RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 ANKRD26Q9UPS8 1709 aa9.9□□□□□ -0.82
VPS53-205ENST00000541903 TTC21BQ7Z4L5 1316 aa9.9□□□□□ -0.82
VPS53-205ENST00000541903 TTC21AQ8NDW8 1320 aa9.9□□□□□ -0.82
VPS53-205ENST00000541903 HNRNPUQ00839 825 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS53-205ENST00000541903 WDR43Q15061 677 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS53-205ENST00000541903 ESCO1Q5FWF5 840 aa9.9□□□□□ -0.82
VPS53-205ENST00000541903 NME9Q86XW9 330 aa9.9□□□□□ -0.82
VPS53-205ENST00000541903 CFAP53Q96M91 514 aa9.9□□□□□ -0.82
VPS53-205ENST00000541903 STRCP1A6NGW2 1772 aa9.9□□□□□ -0.82
VPS53-205ENST00000541903 SCAF1Q9H7N4 1312 aaKnown RBP9.89□□□□□ -0.83
VPS53-205ENST00000541903 LRRC7Q96NW7 1537 aa9.89□□□□□ -0.83
VPS53-205ENST00000541903 CADPS2Q86UW7 1296 aa9.89□□□□□ -0.83
VPS53-205ENST00000541903 COG3Q96JB2 828 aa9.89□□□□□ -0.83
VPS53-205ENST00000541903 SSH2Q76I76 1423 aa9.89□□□□□ -0.83
VPS53-205ENST00000541903 C1orf167Q5SNV9 1468 aa9.88□□□□□ -0.83
VPS53-205ENST00000541903 MST1RQ04912 1400 aa9.88□□□□□ -0.83
VPS53-205ENST00000541903 INSRP06213 1382 aa9.88□□□□□ -0.83
VPS53-205ENST00000541903 KIF1AQ12756 1690 aa9.87□□□□□ -0.83
VPS53-205ENST00000541903 MTHFSP49914 203 aa9.87□□□□□ -0.83
VPS53-205ENST00000541903 OVOS2A0A0J9YW53 1432 aa9.87□□□□□ -0.83
VPS53-205ENST00000541903 OVOS2Q6IE36 1432 aa9.87□□□□□ -0.83
VPS53-205ENST00000541903 AATKQ6ZMQ8 1374 aa9.86□□□□□ -0.83
VPS53-205ENST00000541903 RGPD8O14715 1765 aaPredicted RBP9.86□□□□□ -0.83
VPS53-205ENST00000541903 BLMP54132 1417 aaPredicted RBP9.85□□□□□ -0.83
VPS53-205ENST00000541903 PAK3O75914 559 aaPredicted RBP9.85□□□□□ -0.83
VPS53-205ENST00000541903 PSME1Q06323 249 aa9.85□□□□□ -0.83
VPS53-205ENST00000541903 ORAI2Q96SN7 254 aa9.85□□□□□ -0.83
VPS53-205ENST00000541903 ZRANB1Q9UGI0 708 aa9.85□□□□□ -0.83
VPS53-205ENST00000541903 USP31Q70CQ4 1352 aa9.85□□□□□ -0.83
VPS53-205ENST00000541903 ZBED9Q6R2W3 1325 aa9.84□□□□□ -0.83
VPS53-205ENST00000541903 SMG6Q86US8 1419 aaKnown RBP9.84□□□□□ -0.83
VPS53-205ENST00000541903 FOXO3O43524 673 aa9.83□□□□□ -0.84
VPS53-205ENST00000541903 ABTB2Q8N961 1025 aa9.83□□□□□ -0.84
VPS53-205ENST00000541903 POLKQ9UBT6 870 aa9.83□□□□□ -0.84
VPS53-205ENST00000541903 NUDCQ9Y266 331 aa9.83□□□□□ -0.84
VPS53-205ENST00000541903 CDK12Q9NYV4 1490 aaPredicted RBP9.83□□□□□ -0.84
VPS53-205ENST00000541903 PPM1GO15355 546 aaPredicted RBP9.82□□□□□ -0.84
VPS53-205ENST00000541903 NLRP6P59044 892 aa9.82□□□□□ -0.84
VPS53-205ENST00000541903 ADAMTS8Q9UP79 889 aa9.82□□□□□ -0.84
VPS53-205ENST00000541903 COL3A1P02461 1466 aaPredicted RBP9.82□□□□□ -0.84
VPS53-205ENST00000541903 PIK3C2AO00443 1686 aa9.82□□□□□ -0.84
VPS53-205ENST00000541903 NPHP3Q7Z494 1330 aa9.82□□□□□ -0.84
VPS53-205ENST00000541903 PNPLA6Q8IY17 1366 aa9.81□□□□□ -0.84
VPS53-205ENST00000541903 DIAPH1O60610 1272 aaKnown RBP9.81□□□□□ -0.84
VPS53-205ENST00000541903 XPCQ01831 940 aaPredicted RBP9.81□□□□□ -0.84
VPS53-205ENST00000541903 KRT28Q7Z3Y7 464 aa9.81□□□□□ -0.84
VPS53-205ENST00000541903 EMILIN1Q9Y6C2 1016 aa9.81□□□□□ -0.84
VPS53-205ENST00000541903 XIRP1Q702N8 1843 aaKnown RBP9.81□□□□□ -0.84
VPS53-205ENST00000541903 SHPRHQ149N8 1683 aa9.8□□□□□ -0.84
VPS53-205ENST00000541903 USP54Q70EL1 1684 aa9.8□□□□□ -0.84
VPS53-205ENST00000541903 SOX12O15370 315 aa9.8□□□□□ -0.84
VPS53-205ENST00000541903 U2AF1L5P0DN76 240 aaPredicted RBP9.8□□□□□ -0.84
VPS53-205ENST00000541903 U2AF1Q01081 240 aaKnown RBP eCLIP9.8□□□□□ -0.84
VPS53-205ENST00000541903 RRS1Q15050 365 aaKnown RBP9.8□□□□□ -0.84
VPS53-205ENST00000541903 NUTM2GQ5VZR2 741 aa9.8□□□□□ -0.84
VPS53-205ENST00000541903 SBNO1A3KN83 1393 aa9.79□□□□□ -0.84
VPS53-205ENST00000541903 U2SURPO15042 1029 aaKnown RBP9.79□□□□□ -0.84
VPS53-205ENST00000541903 FBLN1P23142 703 aa9.79□□□□□ -0.84
VPS53-205ENST00000541903 BRINP3Q76B58 766 aa9.79□□□□□ -0.84
VPS53-205ENST00000541903 SLAIN2Q9P270 581 aa9.79□□□□□ -0.84
VPS53-205ENST00000541903 LTBP4Q8N2S1 1624 aa9.78□□□□□ -0.84
VPS53-205ENST00000541903 LMOD2Q6P5Q4 547 aa9.78□□□□□ -0.84
VPS53-205ENST00000541903 CCDC146Q8IYE0 955 aa9.78□□□□□ -0.84
VPS53-205ENST00000541903 KCNH5Q8NCM2 988 aa9.78□□□□□ -0.84
VPS53-205ENST00000541903 TRPM3Q9HCF6 1732 aaPredicted RBP9.78□□□□□ -0.84
VPS53-205ENST00000541903 MAP3K19Q56UN5 1328 aa9.78□□□□□ -0.84
VPS53-205ENST00000541903 FLT4P35916 1363 aa9.77□□□□□ -0.84
VPS53-205ENST00000541903 KIF24Q5T7B8 1368 aa9.77□□□□□ -0.84
VPS53-205ENST00000541903 TNS3Q68CZ2 1445 aa9.77□□□□□ -0.85
VPS53-205ENST00000541903 AMPHP49418 695 aa9.77□□□□□ -0.85
VPS53-205ENST00000541903 RUNDC1Q96C34 613 aa9.77□□□□□ -0.85
VPS53-205ENST00000541903 PNNQ9H307 717 aaKnown RBP9.77□□□□□ -0.85
VPS53-205ENST00000541903 PXDNQ92626 1479 aa9.77□□□□□ -0.85
VPS53-205ENST00000541903 RTL1A6NKG5 1358 aa9.76□□□□□ -0.85
VPS53-205ENST00000541903 ARHGEF10O15013 1369 aa9.76□□□□□ -0.85
VPS53-205ENST00000541903 SENP3-EIF4A1A0A087X0R7 540 aa9.76□□□□□ -0.85
VPS53-205ENST00000541903 IL13P35225 146 aa9.76□□□□□ -0.85
VPS53-205ENST00000541903 NGEFQ8N5V2 710 aa9.76□□□□□ -0.85
VPS53-205ENST00000541903 USP19O94966 1318 aa9.76□□□□□ -0.85
VPS53-205ENST00000541903 MAPK8IP3Q9UPT6 1336 aa9.76□□□□□ -0.85
VPS53-205ENST00000541903 SLIT3O75094 1523 aa9.76□□□□□ -0.85
VPS53-205ENST00000541903 NEFMP07197 916 aa9.75□□□□□ -0.85
VPS53-205ENST00000541903 PDE3BQ13370 1112 aa9.75□□□□□ -0.85
VPS53-205ENST00000541903 DDX17Q92841 729 aaKnown RBP9.75□□□□□ -0.85
VPS53-205ENST00000541903 SALL2Q9Y467 1007 aaPredicted RBP9.75□□□□□ -0.85
VPS53-205ENST00000541903 MARF1Q9Y4F3 1742 aaKnown RBP9.75□□□□□ -0.85
VPS53-205ENST00000541903 NFAT5O94916 1531 aa9.75□□□□□ -0.85
VPS53-205ENST00000541903 IQSEC2Q5JU85 1478 aa9.74□□□□□ -0.85
VPS53-205ENST00000541903 PEAK1Q9H792 1746 aa9.74□□□□□ -0.85
VPS53-205ENST00000541903 APAF1O14727 1248 aa9.74□□□□□ -0.85
VPS53-205ENST00000541903 MAP2P11137 1827 aaKnown RBP9.74□□□□□ -0.85
VPS53-205ENST00000541903 SPATA31A3Q5VYP0 1347 aa9.74□□□□□ -0.85
VPS53-205ENST00000541903 ALS2Q96Q42 1657 aa9.74□□□□□ -0.85
VPS53-205ENST00000541903 ZBTB7CA1YPR0 619 aa9.73□□□□□ -0.85
VPS53-205ENST00000541903 PLEKHG5O94827 1062 aa9.73□□□□□ -0.85
VPS53-205ENST00000541903 FCHSD2O94868 740 aa9.73□□□□□ -0.85
VPS53-205ENST00000541903 GCP02774 474 aa9.73□□□□□ -0.85
VPS53-205ENST00000541903 HOXC9P31274 260 aa9.73□□□□□ -0.85
VPS53-205ENST00000541903 EIF4A2Q14240 407 aaKnown RBP9.73□□□□□ -0.85
VPS53-205ENST00000541903 HSP90AB2PQ58FF8 381 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms