RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 EZH2Q15910 746 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-212ENST00000541770 HIRIP3Q9BW71 556 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-212ENST00000541770 GPRASP1Q5JY77 1395 aa12.72□□□□□ -0.37
CLSTN3-212ENST00000541770 ANKARQ7Z5J8 1434 aa12.71□□□□□ -0.37
CLSTN3-212ENST00000541770 PRDM11Q9NQV5 511 aa12.71□□□□□ -0.37
CLSTN3-212ENST00000541770 CRYBG1Q9Y4K1 1723 aa12.71□□□□□ -0.38
CLSTN3-212ENST00000541770 THSD7AQ9UPZ6 1657 aa12.7□□□□□ -0.38
CLSTN3-212ENST00000541770 SPATA31A5Q5VU36 1347 aa12.7□□□□□ -0.38
CLSTN3-212ENST00000541770 SPATA31A7Q8IWB4 1347 aa12.7□□□□□ -0.38
CLSTN3-212ENST00000541770 MINK1Q8N4C8 1332 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-212ENST00000541770 TRIM37O94972 964 aa12.7□□□□□ -0.38
CLSTN3-212ENST00000541770 NGDNQ8NEJ9 315 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-212ENST00000541770 STRN4Q9NRL3 753 aa12.7□□□□□ -0.38
CLSTN3-212ENST00000541770 TRAK1Q9UPV9 953 aa12.7□□□□□ -0.38
CLSTN3-212ENST00000541770 PCGF6Q9BYE7 350 aa12.69□□□□□ -0.38
CLSTN3-212ENST00000541770 USP35Q9P2H5 1018 aa12.69□□□□□ -0.38
CLSTN3-212ENST00000541770 DLC1Q96QB1 1528 aa12.68□□□□□ -0.38
CLSTN3-212ENST00000541770 APBA3O96018 575 aa12.68□□□□□ -0.38
CLSTN3-212ENST00000541770 CHRNA2Q15822 529 aa12.68□□□□□ -0.38
CLSTN3-212ENST00000541770 ITSN1Q15811 1721 aa12.68□□□□□ -0.38
CLSTN3-212ENST00000541770 PHRF1Q9P1Y6 1649 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-212ENST00000541770 EIF3AQ14152 1382 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-212ENST00000541770 TULP4Q9NRJ4 1543 aa12.67□□□□□ -0.38
CLSTN3-212ENST00000541770 PRR36Q9H6K5 1346 aa12.66□□□□□ -0.38
CLSTN3-212ENST00000541770 DISP2A7MBM2 1401 aa12.66□□□□□ -0.38
CLSTN3-212ENST00000541770 YY1P25490 414 aa12.66□□□□□ -0.38
CLSTN3-212ENST00000541770 NUTM2GQ5VZR2 741 aa12.66□□□□□ -0.38
CLSTN3-212ENST00000541770 FAM196AQ6ZSG2 479 aa12.66□□□□□ -0.38
CLSTN3-212ENST00000541770 NUP188Q5SRE5 1749 aa12.65□□□□□ -0.38
CLSTN3-212ENST00000541770 SPATA31A1Q5TZJ5 1347 aa12.65□□□□□ -0.38
CLSTN3-212ENST00000541770 RREB1Q92766 1687 aa12.65□□□□□ -0.38
CLSTN3-212ENST00000541770 EVA1CP58658 441 aa12.65□□□□□ -0.38
CLSTN3-212ENST00000541770 ZC3H6P61129 1189 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-212ENST00000541770 PDE3BQ13370 1112 aa12.65□□□□□ -0.38
CLSTN3-212ENST00000541770 CAMKK2Q96RR4 588 aa12.65□□□□□ -0.38
CLSTN3-212ENST00000541770 KDM2AQ9Y2K7 1162 aa12.65□□□□□ -0.38
CLSTN3-212ENST00000541770 KIAA0232Q92628 1395 aa12.65□□□□□ -0.38
CLSTN3-212ENST00000541770 WASLO00401 505 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-212ENST00000541770 NBPF8Q3BBV2 869 aa12.64□□□□□ -0.39
CLSTN3-212ENST00000541770 NBPF14Q5TI25 921 aa12.64□□□□□ -0.39
CLSTN3-212ENST00000541770 PPP1R1BQ9UD71 204 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-212ENST00000541770 ADGRB1O14514 1584 aa12.63□□□□□ -0.39
CLSTN3-212ENST00000541770 DCAF8L1A6NGE4 600 aa12.62□□□□□ -0.39
CLSTN3-212ENST00000541770 PARD3Q8TEW0 1356 aa12.61□□□□□ -0.39
CLSTN3-212ENST00000541770 ARHGEF28Q8N1W1 1705 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-212ENST00000541770 DCAF11Q8TEB1 546 aa12.6□□□□□ -0.39
CLSTN3-212ENST00000541770 NUDT16Q96DE0 195 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-212ENST00000541770 SSH2Q76I76 1423 aa12.59□□□□□ -0.39
CLSTN3-212ENST00000541770 ATP7BP35670 1465 aa12.59□□□□□ -0.39
CLSTN3-212ENST00000541770 ZBTB7CA1YPR0 619 aa12.58□□□□□ -0.4
CLSTN3-212ENST00000541770 LARP1Q6PKG0 1096 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-212ENST00000541770 SPON1Q9HCB6 807 aa12.58□□□□□ -0.4
CLSTN3-212ENST00000541770 CAMTA1Q9Y6Y1 1673 aa12.57□□□□□ -0.4
CLSTN3-212ENST00000541770 NRKQ7Z2Y5 1582 aa12.57□□□□□ -0.4
CLSTN3-212ENST00000541770 BARGINQ6ZT62 677 aa12.57□□□□□ -0.4
CLSTN3-212ENST00000541770 TCP11L2Q8N4U5 519 aa12.57□□□□□ -0.4
CLSTN3-212ENST00000541770 ABTB2Q8N961 1025 aa12.57□□□□□ -0.4
CLSTN3-212ENST00000541770 KCNQ2O43526 872 aa12.56□□□□□ -0.4
CLSTN3-212ENST00000541770 CDK19Q9BWU1 502 aa12.56□□□□□ -0.4
CLSTN3-212ENST00000541770 PARP4Q9UKK3 1724 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-212ENST00000541770 ACEP12821 1306 aa12.56□□□□□ -0.4
CLSTN3-212ENST00000541770 TOPAZ1Q8N9V7 1692 aa12.55□□□□□ -0.4
CLSTN3-212ENST00000541770 SBF2Q86WG5 1849 aa12.55□□□□□ -0.4
CLSTN3-212ENST00000541770 LMO7Q8WWI1 1683 aa12.54□□□□□ -0.4
CLSTN3-212ENST00000541770 THRAP3Q9Y2W1 955 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-212ENST00000541770 CCDC61Q9Y6R9 512 aa12.52□□□□□ -0.41
CLSTN3-212ENST00000541770 NINLQ9Y2I6 1382 aa12.52□□□□□ -0.41
CLSTN3-212ENST00000541770 AKAP12Q02952 1782 aa12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 NLRP13Q86W25 1043 aa12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 STAC3Q96MF2 364 aa12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 CLSPNQ9HAW4 1339 aa12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 POLR3AO14802 1390 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 OVOS2A0A0G2JMS6 1433 aa12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 OVOS2A0A0J9YW53 1432 aa12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 OVOS2Q6IE36 1432 aa12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 COL5A2P05997 1499 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 LRRC37A3O60309 1634 aa12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 RGPD3A6NKT7 1758 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 RGPD4Q7Z3J3 1758 aa12.51□□□□□ -0.41
CLSTN3-212ENST00000541770 GCP02774 474 aa12.5□□□□□ -0.41
CLSTN3-212ENST00000541770 SRPK2P78362 688 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-212ENST00000541770 BCL11BQ9C0K0 894 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-212ENST00000541770 CPDO75976 1380 aa12.5□□□□□ -0.41
CLSTN3-212ENST00000541770 CASZ1Q86V15 1759 aa12.5□□□□□ -0.41
CLSTN3-212ENST00000541770 WNK3Q9BYP7 1800 aa12.5□□□□□ -0.41
CLSTN3-212ENST00000541770 PEAK1Q9H792 1746 aa12.49□□□□□ -0.41
CLSTN3-212ENST00000541770 MYOM1P52179 1685 aa12.49□□□□□ -0.41
CLSTN3-212ENST00000541770 CRB1P82279 1406 aa12.49□□□□□ -0.41
CLSTN3-212ENST00000541770 C11orf95C9JLR9 678 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-212ENST00000541770 ZBTB7AO95365 584 aa12.49□□□□□ -0.41
CLSTN3-212ENST00000541770 DDB1Q16531 1140 aa12.49□□□□□ -0.41
CLSTN3-212ENST00000541770 TOM1L2Q6ZVM7 507 aa12.49□□□□□ -0.41
CLSTN3-212ENST00000541770 SIN3AQ96ST3 1273 aa12.49□□□□□ -0.41
CLSTN3-212ENST00000541770 PPIP5K1Q6PFW1 1433 aa12.48□□□□□ -0.41
CLSTN3-212ENST00000541770 USP19O94966 1318 aa12.48□□□□□ -0.41
CLSTN3-212ENST00000541770 PLEKHG3A1L390 1219 aa12.48□□□□□ -0.41
CLSTN3-212ENST00000541770 ANO8Q9HCE9 1232 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-212ENST00000541770 ATF5Q9Y2D1 282 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-212ENST00000541770 RGPD5Q99666 1765 aa12.48□□□□□ -0.41
CLSTN3-212ENST00000541770 PDGFDQ9GZP0 370 aaPredicted RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms