RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 LMOD2Q6P5Q4 547 aa10.85□□□□□ -0.67
YBX3-209ENST00000540747 POGKQ9P215 609 aa10.85□□□□□ -0.67
YBX3-209ENST00000540747 CCDC9Q9Y3X0 531 aaKnown RBP10.85□□□□□ -0.67
YBX3-209ENST00000540747 GPRASP1Q5JY77 1395 aa10.85□□□□□ -0.67
YBX3-209ENST00000540747 HIRIP3Q9BW71 556 aaPredicted RBP10.84□□□□□ -0.67
YBX3-209ENST00000540747 TRAK1Q9UPV9 953 aa10.84□□□□□ -0.67
YBX3-209ENST00000540747 RAB3GAP2Q9H2M9 1393 aa10.84□□□□□ -0.67
YBX3-209ENST00000540747 MINK1Q8N4C8 1332 aaPredicted RBP10.84□□□□□ -0.67
YBX3-209ENST00000540747 PSDA5PKW4 1024 aaPredicted RBP10.83□□□□□ -0.68
YBX3-209ENST00000540747 PLEKHG5O94827 1062 aa10.83□□□□□ -0.68
YBX3-209ENST00000540747 SPATA31A1Q5TZJ5 1347 aa10.83□□□□□ -0.68
YBX3-209ENST00000540747 ARHGEF28Q8N1W1 1705 aaKnown RBP10.82□□□□□ -0.68
YBX3-209ENST00000540747 EN1Q05925 392 aaPredicted RBP10.82□□□□□ -0.68
YBX3-209ENST00000540747 PHRF1Q9P1Y6 1649 aaKnown RBP10.82□□□□□ -0.68
YBX3-209ENST00000540747 TOPAZ1Q8N9V7 1692 aa10.82□□□□□ -0.68
YBX3-209ENST00000540747 POLR3AO14802 1390 aaPredicted RBP10.81□□□□□ -0.68
YBX3-209ENST00000540747 KIAA0232Q92628 1395 aa10.81□□□□□ -0.68
YBX3-209ENST00000540747 FAM182BQ5T319 152 aa10.81□□□□□ -0.68
YBX3-209ENST00000540747 STAC3Q96MF2 364 aa10.81□□□□□ -0.68
YBX3-209ENST00000540747 CAMKK2Q96RR4 588 aa10.8□□□□□ -0.68
YBX3-209ENST00000540747 PRDM11Q9NQV5 511 aa10.8□□□□□ -0.68
YBX3-209ENST00000540747 ITSN1Q15811 1721 aa10.8□□□□□ -0.68
YBX3-209ENST00000540747 LMO7Q8WWI1 1683 aa10.79□□□□□ -0.68
YBX3-209ENST00000540747 NRKQ7Z2Y5 1582 aa10.79□□□□□ -0.68
YBX3-209ENST00000540747 A0A0G2JS52 829 aa10.79□□□□□ -0.68
YBX3-209ENST00000540747 MYT1Q01538 1121 aa10.79□□□□□ -0.68
YBX3-209ENST00000540747 NGDNQ8NEJ9 315 aaKnown RBP10.79□□□□□ -0.68
YBX3-209ENST00000540747 NUDT16Q96DE0 195 aaKnown RBP10.79□□□□□ -0.68
YBX3-209ENST00000540747 USP19O94966 1318 aa10.79□□□□□ -0.68
YBX3-209ENST00000540747 PARD3Q8TEW0 1356 aa10.78□□□□□ -0.68
YBX3-209ENST00000540747 SSH2Q76I76 1423 aa10.78□□□□□ -0.68
YBX3-209ENST00000540747 R3HDM1Q15032 1099 aaKnown RBP10.78□□□□□ -0.68
YBX3-209ENST00000540747 DCAF11Q8TEB1 546 aa10.78□□□□□ -0.68
YBX3-209ENST00000540747 RREB1Q92766 1687 aa10.78□□□□□ -0.68
YBX3-209ENST00000540747 CAMTA1Q9Y6Y1 1673 aa10.78□□□□□ -0.68
YBX3-209ENST00000540747 CPDO75976 1380 aa10.77□□□□□ -0.68
YBX3-209ENST00000540747 PLEKHG3A1L390 1219 aa10.77□□□□□ -0.69
YBX3-209ENST00000540747 CHRNA2Q15822 529 aa10.77□□□□□ -0.69
YBX3-209ENST00000540747 EZH2Q15910 746 aaKnown RBP10.77□□□□□ -0.69
YBX3-209ENST00000540747 BARGINQ6ZT62 677 aa10.77□□□□□ -0.69
YBX3-209ENST00000540747 PAK3O75914 559 aaPredicted RBP10.76□□□□□ -0.69
YBX3-209ENST00000540747 FAM196AQ6ZSG2 479 aa10.76□□□□□ -0.69
YBX3-209ENST00000540747 KDM2AQ9Y2K7 1162 aa10.76□□□□□ -0.69
YBX3-209ENST00000540747 NUP188Q5SRE5 1749 aa10.75□□□□□ -0.69
YBX3-209ENST00000540747 TRIM37O94972 964 aa10.75□□□□□ -0.69
YBX3-209ENST00000540747 NBPF8Q3BBV2 869 aa10.75□□□□□ -0.69
YBX3-209ENST00000540747 CDK19Q9BWU1 502 aa10.75□□□□□ -0.69
YBX3-209ENST00000540747 ACEP12821 1306 aa10.75□□□□□ -0.69
YBX3-209ENST00000540747 KIAA1210Q9ULL0 1709 aa10.75□□□□□ -0.69
YBX3-209ENST00000540747 ZC3H6P61129 1189 aaKnown RBP10.74□□□□□ -0.69
YBX3-209ENST00000540747 CCDC61Q9Y6R9 512 aa10.74□□□□□ -0.69
YBX3-209ENST00000540747 PEAK1Q9H792 1746 aa10.73□□□□□ -0.69
YBX3-209ENST00000540747 LARP1Q6PKG0 1096 aaKnown RBP10.73□□□□□ -0.69
YBX3-209ENST00000540747 STRN4Q9NRL3 753 aa10.73□□□□□ -0.69
YBX3-209ENST00000540747 COL5A2P05997 1499 aaPredicted RBP10.73□□□□□ -0.69
YBX3-209ENST00000540747 PARP4Q9UKK3 1724 aaKnown RBP10.72□□□□□ -0.69
YBX3-209ENST00000540747 APBA3O96018 575 aa10.72□□□□□ -0.69
YBX3-209ENST00000540747 NUTM2GQ5VZR2 741 aa10.72□□□□□ -0.69
YBX3-209ENST00000540747 TCP11L2Q8N4U5 519 aa10.72□□□□□ -0.69
YBX3-209ENST00000540747 BRD4O60885 1362 aaPredicted RBP10.71□□□□□ -0.69
YBX3-209ENST00000540747 SLIT3O75094 1523 aa10.71□□□□□ -0.69
YBX3-209ENST00000540747 THRAP3Q9Y2W1 955 aaKnown RBP10.71□□□□□ -0.69
YBX3-209ENST00000540747 RGPD3A6NKT7 1758 aaPredicted RBP10.7□□□□□ -0.7
YBX3-209ENST00000540747 RGPD4Q7Z3J3 1758 aa10.7□□□□□ -0.7
YBX3-209ENST00000540747 PPIP5K1Q6PFW1 1433 aa10.69□□□□□ -0.7
YBX3-209ENST00000540747 AATKQ6ZMQ8 1374 aa10.69□□□□□ -0.7
YBX3-209ENST00000540747 GCP02774 474 aa10.69□□□□□ -0.7
YBX3-209ENST00000540747 NBPF1Q3BBV0 1214 aa10.69□□□□□ -0.7
YBX3-209ENST00000540747 ABTB2Q8N961 1025 aa10.69□□□□□ -0.7
YBX3-209ENST00000540747 USP35Q9P2H5 1018 aa10.69□□□□□ -0.7
YBX3-209ENST00000540747 LRRC37A3O60309 1634 aa10.69□□□□□ -0.7
YBX3-209ENST00000540747 BCL9O00512 1426 aa10.68□□□□□ -0.7
YBX3-209ENST00000540747 USP6P35125 1406 aa10.68□□□□□ -0.7
YBX3-209ENST00000540747 CRB1P82279 1406 aa10.68□□□□□ -0.7
YBX3-209ENST00000540747 COL18A1P39060 1754 aa10.68□□□□□ -0.7
YBX3-209ENST00000540747 PDE3BQ13370 1112 aa10.68□□□□□ -0.7
YBX3-209ENST00000540747 OVOS2A0A0G2JMS6 1433 aa10.67□□□□□ -0.7
YBX3-209ENST00000540747 OVOS2A0A0J9YW53 1432 aa10.67□□□□□ -0.7
YBX3-209ENST00000540747 OVOS2Q6IE36 1432 aa10.67□□□□□ -0.7
YBX3-209ENST00000540747 EVA1CP58658 441 aa10.67□□□□□ -0.7
YBX3-209ENST00000540747 NLRP13Q86W25 1043 aa10.67□□□□□ -0.7
YBX3-209ENST00000540747 PIK3C2AO00443 1686 aa10.66□□□□□ -0.7
YBX3-209ENST00000540747 CENPJQ9HC77 1338 aaPredicted RBP10.66□□□□□ -0.7
YBX3-209ENST00000540747 C11orf95C9JLR9 678 aaPredicted RBP10.66□□□□□ -0.7
YBX3-209ENST00000540747 CASZ1Q86V15 1759 aa10.66□□□□□ -0.7
YBX3-209ENST00000540747 NINLQ9Y2I6 1382 aa10.65□□□□□ -0.7
YBX3-209ENST00000540747 SBF2Q86WG5 1849 aa10.65□□□□□ -0.7
YBX3-209ENST00000540747 PLSCR1O15162 318 aa10.65□□□□□ -0.7
YBX3-209ENST00000540747 NBPF14Q5TI25 921 aa10.65□□□□□ -0.7
YBX3-209ENST00000540747 ANO8Q9HCE9 1232 aaPredicted RBP10.65□□□□□ -0.7
YBX3-209ENST00000540747 CABP2Q9NPB3 220 aa10.65□□□□□ -0.7
YBX3-209ENST00000540747 WNK3Q9BYP7 1800 aa10.65□□□□□ -0.71
YBX3-209ENST00000540747 QRICH2Q9H0J4 1663 aa10.64□□□□□ -0.71
YBX3-209ENST00000540747 KCNQ2O43526 872 aa10.64□□□□□ -0.71
YBX3-209ENST00000540747 PTF1AQ7RTS3 328 aa10.64□□□□□ -0.71
YBX3-209ENST00000540747 CPSF1Q10570 1443 aaKnown RBP10.64□□□□□ -0.71
YBX3-209ENST00000540747 WDR17Q8IZU2 1322 aa10.63□□□□□ -0.71
YBX3-209ENST00000540747 SRPK2P78362 688 aaKnown RBP10.63□□□□□ -0.71
YBX3-209ENST00000540747 PROM2Q8N271 834 aa10.63□□□□□ -0.71
YBX3-209ENST00000540747 SPON1Q9HCB6 807 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms