RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 RGPD8O14715 1765 aaPredicted RBP12.32□□□□□ -0.44
CHD4-208ENST00000540960 ACIN1Q9UKV3 1341 aaKnown RBP12.32□□□□□ -0.44
CHD4-208ENST00000540960 COL14A1Q05707 1796 aaKnown RBP12.31□□□□□ -0.44
CHD4-208ENST00000540960 CCDC144AA2RUR9 1427 aa12.31□□□□□ -0.44
CHD4-208ENST00000540960 ATP10DQ9P241 1426 aa12.31□□□□□ -0.44
CHD4-208ENST00000540960 PELP1Q8IZL8 1130 aaKnown RBP12.31□□□□□ -0.44
CHD4-208ENST00000540960 PROM2Q8N271 834 aa12.31□□□□□ -0.44
CHD4-208ENST00000540960 CCER1Q8TC90 406 aaPredicted RBP12.31□□□□□ -0.44
CHD4-208ENST00000540960 SPATA31A1Q5TZJ5 1347 aa12.31□□□□□ -0.44
CHD4-208ENST00000540960 NEXMIFQ5QGS0 1516 aa12.31□□□□□ -0.44
CHD4-208ENST00000540960 ANKRD30AQ9BXX3 1397 aa12.3□□□□□ -0.44
CHD4-208ENST00000540960 PTF1AQ7RTS3 328 aa12.3□□□□□ -0.44
CHD4-208ENST00000540960 ARXQ96QS3 562 aa12.3□□□□□ -0.44
CHD4-208ENST00000540960 HFM1A2PYH4 1435 aa12.29□□□□□ -0.44
CHD4-208ENST00000540960 NAIPQ13075 1403 aa12.29□□□□□ -0.44
CHD4-208ENST00000540960 PDE3BQ13370 1112 aa12.28□□□□□ -0.44
CHD4-208ENST00000540960 ZNF526Q8TF50 670 aaPredicted RBP12.28□□□□□ -0.44
CHD4-208ENST00000540960 BCL11BQ9C0K0 894 aaPredicted RBP12.28□□□□□ -0.44
CHD4-208ENST00000540960 CLSPNQ9HAW4 1339 aa12.28□□□□□ -0.44
CHD4-208ENST00000540960 KIF1AQ12756 1690 aa12.28□□□□□ -0.44
CHD4-208ENST00000540960 MTFR1LQ9H019 292 aa12.27□□□□□ -0.45
CHD4-208ENST00000540960 GPBP1L1Q9HC44 474 aaPredicted RBP12.27□□□□□ -0.45
CHD4-208ENST00000540960 USP35Q9P2H5 1018 aa12.27□□□□□ -0.45
CHD4-208ENST00000540960 MAP3K5Q99683 1374 aa12.27□□□□□ -0.45
CHD4-208ENST00000540960 TECPR2O15040 1411 aa12.27□□□□□ -0.45
CHD4-208ENST00000540960 WAPLQ7Z5K2 1190 aa12.26□□□□□ -0.45
CHD4-208ENST00000540960 PRAG1Q86YV5 1406 aa12.26□□□□□ -0.45
CHD4-208ENST00000540960 FMN2Q9NZ56 1722 aa12.25□□□□□ -0.45
CHD4-208ENST00000540960 RGPD3A6NKT7 1758 aaPredicted RBP12.25□□□□□ -0.45
CHD4-208ENST00000540960 RGPD4Q7Z3J3 1758 aa12.25□□□□□ -0.45
CHD4-208ENST00000540960 SBF2Q86WG5 1849 aa12.25□□□□□ -0.45
CHD4-208ENST00000540960 PLSCR1O15162 318 aa12.25□□□□□ -0.45
CHD4-208ENST00000540960 YBX3P16989 372 aaKnown RBP eCLIP12.25□□□□□ -0.45
CHD4-208ENST00000540960 PSME1Q06323 249 aa12.25□□□□□ -0.45
CHD4-208ENST00000540960 SBNO1A3KN83 1393 aa12.24□□□□□ -0.45
CHD4-208ENST00000540960 APLP1P51693 650 aa12.24□□□□□ -0.45
CHD4-208ENST00000540960 ANKRD50Q9ULJ7 1429 aa12.23□□□□□ -0.45
CHD4-208ENST00000540960 ARHGEF10O15013 1369 aa12.23□□□□□ -0.45
CHD4-208ENST00000540960 KLHL34Q8N239 644 aa12.23□□□□□ -0.45
CHD4-208ENST00000540960 STRN4Q9NRL3 753 aa12.23□□□□□ -0.45
CHD4-208ENST00000540960 SLC15A2Q16348 729 aa12.22□□□□□ -0.45
CHD4-208ENST00000540960 NLGN2Q8NFZ4 835 aa12.22□□□□□ -0.45
CHD4-208ENST00000540960 PHF8Q9UPP1 1060 aa12.22□□□□□ -0.45
CHD4-208ENST00000540960 PLEKHH1Q9ULM0 1364 aa12.21□□□□□ -0.45
CHD4-208ENST00000540960 HTRA3P83110 453 aa12.21□□□□□ -0.45
CHD4-208ENST00000540960 CHRNA2Q15822 529 aa12.21□□□□□ -0.45
CHD4-208ENST00000540960 STK32BQ9NY57 414 aa12.21□□□□□ -0.45
CHD4-208ENST00000540960 PEAK1Q9H792 1746 aa12.2□□□□□ -0.46
CHD4-208ENST00000540960 KIF3CO14782 793 aa12.2□□□□□ -0.46
CHD4-208ENST00000540960 CRYBG1Q9Y4K1 1723 aa12.2□□□□□ -0.46
CHD4-208ENST00000540960 FAM50AQ14320 339 aaKnown RBP12.19□□□□□ -0.46
CHD4-208ENST00000540960 BARGINQ6ZT62 677 aa12.19□□□□□ -0.46
CHD4-208ENST00000540960 PRDM11Q9NQV5 511 aa12.19□□□□□ -0.46
CHD4-208ENST00000540960 WWC3Q9ULE0 1092 aa12.19□□□□□ -0.46
CHD4-208ENST00000540960 TRPM3Q9HCF6 1732 aaPredicted RBP12.19□□□□□ -0.46
CHD4-208ENST00000540960 PCNTO95613 3336 aa12.19□□□□□ -0.46
CHD4-208ENST00000540960 JMYQ8N9B5 988 aa12.18□□□□□ -0.46
CHD4-208ENST00000540960 STK26Q9P289 416 aa12.18□□□□□ -0.46
CHD4-208ENST00000540960 NRXN1Q9ULB1 1477 aa12.18□□□□□ -0.46
CHD4-208ENST00000540960 ADCY9O60503 1353 aa12.18□□□□□ -0.46
CHD4-208ENST00000540960 ALS2Q96Q42 1657 aa12.17□□□□□ -0.46
CHD4-208ENST00000540960 TXNRD1Q16881 649 aa12.17□□□□□ -0.46
CHD4-208ENST00000540960 WDR90Q96KV7 1748 aa12.17□□□□□ -0.46
CHD4-208ENST00000540960 PMFBP1Q8TBY8 1022 aa12.16□□□□□ -0.46
CHD4-208ENST00000540960 CLTCL1P53675 1640 aa12.15□□□□□ -0.46
CHD4-208ENST00000540960 GRIN3BO60391 1043 aa12.15□□□□□ -0.46
CHD4-208ENST00000540960 LARP1Q6PKG0 1096 aaKnown RBP12.15□□□□□ -0.46
CHD4-208ENST00000540960 KLRG1Q96E93 195 aa12.15□□□□□ -0.46
CHD4-208ENST00000540960 KIAA0232Q92628 1395 aa12.15□□□□□ -0.46
CHD4-208ENST00000540960 IFT172Q9UG01 1749 aa12.14□□□□□ -0.47
CHD4-208ENST00000540960 PARP4Q9UKK3 1724 aaKnown RBP12.14□□□□□ -0.47
CHD4-208ENST00000540960 TCP11L2Q8N4U5 519 aa12.13□□□□□ -0.47
CHD4-208ENST00000540960 SSH2Q76I76 1423 aa12.12□□□□□ -0.47
CHD4-208ENST00000540960 VGFO15240 615 aaPredicted RBP12.12□□□□□ -0.47
CHD4-208ENST00000540960 OVOS2A0A0G2JMS6 1433 aa12.11□□□□□ -0.47
CHD4-208ENST00000540960 OVOS2A0A0J9YW53 1432 aa12.11□□□□□ -0.47
CHD4-208ENST00000540960 OVOS2Q6IE36 1432 aa12.11□□□□□ -0.47
CHD4-208ENST00000540960 EVA1CP58658 441 aa12.11□□□□□ -0.47
CHD4-208ENST00000540960 ZC3H6P61129 1189 aaKnown RBP12.11□□□□□ -0.47
CHD4-208ENST00000540960 KIF1BO60333 1816 aa12.11□□□□□ -0.47
CHD4-208ENST00000540960 COL24A1Q17RW2 1714 aa12.11□□□□□ -0.47
CHD4-208ENST00000540960 NUP155O75694 1391 aa12.1□□□□□ -0.47
CHD4-208ENST00000540960 ITGAEP38570 1179 aa12.09□□□□□ -0.47
CHD4-208ENST00000540960 ZNF827Q17R98 1081 aa12.09□□□□□ -0.47
CHD4-208ENST00000540960 ATP7BP35670 1465 aa12.08□□□□□ -0.47
CHD4-208ENST00000540960 TMEM132EQ6IEE7 984 aa12.08□□□□□ -0.48
CHD4-208ENST00000540960 TNS2Q63HR2 1409 aa12.08□□□□□ -0.48
CHD4-208ENST00000540960 TIMELESSQ9UNS1 1208 aa12.07□□□□□ -0.48
CHD4-208ENST00000540960 LRRC37A3O60309 1634 aa12.07□□□□□ -0.48
CHD4-208ENST00000540960 PAPPAQ13219 1627 aa12.07□□□□□ -0.48
CHD4-208ENST00000540960 TOPAZ1Q8N9V7 1692 aa12.06□□□□□ -0.48
CHD4-208ENST00000540960 PPLO60437 1756 aa12.06□□□□□ -0.48
CHD4-208ENST00000540960 C11orf95C9JLR9 678 aaPredicted RBP12.06□□□□□ -0.48
CHD4-208ENST00000540960 TOMM70O94826 608 aa12.06□□□□□ -0.48
CHD4-208ENST00000540960 FAM161AQ3B820 660 aa12.06□□□□□ -0.48
CHD4-208ENST00000540960 MARCH10Q8NA82 808 aaPredicted RBP12.06□□□□□ -0.48
CHD4-208ENST00000540960 ROCK1Q13464 1354 aa12.05□□□□□ -0.48
CHD4-208ENST00000540960 DHX57Q6P158 1386 aaKnown RBP12.05□□□□□ -0.48
CHD4-208ENST00000540960 RAB3GAP2Q9H2M9 1393 aa12.05□□□□□ -0.48
CHD4-208ENST00000540960 PHRF1Q9P1Y6 1649 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms