RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 USP21Q9UK80 565 aa21.37■■□□□ 1.01
UBE3B-212ENST00000540230 BCL9LQ86UU0 1499 aa21.36■■□□□ 1.01
UBE3B-212ENST00000540230 HAP1P54257 671 aaPredicted RBP21.35■■□□□ 1.01
UBE3B-212ENST00000540230 QTRT2Q9H974 415 aaKnown RBP21.35■■□□□ 1.01
UBE3B-212ENST00000540230 TIMELESSQ9UNS1 1208 aa21.35■■□□□ 1.01
UBE3B-212ENST00000540230 SLIT2O94813 1529 aa21.35■■□□□ 1.01
UBE3B-212ENST00000540230 PHRF1Q9P1Y6 1649 aaKnown RBP21.34■■□□□ 1.01
UBE3B-212ENST00000540230 PLCH1Q4KWH8 1693 aa21.34■■□□□ 1.01
UBE3B-212ENST00000540230 ST20-MTHFSA0A0A6YYL1 179 aa21.34■■□□□ 1.01
UBE3B-212ENST00000540230 RXRBP28702 533 aa21.34■■□□□ 1.01
UBE3B-212ENST00000540230 NUTM2GQ5VZR2 741 aa21.34■■□□□ 1.01
UBE3B-212ENST00000540230 TESK2Q96S53 571 aa21.33■■□□□ 1
UBE3B-212ENST00000540230 ATRNO75882 1429 aa21.33■■□□□ 1
UBE3B-212ENST00000540230 USP6P35125 1406 aa21.33■■□□□ 1
UBE3B-212ENST00000540230 AKAP12Q02952 1782 aa21.33■■□□□ 1
UBE3B-212ENST00000540230 ATAD2Q6PL18 1390 aa21.32■■□□□ 1
UBE3B-212ENST00000540230 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.32■■□□□ 1
UBE3B-212ENST00000540230 USP47Q96K76 1375 aa21.31■■□□□ 1
UBE3B-212ENST00000540230 SSH2Q76I76 1423 aa21.3■■□□□ 1
UBE3B-212ENST00000540230 TRPC5Q9UL62 973 aaPredicted RBP21.29■■□□□ 1
UBE3B-212ENST00000540230 RGS12O14924 1447 aa21.29■■□□□ 1
UBE3B-212ENST00000540230 FAM83GA6ND36 823 aa21.29■■□□□ 1
UBE3B-212ENST00000540230 RBM6P78332 1123 aaKnown RBP21.29■■□□□ 1
UBE3B-212ENST00000540230 CDK12Q9NYV4 1490 aaPredicted RBP21.28■■□□□ 1
UBE3B-212ENST00000540230 NWD2Q9ULI1 1742 aa21.28■■□□□ 1
UBE3B-212ENST00000540230 NRKQ7Z2Y5 1582 aa21.28■■□□□ 1
UBE3B-212ENST00000540230 ABTB2Q8N961 1025 aa21.28■■□□□ 1
UBE3B-212ENST00000540230 PIK3C2AO00443 1686 aa21.28■■□□□ 1
UBE3B-212ENST00000540230 CPSF1Q10570 1443 aaKnown RBP21.27■■□□□ 1
UBE3B-212ENST00000540230 CD163L1Q9NR16 1453 aa21.27■■□□□ 1
UBE3B-212ENST00000540230 NRAPQ86VF7 1730 aa21.26■□□□□ 0.99
UBE3B-212ENST00000540230 UNC5CLQ8IV45 518 aa21.26■□□□□ 0.99
UBE3B-212ENST00000540230 COL14A1Q05707 1796 aaKnown RBP21.26■□□□□ 0.99
UBE3B-212ENST00000540230 MON2Q7Z3U7 1717 aa21.26■□□□□ 0.99
UBE3B-212ENST00000540230 BRD4O60885 1362 aaPredicted RBP21.25■□□□□ 0.99
UBE3B-212ENST00000540230 USP19O94966 1318 aa21.25■□□□□ 0.99
UBE3B-212ENST00000540230 GLI3P10071 1580 aa21.25■□□□□ 0.99
UBE3B-212ENST00000540230 KIAA0232Q92628 1395 aa21.23■□□□□ 0.99
UBE3B-212ENST00000540230 SLC12A5Q9H2X9 1139 aa21.23■□□□□ 0.99
UBE3B-212ENST00000540230 TTC21BQ7Z4L5 1316 aa21.22■□□□□ 0.99
UBE3B-212ENST00000540230 ZC3H6P61129 1189 aaKnown RBP21.22■□□□□ 0.99
UBE3B-212ENST00000540230 TMC1Q8TDI8 760 aa21.22■□□□□ 0.99
UBE3B-212ENST00000540230 KTN1Q86UP2 1357 aaKnown RBP21.22■□□□□ 0.99
UBE3B-212ENST00000540230 GJD4Q96KN9 370 aaPredicted RBP21.21■□□□□ 0.99
UBE3B-212ENST00000540230 ZNF692Q9BU19 519 aaPredicted RBP21.21■□□□□ 0.99
UBE3B-212ENST00000540230 BTG4Q9NY30 223 aa21.21■□□□□ 0.99
UBE3B-212ENST00000540230 CHRNA2Q15822 529 aa21.2■□□□□ 0.98
UBE3B-212ENST00000540230 NLRP13Q86W25 1043 aa21.2■□□□□ 0.98
UBE3B-212ENST00000540230 PRDM11Q9NQV5 511 aa21.2■□□□□ 0.98
UBE3B-212ENST00000540230 SLIT3O75094 1523 aa21.2■□□□□ 0.98
UBE3B-212ENST00000540230 PUS7Q96PZ0 661 aaKnown RBP21.19■□□□□ 0.98
UBE3B-212ENST00000540230 NLRP6P59044 892 aa21.19■□□□□ 0.98
UBE3B-212ENST00000540230 A0A1W2PP64 1363 aa21.18■□□□□ 0.98
UBE3B-212ENST00000540230 GCP02774 474 aa21.18■□□□□ 0.98
UBE3B-212ENST00000540230 VPS72Q15906 364 aa21.18■□□□□ 0.98
UBE3B-212ENST00000540230 LMO7Q8WWI1 1683 aa21.16■□□□□ 0.98
UBE3B-212ENST00000540230 TTC21AQ8NDW8 1320 aa21.16■□□□□ 0.98
UBE3B-212ENST00000540230 TMF1P82094 1093 aa21.15■□□□□ 0.98
UBE3B-212ENST00000540230 ZRANB1Q9UGI0 708 aa21.15■□□□□ 0.98
UBE3B-212ENST00000540230 CPDO75976 1380 aa21.15■□□□□ 0.98
UBE3B-212ENST00000540230 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.14■□□□□ 0.98
UBE3B-212ENST00000540230 CAMTA1Q9Y6Y1 1673 aa21.14■□□□□ 0.97
UBE3B-212ENST00000540230 EP400Q96L91 3159 aa21.14■□□□□ 0.97
UBE3B-212ENST00000540230 SLC24A1O60721 1099 aa21.14■□□□□ 0.97
UBE3B-212ENST00000540230 HDGFL2Q7Z4V5 671 aaPredicted RBP21.14■□□□□ 0.97
UBE3B-212ENST00000540230 CCDC9Q9Y3X0 531 aaKnown RBP21.14■□□□□ 0.97
UBE3B-212ENST00000540230 EDC4Q6P2E9 1401 aaKnown RBP21.13■□□□□ 0.97
UBE3B-212ENST00000540230 USP54Q70EL1 1684 aa21.12■□□□□ 0.97
UBE3B-212ENST00000540230 BRWD3Q6RI45 1802 aa21.12■□□□□ 0.97
UBE3B-212ENST00000540230 NME9Q86XW9 330 aa21.12■□□□□ 0.97
UBE3B-212ENST00000540230 NINLQ9Y2I6 1382 aa21.12■□□□□ 0.97
UBE3B-212ENST00000540230 MYOM1P52179 1685 aa21.12■□□□□ 0.97
UBE3B-212ENST00000540230 TERF2IPQ9NYB0 399 aa21.11■□□□□ 0.97
UBE3B-212ENST00000540230 NFAT5O94916 1531 aa21.1■□□□□ 0.97
UBE3B-212ENST00000540230 SOX12O15370 315 aa21.1■□□□□ 0.97
UBE3B-212ENST00000540230 UPF1Q92900 1129 aaKnown RBP eCLIP21.1■□□□□ 0.97
UBE3B-212ENST00000540230 COL18A1P39060 1754 aa21.1■□□□□ 0.97
UBE3B-212ENST00000540230 ZBTB7CA1YPR0 619 aa21.09■□□□□ 0.97
UBE3B-212ENST00000540230 STRN4Q9NRL3 753 aa21.09■□□□□ 0.97
UBE3B-212ENST00000540230 USP31Q70CQ4 1352 aa21.09■□□□□ 0.97
UBE3B-212ENST00000540230 SPATA31A5Q5VU36 1347 aa21.09■□□□□ 0.97
UBE3B-212ENST00000540230 SPATA31A7Q8IWB4 1347 aa21.09■□□□□ 0.97
UBE3B-212ENST00000540230 HSPA5P11021 654 aaKnown RBP21.09■□□□□ 0.97
UBE3B-212ENST00000540230 ANKRD36BQ8N2N9 1353 aa21.08■□□□□ 0.97
UBE3B-212ENST00000540230 FAM98CQ17RN3 349 aaKnown RBP21.07■□□□□ 0.96
UBE3B-212ENST00000540230 SEPT12Q8IYM1 358 aa21.07■□□□□ 0.96
UBE3B-212ENST00000540230 COL5A2P05997 1499 aaPredicted RBP21.07■□□□□ 0.96
UBE3B-212ENST00000540230 ONECUT3O60422 494 aaPredicted RBP21.06■□□□□ 0.96
UBE3B-212ENST00000540230 EIF4G2P78344 907 aaKnown RBP eCLIP21.06■□□□□ 0.96
UBE3B-212ENST00000540230 OVOS2A0A0J9YW53 1432 aa21.06■□□□□ 0.96
UBE3B-212ENST00000540230 OVOS2Q6IE36 1432 aa21.06■□□□□ 0.96
UBE3B-212ENST00000540230 RGPD5Q99666 1765 aa21.05■□□□□ 0.96
UBE3B-212ENST00000540230 AATKQ6ZMQ8 1374 aa21.05■□□□□ 0.96
UBE3B-212ENST00000540230 SPATA31A1Q5TZJ5 1347 aa21.05■□□□□ 0.96
UBE3B-212ENST00000540230 LARP1Q6PKG0 1096 aaKnown RBP21.04■□□□□ 0.96
UBE3B-212ENST00000540230 ARHGEF25Q86VW2 580 aa21.04■□□□□ 0.96
UBE3B-212ENST00000540230 KCNH5Q8NCM2 988 aa21.04■□□□□ 0.96
UBE3B-212ENST00000540230 THSD7AQ9UPZ6 1657 aa21.04■□□□□ 0.96
UBE3B-212ENST00000540230 CDCA8Q53HL2 280 aa21.04■□□□□ 0.96
UBE3B-212ENST00000540230 AXIN2Q9Y2T1 843 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms