RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 PDE3BQ13370 1112 aa12.2□□□□□ -0.46
CHMP4A-209ENST00000542700 ARXQ96QS3 562 aa12.2□□□□□ -0.46
CHMP4A-209ENST00000542700 BCL11BQ9C0K0 894 aaPredicted RBP12.2□□□□□ -0.46
CHMP4A-209ENST00000542700 GPBP1L1Q9HC44 474 aaPredicted RBP12.2□□□□□ -0.46
CHMP4A-209ENST00000542700 SPATA31A1Q5TZJ5 1347 aa12.19□□□□□ -0.46
CHMP4A-209ENST00000542700 PSME1Q06323 249 aa12.19□□□□□ -0.46
CHMP4A-209ENST00000542700 SGIP1Q9BQI5 828 aa12.19□□□□□ -0.46
CHMP4A-209ENST00000542700 ANKRD50Q9ULJ7 1429 aa12.19□□□□□ -0.46
CHMP4A-209ENST00000542700 MAP3K5Q99683 1374 aa12.18□□□□□ -0.46
CHMP4A-209ENST00000542700 MTFR1LQ9H019 292 aa12.18□□□□□ -0.46
CHMP4A-209ENST00000542700 KLHL34Q8N239 644 aa12.17□□□□□ -0.46
CHMP4A-209ENST00000542700 ZNF526Q8TF50 670 aaPredicted RBP12.17□□□□□ -0.46
CHMP4A-209ENST00000542700 USP35Q9P2H5 1018 aa12.17□□□□□ -0.46
CHMP4A-209ENST00000542700 TECPR2O15040 1411 aa12.17□□□□□ -0.46
CHMP4A-209ENST00000542700 SBNO1A3KN83 1393 aa12.17□□□□□ -0.46
CHMP4A-209ENST00000542700 RGPD3A6NKT7 1758 aaPredicted RBP12.16□□□□□ -0.46
CHMP4A-209ENST00000542700 RGPD4Q7Z3J3 1758 aa12.16□□□□□ -0.46
CHMP4A-209ENST00000542700 APLP1P51693 650 aa12.15□□□□□ -0.46
CHMP4A-209ENST00000542700 STRN4Q9NRL3 753 aa12.15□□□□□ -0.46
CHMP4A-209ENST00000542700 FMN2Q9NZ56 1722 aa12.14□□□□□ -0.47
CHMP4A-209ENST00000542700 KANK4Q5T7N3 995 aaPredicted RBP12.14□□□□□ -0.47
CHMP4A-209ENST00000542700 DNAJC5GQ8N7S2 189 aa12.14□□□□□ -0.47
CHMP4A-209ENST00000542700 STK32BQ9NY57 414 aa12.14□□□□□ -0.47
CHMP4A-209ENST00000542700 PLSCR1O15162 318 aa12.13□□□□□ -0.47
CHMP4A-209ENST00000542700 PRDM11Q9NQV5 511 aa12.13□□□□□ -0.47
CHMP4A-209ENST00000542700 PHF8Q9UPP1 1060 aa12.13□□□□□ -0.47
CHMP4A-209ENST00000542700 SLC15A2Q16348 729 aa12.11□□□□□ -0.47
CHMP4A-209ENST00000542700 WAPLQ7Z5K2 1190 aa12.11□□□□□ -0.47
CHMP4A-209ENST00000542700 NRXN1Q9ULB1 1477 aa12.1□□□□□ -0.47
CHMP4A-209ENST00000542700 BARGINQ6ZT62 677 aa12.1□□□□□ -0.47
CHMP4A-209ENST00000542700 PROM2Q8N271 834 aa12.1□□□□□ -0.47
CHMP4A-209ENST00000542700 WWC3Q9ULE0 1092 aa12.1□□□□□ -0.47
CHMP4A-209ENST00000542700 YBX3P16989 372 aaKnown RBP eCLIP12.09□□□□□ -0.47
CHMP4A-209ENST00000542700 CHRNA2Q15822 529 aa12.09□□□□□ -0.47
CHMP4A-209ENST00000542700 PTF1AQ7RTS3 328 aa12.09□□□□□ -0.47
CHMP4A-209ENST00000542700 NLGN2Q8NFZ4 835 aa12.09□□□□□ -0.47
CHMP4A-209ENST00000542700 PLEKHH1Q9ULM0 1364 aa12.08□□□□□ -0.48
CHMP4A-209ENST00000542700 GRIN3BO60391 1043 aa12.08□□□□□ -0.48
CHMP4A-209ENST00000542700 OVOS2A0A0G2JMS6 1433 aa12.08□□□□□ -0.48
CHMP4A-209ENST00000542700 OVOS2A0A0J9YW53 1432 aa12.08□□□□□ -0.48
CHMP4A-209ENST00000542700 OVOS2Q6IE36 1432 aa12.08□□□□□ -0.48
CHMP4A-209ENST00000542700 GOLGB1Q14789 3259 aaKnown RBP12.08□□□□□ -0.48
CHMP4A-209ENST00000542700 RGPD8O14715 1765 aaPredicted RBP12.07□□□□□ -0.48
CHMP4A-209ENST00000542700 ADCY9O60503 1353 aa12.07□□□□□ -0.48
CHMP4A-209ENST00000542700 STK26Q9P289 416 aa12.07□□□□□ -0.48
CHMP4A-209ENST00000542700 KIAA0232Q92628 1395 aa12.06□□□□□ -0.48
CHMP4A-209ENST00000542700 SSH2Q76I76 1423 aa12.06□□□□□ -0.48
CHMP4A-209ENST00000542700 CLTCL1P53675 1640 aa12.06□□□□□ -0.48
CHMP4A-209ENST00000542700 PEAK1Q9H792 1746 aa12.06□□□□□ -0.48
CHMP4A-209ENST00000542700 C11orf95C9JLR9 678 aaPredicted RBP12.05□□□□□ -0.48
CHMP4A-209ENST00000542700 KIF3CO14782 793 aa12.05□□□□□ -0.48
CHMP4A-209ENST00000542700 VGFO15240 615 aaPredicted RBP12.05□□□□□ -0.48
CHMP4A-209ENST00000542700 TXNRD1Q16881 649 aa12.05□□□□□ -0.48
CHMP4A-209ENST00000542700 TRPM3Q9HCF6 1732 aaPredicted RBP12.05□□□□□ -0.48
CHMP4A-209ENST00000542700 CRYBG1Q9Y4K1 1723 aa12.05□□□□□ -0.48
CHMP4A-209ENST00000542700 ALS2Q96Q42 1657 aa12.04□□□□□ -0.48
CHMP4A-209ENST00000542700 IFT172Q9UG01 1749 aa12.04□□□□□ -0.48
CHMP4A-209ENST00000542700 TCP11L2Q8N4U5 519 aa12.04□□□□□ -0.48
CHMP4A-209ENST00000542700 JMYQ8N9B5 988 aa12.04□□□□□ -0.48
CHMP4A-209ENST00000542700 PMFBP1Q8TBY8 1022 aa12.04□□□□□ -0.48
CHMP4A-209ENST00000542700 KLRG1Q96E93 195 aa12.04□□□□□ -0.48
CHMP4A-209ENST00000542700 NUP155O75694 1391 aa12.04□□□□□ -0.48
CHMP4A-209ENST00000542700 SBF2Q86WG5 1849 aa12.03□□□□□ -0.48
CHMP4A-209ENST00000542700 EVA1CP58658 441 aa12.03□□□□□ -0.48
CHMP4A-209ENST00000542700 HTRA3P83110 453 aa12.03□□□□□ -0.48
CHMP4A-209ENST00000542700 LARP1Q6PKG0 1096 aaKnown RBP12.03□□□□□ -0.48
CHMP4A-209ENST00000542700 AATKQ6ZMQ8 1374 aa12.03□□□□□ -0.48
CHMP4A-209ENST00000542700 WDR90Q96KV7 1748 aa12.03□□□□□ -0.48
CHMP4A-209ENST00000542700 PARP4Q9UKK3 1724 aaKnown RBP12.03□□□□□ -0.48
CHMP4A-209ENST00000542700 DHX57Q6P158 1386 aaKnown RBP12.02□□□□□ -0.49
CHMP4A-209ENST00000542700 POLD1P28340 1107 aa12.01□□□□□ -0.49
CHMP4A-209ENST00000542700 TOPAZ1Q8N9V7 1692 aa12□□□□□ -0.49
CHMP4A-209ENST00000542700 ZC3H6P61129 1189 aaKnown RBP12□□□□□ -0.49
CHMP4A-209ENST00000542700 ATP7BP35670 1465 aa12□□□□□ -0.49
CHMP4A-209ENST00000542700 GPRASP1Q5JY77 1395 aa11.99□□□□□ -0.49
CHMP4A-209ENST00000542700 KIF1BO60333 1816 aa11.99□□□□□ -0.49
CHMP4A-209ENST00000542700 LRRC37A3O60309 1634 aa11.98□□□□□ -0.49
CHMP4A-209ENST00000542700 TNS2Q63HR2 1409 aa11.98□□□□□ -0.49
CHMP4A-209ENST00000542700 KNDC1Q76NI1 1749 aa11.97□□□□□ -0.49
CHMP4A-209ENST00000542700 PAK3O75914 559 aaPredicted RBP11.97□□□□□ -0.49
CHMP4A-209ENST00000542700 THRAP3Q9Y2W1 955 aaKnown RBP11.97□□□□□ -0.49
CHMP4A-209ENST00000542700 VPS8Q8N3P4 1428 aa11.96□□□□□ -0.49
CHMP4A-209ENST00000542700 ABCC11Q96J66 1382 aa11.96□□□□□ -0.49
CHMP4A-209ENST00000542700 ACIN1Q9UKV3 1341 aaKnown RBP11.96□□□□□ -0.49
CHMP4A-209ENST00000542700 TOMM70O94826 608 aa11.96□□□□□ -0.49
CHMP4A-209ENST00000542700 ZNF827Q17R98 1081 aa11.96□□□□□ -0.49
CHMP4A-209ENST00000542700 PAPPAQ13219 1627 aa11.96□□□□□ -0.5
CHMP4A-209ENST00000542700 PHRF1Q9P1Y6 1649 aaKnown RBP11.96□□□□□ -0.5
CHMP4A-209ENST00000542700 HSPA1AP0DMV8 641 aaKnown RBP11.95□□□□□ -0.5
CHMP4A-209ENST00000542700 HSPA1BP0DMV9 641 aaKnown RBP11.95□□□□□ -0.5
CHMP4A-209ENST00000542700 FAM50AQ14320 339 aaKnown RBP11.95□□□□□ -0.5
CHMP4A-209ENST00000542700 FAM161AQ3B820 660 aa11.95□□□□□ -0.5
CHMP4A-209ENST00000542700 DDB1Q16531 1140 aa11.94□□□□□ -0.5
CHMP4A-209ENST00000542700 TMEM132EQ6IEE7 984 aa11.94□□□□□ -0.5
CHMP4A-209ENST00000542700 PPLO60437 1756 aa11.94□□□□□ -0.5
CHMP4A-209ENST00000542700 ANKARQ7Z5J8 1434 aa11.94□□□□□ -0.5
CHMP4A-209ENST00000542700 RPGRIP1LQ68CZ1 1315 aa11.92□□□□□ -0.5
CHMP4A-209ENST00000542700 SAFB2Q14151 953 aaKnown RBP eCLIP11.92□□□□□ -0.5
CHMP4A-209ENST00000542700 TULP4Q9NRJ4 1543 aa11.91□□□□□ -0.5
CHMP4A-209ENST00000542700 LMO7Q8WWI1 1683 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms