RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 BTG4Q9NY30 223 aa7.36□□□□□ -1.23
LIMS1-214ENST00000542845 STK26Q9P289 416 aa7.36□□□□□ -1.23
LIMS1-214ENST00000542845 IQGAP3Q86VI3 1631 aa7.35□□□□□ -1.23
LIMS1-214ENST00000542845 WAPLQ7Z5K2 1190 aa7.35□□□□□ -1.23
LIMS1-214ENST00000542845 ADGRL2O95490 1459 aa7.35□□□□□ -1.23
LIMS1-214ENST00000542845 ITGAEP38570 1179 aa7.34□□□□□ -1.23
LIMS1-214ENST00000542845 PSME1Q06323 249 aa7.34□□□□□ -1.23
LIMS1-214ENST00000542845 TNS1Q9HBL0 1735 aaKnown RBP7.34□□□□□ -1.23
LIMS1-214ENST00000542845 NWD2Q9ULI1 1742 aa7.34□□□□□ -1.23
LIMS1-214ENST00000542845 LOC105371045A0A1W2PR82 267 aa7.33□□□□□ -1.24
LIMS1-214ENST00000542845 VGFO15240 615 aaPredicted RBP7.33□□□□□ -1.24
LIMS1-214ENST00000542845 HFM1A2PYH4 1435 aa7.33□□□□□ -1.24
LIMS1-214ENST00000542845 RGPD8O14715 1765 aaPredicted RBP7.33□□□□□ -1.24
LIMS1-214ENST00000542845 NEXMIFQ5QGS0 1516 aa7.32□□□□□ -1.24
LIMS1-214ENST00000542845 KIF1BO60333 1816 aa7.32□□□□□ -1.24
LIMS1-214ENST00000542845 VASPP50552 380 aaPredicted RBP7.32□□□□□ -1.24
LIMS1-214ENST00000542845 FAM196AQ6ZSG2 479 aa7.32□□□□□ -1.24
LIMS1-214ENST00000542845 USP35Q9P2H5 1018 aa7.32□□□□□ -1.24
LIMS1-214ENST00000542845 NAIPQ13075 1403 aa7.32□□□□□ -1.24
LIMS1-214ENST00000542845 NINLQ9Y2I6 1382 aa7.32□□□□□ -1.24
LIMS1-214ENST00000542845 PDE3BQ13370 1112 aa7.31□□□□□ -1.24
LIMS1-214ENST00000542845 PMFBP1Q8TBY8 1022 aa7.31□□□□□ -1.24
LIMS1-214ENST00000542845 STRN4Q9NRL3 753 aa7.31□□□□□ -1.24
LIMS1-214ENST00000542845 NUP188Q5SRE5 1749 aa7.3□□□□□ -1.24
LIMS1-214ENST00000542845 ADGRB2O60241 1585 aa7.3□□□□□ -1.24
LIMS1-214ENST00000542845 CDC42BPGQ6DT37 1551 aa7.3□□□□□ -1.24
LIMS1-214ENST00000542845 CCDC144AA2RUR9 1427 aa7.3□□□□□ -1.24
LIMS1-214ENST00000542845 DISP2A7MBM2 1401 aa7.3□□□□□ -1.24
LIMS1-214ENST00000542845 ZBTB7AO95365 584 aa7.3□□□□□ -1.24
LIMS1-214ENST00000542845 PHF8Q9UPP1 1060 aa7.3□□□□□ -1.24
LIMS1-214ENST00000542845 SPATA31A5Q5VU36 1347 aa7.29□□□□□ -1.24
LIMS1-214ENST00000542845 SPATA31A7Q8IWB4 1347 aa7.29□□□□□ -1.24
LIMS1-214ENST00000542845 CHD4Q14839 1912 aa7.29□□□□□ -1.24
LIMS1-214ENST00000542845 TNS3Q68CZ2 1445 aa7.29□□□□□ -1.24
LIMS1-214ENST00000542845 GIGYF1O75420 1035 aaPredicted RBP7.29□□□□□ -1.24
LIMS1-214ENST00000542845 TMEM132EQ6IEE7 984 aa7.29□□□□□ -1.24
LIMS1-214ENST00000542845 ZBTB12Q9Y330 459 aaPredicted RBP7.29□□□□□ -1.24
LIMS1-214ENST00000542845 CLTCL1P53675 1640 aa7.29□□□□□ -1.24
LIMS1-214ENST00000542845 NRAPQ86VF7 1730 aa7.29□□□□□ -1.24
LIMS1-214ENST00000542845 ABCA3Q99758 1704 aa7.29□□□□□ -1.24
LIMS1-214ENST00000542845 KIF1AQ12756 1690 aa7.28□□□□□ -1.24
LIMS1-214ENST00000542845 RREB1Q92766 1687 aa7.28□□□□□ -1.24
LIMS1-214ENST00000542845 PAK3O75914 559 aaPredicted RBP7.28□□□□□ -1.24
LIMS1-214ENST00000542845 EVA1CP58658 441 aa7.28□□□□□ -1.24
LIMS1-214ENST00000542845 SAFB2Q14151 953 aaKnown RBP eCLIP7.28□□□□□ -1.24
LIMS1-214ENST00000542845 PELP1Q8IZL8 1130 aaKnown RBP7.28□□□□□ -1.24
LIMS1-214ENST00000542845 PDGFDQ9GZP0 370 aaPredicted RBP7.28□□□□□ -1.24
LIMS1-214ENST00000542845 FMN2Q9NZ56 1722 aa7.27□□□□□ -1.25
LIMS1-214ENST00000542845 PLCB2Q00722 1185 aa7.27□□□□□ -1.25
LIMS1-214ENST00000542845 MKRN4PQ13434 485 aaPredicted RBP7.27□□□□□ -1.25
LIMS1-214ENST00000542845 CHRNA2Q15822 529 aa7.27□□□□□ -1.25
LIMS1-214ENST00000542845 FHDC1Q9C0D6 1143 aaPredicted RBP7.27□□□□□ -1.25
LIMS1-214ENST00000542845 BCL11BQ9C0K0 894 aaPredicted RBP7.27□□□□□ -1.25
LIMS1-214ENST00000542845 PRDM11Q9NQV5 511 aa7.27□□□□□ -1.25
LIMS1-214ENST00000542845 ARHGEF10O15013 1369 aa7.27□□□□□ -1.25
LIMS1-214ENST00000542845 PARD3Q8TEW0 1356 aa7.27□□□□□ -1.25
LIMS1-214ENST00000542845 PLEKHH1Q9ULM0 1364 aa7.27□□□□□ -1.25
LIMS1-214ENST00000542845 NRKQ7Z2Y5 1582 aa7.27□□□□□ -1.25
LIMS1-214ENST00000542845 COL14A1Q05707 1796 aaKnown RBP7.27□□□□□ -1.25
LIMS1-214ENST00000542845 GPR162Q16538 588 aa7.26□□□□□ -1.25
LIMS1-214ENST00000542845 SYT17Q9BSW7 474 aa7.26□□□□□ -1.25
LIMS1-214ENST00000542845 SPATA31A1Q5TZJ5 1347 aa7.26□□□□□ -1.25
LIMS1-214ENST00000542845 MYOM1P52179 1685 aa7.25□□□□□ -1.25
LIMS1-214ENST00000542845 THSD7AQ9UPZ6 1657 aa7.25□□□□□ -1.25
LIMS1-214ENST00000542845 SBNO1A3KN83 1393 aa7.25□□□□□ -1.25
LIMS1-214ENST00000542845 ZC3H6P61129 1189 aaKnown RBP7.25□□□□□ -1.25
LIMS1-214ENST00000542845 RGL3Q3MIN7 710 aa7.25□□□□□ -1.25
LIMS1-214ENST00000542845 LHX8Q68G74 356 aa7.25□□□□□ -1.25
LIMS1-214ENST00000542845 KLHL34Q8N239 644 aa7.25□□□□□ -1.25
LIMS1-214ENST00000542845 IFT172Q9UG01 1749 aa7.24□□□□□ -1.25
LIMS1-214ENST00000542845 PPLO60437 1756 aa7.24□□□□□ -1.25
LIMS1-214ENST00000542845 ANO8Q9HCE9 1232 aaPredicted RBP7.24□□□□□ -1.25
LIMS1-214ENST00000542845 RPGRIP1LQ68CZ1 1315 aa7.24□□□□□ -1.25
LIMS1-214ENST00000542845 ADGRF5Q8IZF2 1346 aa7.24□□□□□ -1.25
LIMS1-214ENST00000542845 PTGER2P43116 358 aa7.23□□□□□ -1.25
LIMS1-214ENST00000542845 NUTM2GQ5VZR2 741 aa7.23□□□□□ -1.25
LIMS1-214ENST00000542845 TECPR2O15040 1411 aa7.23□□□□□ -1.25
LIMS1-214ENST00000542845 GPRASP1Q5JY77 1395 aa7.22□□□□□ -1.25
LIMS1-214ENST00000542845 ZBTB7CA1YPR0 619 aa7.22□□□□□ -1.25
LIMS1-214ENST00000542845 NGDNQ8NEJ9 315 aaKnown RBP7.22□□□□□ -1.25
LIMS1-214ENST00000542845 STK32BQ9NY57 414 aa7.22□□□□□ -1.25
LIMS1-214ENST00000542845 NRXN1Q9ULB1 1477 aa7.22□□□□□ -1.25
LIMS1-214ENST00000542845 ROCK1Q13464 1354 aa7.21□□□□□ -1.25
LIMS1-214ENST00000542845 KIAA0232Q92628 1395 aa7.21□□□□□ -1.25
LIMS1-214ENST00000542845 CASZ1Q86V15 1759 aa7.21□□□□□ -1.25
LIMS1-214ENST00000542845 PRAG1Q86YV5 1406 aa7.21□□□□□ -1.25
LIMS1-214ENST00000542845 LARP1Q6PKG0 1096 aaKnown RBP7.21□□□□□ -1.26
LIMS1-214ENST00000542845 HIRIP3Q9BW71 556 aaPredicted RBP7.21□□□□□ -1.26
LIMS1-214ENST00000542845 POGKQ9P215 609 aa7.21□□□□□ -1.26
LIMS1-214ENST00000542845 ABCC11Q96J66 1382 aa7.2□□□□□ -1.26
LIMS1-214ENST00000542845 RRBP1Q9P2E9 1410 aaKnown RBP7.2□□□□□ -1.26
LIMS1-214ENST00000542845 PTF1AQ7RTS3 328 aa7.2□□□□□ -1.26
LIMS1-214ENST00000542845 TCP11L2Q8N4U5 519 aa7.2□□□□□ -1.26
LIMS1-214ENST00000542845 PRAM1Q96QH2 718 aa7.2□□□□□ -1.26
LIMS1-214ENST00000542845 ARXQ96QS3 562 aa7.2□□□□□ -1.26
LIMS1-214ENST00000542845 YTHDC2Q9H6S0 1430 aaKnown RBP7.19□□□□□ -1.26
LIMS1-214ENST00000542845 ALS2Q96Q42 1657 aa7.19□□□□□ -1.26
LIMS1-214ENST00000542845 TRPM3Q9HCF6 1732 aaPredicted RBP7.19□□□□□ -1.26
LIMS1-214ENST00000542845 DLC1Q96QB1 1528 aa7.19□□□□□ -1.26
LIMS1-214ENST00000542845 PLSCR1O15162 318 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms