aaPredicted RBP7.67□□□□□ -1.18
NPIPB3-211ENST00000542953 UNC5CLQ8IV45 518 aa7.67□□□□□ -1.18
NPIPB3-211ENST00000542953 MARVELD3Q96A59 401 aa7.67□□□□□ -1.18
NPIPB3-211ENST00000542953 METP08581 1390 aa7.67□□□□□ -1.18
NPIPB3-211ENST00000542953 DAPK1P53355 1430 aa7.67□□□□□ -1.18
NPIPB3-211ENST00000542953 BAG6P46379 1132 aa7.66□□□□□ -1.18
NPIPB3-211ENST00000542953 C3orf67Q6ZVT6 689 aa7.66□□□□□ -1.18
NPIPB3-211ENST00000542953 SEPT12Q8IYM1 358 aa7.66□□□□□ -1.18
NPIPB3-211ENST00000542953 L3MBTL3Q96JM7 780 aaPredicted RBP7.66□□□□□ -1.18
NPIPB3-211ENST00000542953 PCDHB8Q9UN66 801 aa7.66□□□□□ -1.18
NPIPB3-211ENST00000542953 ANKRD30AQ9BXX3 1397 aa7.66□□□□□ -1.18
NPIPB3-211ENST00000542953 DISP2A7MBM2 1401 aa7.66□□□□□ -1.18
NPIPB3-211ENST00000542953 PXDNQ92626 1479 aa7.66□□□□□ -1.18
NPIPB3-211ENST00000542953 MARF1Q9Y4F3 1742 aaKnown RBP7.66□□□□□ -1.18
NPIPB3-211ENST00000542953 UTRNP46939 3433 aa7.65□□□□□ -1.18
NPIPB3-211ENST00000542953 BRWD3Q6RI45 1802 aa7.65□□□□□ -1.18
NPIPB3-211ENST00000542953 PRAG1Q86YV5 1406 aa7.65□□□□□ -1.18
NPIPB3-211ENST00000542953 PDCD7Q8N8D1 485 aaKnown RBP7.65□□□□□ -1.18
NPIPB3-211ENST00000542953 ORAI2Q96SN7 254 aa7.65□□□□□ -1.18
NPIPB3-211ENST00000542953 ADGRL2O95490 1459 aa7.64□□□□□ -1.19
NPIPB3-211ENST00000542953 NPHP3Q7Z494 1330 aa7.64□□□□□ -1.19
NPIPB3-211ENST00000542953 R3HDM1Q15032 1099 aaKnown RBP7.64□□□□□ -1.19
NPIPB3-211ENST00000542953 KRT27Q7Z3Y8 459 aa7.64□□□□□ -1.19
NPIPB3-211ENST00000542953 ZNF467Q7Z7K2 595 aaPredicted RBP7.64□□□□□ -1.19
NPIPB3-211ENST00000542953 CEP350Q5VT06 3117 aa7.63□□□□□ -1.19
NPIPB3-211ENST00000542953 CHGAP10645 457 aaKnown RBP7.63□□□□□ -1.19
NPIPB3-211ENST00000542953 EMP3P54852 163 aa7.63□□□□□ -1.19
NPIPB3-211ENST00000542953 GOLGA2Q08379 1002 aa7.63□□□□□ -1.19
NPIPB3-211ENST00000542953 MKRN3Q13064 507 aaKnown RBP7.63□□□□□ -1.19
NPIPB3-211ENST00000542953 VPS72Q15906 364 aa7.63□□□□□ -1.19
NPIPB3-211ENST00000542953 IQGAP3Q86VI3 1631 aa7.63□□□□□ -1.19
NPIPB3-211ENST00000542953 FBXO3Q9UK99 471 aa7.62□□□□□ -1.19
NPIPB3-211ENST00000542953 ANKRD50Q9ULJ7 1429 aa7.61□□□□□ -1.19
NPIPB3-211ENST00000542953 EN1Q05925 392 aaPredicted RBP7.61□□□□□ -1.19
NPIPB3-211ENST00000542953 GSE1Q14687 1217 aa7.61□□□□□ -1.19
NPIPB3-211ENST00000542953 KANK4Q5T7N3 995 aaPredicted RBP7.61□□□□□ -1.19
NPIPB3-211ENST00000542953 ROBO2Q9HCK4 1378 aa7.6□□□□□ -1.19
NPIPB3-211ENST00000542953 NINLQ9Y2I6 1382 aa7.6□□□□□ -1.19
NPIPB3-211ENST00000542953 USP32Q8NFA0 1604 aa7.6□□□□□ -1.19
NPIPB3-211ENST00000542953 FKBP8Q14318 412 aa7.6□□□□□ -1.19
NPIPB3-211ENST00000542953 E9PCH4 1651 aa7.6□□□□□ -1.19
NPIPB3-211ENST00000542953 PARD3Q8TEW0 1356 aa7.59□□□□□ -1.19
NPIPB3-211ENST00000542953 RGPD1P0DJD0 1748 aa7.59□□□□□ -1.19
NPIPB3-211ENST00000542953 SENP3-EIF4A1A0A087X0R7 540 aa7.59□□□□□ -1.19
NPIPB3-211ENST00000542953 CHRM1P11229 460 aaPredicted RBP7.59□□□□□ -1.19
NPIPB3-211ENST00000542953 ZNF784Q8NCA9 323 aaPredicted RBP7.59□□□□□ -1.19
NPIPB3-211ENST00000542953 HFM1A2PYH4 1435 aa7.59□□□□□ -1.19
NPIPB3-211ENST00000542953 VPS8Q8N3P4 1428 aa7.59□□□□□ -1.19
NPIPB3-211ENST00000542953 CDC42BPGQ6DT37 1551 aa7.59□□□□□ -1.2
NPIPB3-211ENST00000542953 LRPPRCP42704 1394 aaKnown RBP7.59□□□□□ -1.2
NPIPB3-211ENST00000542953 NWD2Q9ULI1 1742 aa7.58□□□□□ -1.2
NPIPB3-211ENST00000542953 SPATA31A3Q5VYP0 1347 aa7.58□□□□□ -1.2
NPIPB3-211ENST00000542953 HS3ST6Q96QI5 342 aa7.58□□□□□ -1.2
NPIPB3-211ENST00000542953 CAMKK2Q96RR4 588 aa7.58□□□□□ -1.2
NPIPB3-211ENST00000542953 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.58□□□□□ -1.2
NPIPB3-211ENST00000542953 CHIC2Q9UKJ5 165 aa7.58□□□□□ -1.2
NPIPB3-211ENST00000542953 TNS1Q9HBL0 1735 aaKnown RBP7.58□□□□□ -1.2
NPIPB3-211ENST00000542953 FOXO3O43524 673 aa7.57□□□□□ -1.2
NPIPB3-211ENST00000542953 C1QTNF8P60827 252 aa7.57□□□□□ -1.2
NPIPB3-211ENST00000542953 EZH2Q15910 746 aaKnown RBP7.57□□□□□ -1.2
NPIPB3-211ENST00000542953 KRTAP3-3Q9BYR6 98 aa7.57□□□□□ -1.2
NPIPB3-211ENST00000542953 KRTAP3-2Q9BYR7 98 aa7.57□□□□□ -1.2
NPIPB3-211ENST00000542953 ADGRB2O60241 1585 aa7.57□□□□□ -1.2
NPIPB3-211ENST00000542953 NEXMIFQ5QGS0 1516 aa7.57□□□□□ -1.2
NPIPB3-211ENST00000542953 FAM205CA6NFA0 338 aa7.56□□□□□ -1.2
NPIPB3-211ENST00000542953 XPCQ01831 940 aaPredicted RBP7.56□□□□□ -1.2
NPIPB3-211ENST00000542953 ESCO1Q5FWF5 840 aa7.56□□□□□ -1.2
NPIPB3-211ENST00000542953 CCDC144AA2RUR9 1427 aa7.55□□□□□ -1.2
NPIPB3-211ENST00000542953 PLCH1Q4KWH8 1693 aa7.55□□□□□ -1.2
NPIPB3-211ENST00000542953 TNS3Q68CZ2 1445 aa7.54□□□□□ -1.2
NPIPB3-211ENST00000542953 PSEN1P49768 467 aa7.54□□□□□ -1.2
NPIPB3-211ENST00000542953 FAM98CQ17RN3 349 aaKnown RBP7.54□□□□□ -1.2
NPIPB3-211ENST00000542953 SPON1Q9HCB6 807 aa7.54□□□□□ -1.2
NPIPB3-211ENST00000542953 CCDC9Q9Y3X0 531 aaKnown RBP7.54□□□□□ -1.2
NPIPB3-211ENST00000542953 RREB1Q92766 1687 aa7.54□□□□□ -1.2
NPIPB3-211ENST00000542953 THSD7AQ9UPZ6 1657 aa7.54□□□□□ -1.2
NPIPB3-211ENST00000542953 NRAPQ86VF7 1730 aa7.53□□□□□ -1.2
NPIPB3-211ENST00000542953 POTEB3A0JP26 581 aa7.53□□□□□ -1.2
NPIPB3-211ENST00000542953 KCNQ2O43526 872 aa7.53□□□□□ -1.2
NPIPB3-211ENST00000542953 POTEBQ6S5H4 581 aa7.53□□□□□ -1.2
NPIPB3-211ENST00000542953 PPP1R1BQ9UD71 204 aaPredicted RBP7.53□□□□□ -1.2
NPIPB3-211ENST00000542953 NAIPQ13075 1403 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms