RNA–Protein interactions for RNA: ENST00000540009.1

ZNF664-208, Transcript of zinc finger protein 664, human

TSL 3

Gene ZNF664, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF664-208	ENST00000540009	ABCA3	Q99758	1704 aa		32.06	■■■□□ 2.72
ZNF664-208	ENST00000540009	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.05	■■■□□ 2.72
ZNF664-208	ENST00000540009	ATAD2	Q6PL18	1390 aa		32.05	■■■□□ 2.72
ZNF664-208	ENST00000540009	USP21	Q9UK80	565 aa		32.04	■■■□□ 2.72
ZNF664-208	ENST00000540009	TESK2	Q96S53	571 aa		32.03	■■■□□ 2.72
ZNF664-208	ENST00000540009	QTRT2	Q9H974	415 aa	Known RBP	32.02	■■■□□ 2.72
ZNF664-208	ENST00000540009	USP47	Q96K76	1375 aa		32.02	■■■□□ 2.72
ZNF664-208	ENST00000540009	NUTM2G	Q5VZR2	741 aa		32	■■■□□ 2.71
ZNF664-208	ENST00000540009	RXRB	P28702	533 aa		31.99	■■■□□ 2.71
ZNF664-208	ENST00000540009	USP6	P35125	1406 aa		31.98	■■■□□ 2.71
ZNF664-208	ENST00000540009	ABTB2	Q8N961	1025 aa		31.97	■■■□□ 2.71
ZNF664-208	ENST00000540009	CRYBG1	Q9Y4K1	1723 aa		31.97	■■■□□ 2.71
ZNF664-208	ENST00000540009	BCL9L	Q86UU0	1499 aa		31.97	■■■□□ 2.71
ZNF664-208	ENST00000540009	BRD4	O60885	1362 aa	Predicted RBP	31.94	■■■□□ 2.7
ZNF664-208	ENST00000540009	TRPC5	Q9UL62	973 aa	Predicted RBP	31.94	■■■□□ 2.7
ZNF664-208	ENST00000540009	SLIT2	O94813	1529 aa		31.94	■■■□□ 2.7
ZNF664-208	ENST00000540009	ZNF692	Q9BU19	519 aa	Predicted RBP	31.93	■■■□□ 2.7
ZNF664-208	ENST00000540009	SLC24A1	O60721	1099 aa		31.92	■■■□□ 2.7
ZNF664-208	ENST00000540009	RBM6	P78332	1123 aa	Known RBP	31.92	■■■□□ 2.7
ZNF664-208	ENST00000540009	TMC1	Q8TDI8	760 aa		31.92	■■■□□ 2.7
ZNF664-208	ENST00000540009	AKAP12	Q02952	1782 aa		31.91	■■■□□ 2.7
ZNF664-208	ENST00000540009	FAM83G	A6ND36	823 aa		31.91	■■■□□ 2.7
ZNF664-208	ENST00000540009	PUS7	Q96PZ0	661 aa	Known RBP	31.91	■■■□□ 2.7
ZNF664-208	ENST00000540009	ATRN	O75882	1429 aa		31.91	■■■□□ 2.7
ZNF664-208	ENST00000540009	CPSF1	Q10570	1443 aa	Known RBP	31.91	■■■□□ 2.7
ZNF664-208	ENST00000540009	SSH2	Q76I76	1423 aa		31.91	■■■□□ 2.7
ZNF664-208	ENST00000540009	PHRF1	Q9P1Y6	1649 aa	Known RBP	31.89	■■■□□ 2.7
ZNF664-208	ENST00000540009	UNC5CL	Q8IV45	518 aa		31.89	■■■□□ 2.7
ZNF664-208	ENST00000540009	SLC12A5	Q9H2X9	1139 aa		31.88	■■■□□ 2.69
ZNF664-208	ENST00000540009	PLCH1	Q4KWH8	1693 aa		31.88	■■■□□ 2.69
ZNF664-208	ENST00000540009	KTN1	Q86UP2	1357 aa	Known RBP	31.87	■■■□□ 2.69
ZNF664-208	ENST00000540009	NLRP13	Q86W25	1043 aa		31.87	■■■□□ 2.69
ZNF664-208	ENST00000540009	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	31.86	■■■□□ 2.69
ZNF664-208	ENST00000540009	TTC21B	Q7Z4L5	1316 aa		31.86	■■■□□ 2.69
ZNF664-208	ENST00000540009	TMF1	P82094	1093 aa		31.86	■■■□□ 2.69
ZNF664-208	ENST00000540009	CD163L1	Q9NR16	1453 aa		31.85	■■■□□ 2.69
ZNF664-208	ENST00000540009	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.84	■■■□□ 2.69
ZNF664-208	ENST00000540009	USP19	O94966	1318 aa		31.84	■■■□□ 2.69
ZNF664-208	ENST00000540009	NLRP6	P59044	892 aa		31.83	■■■□□ 2.69
ZNF664-208	ENST00000540009	ZC3H6	P61129	1189 aa	Known RBP	31.83	■■■□□ 2.69
ZNF664-208	ENST00000540009	PRDM11	Q9NQV5	511 aa		31.83	■■■□□ 2.69
ZNF664-208	ENST00000540009	COL14A1	Q05707	1796 aa	Known RBP	31.83	■■■□□ 2.69
ZNF664-208	ENST00000540009	NWD2	Q9ULI1	1742 aa		31.83	■■■□□ 2.69
ZNF664-208	ENST00000540009	KIAA0232	Q92628	1395 aa		31.82	■■■□□ 2.69
ZNF664-208	ENST00000540009	NRK	Q7Z2Y5	1582 aa		31.82	■■■□□ 2.68
ZNF664-208	ENST00000540009	BTG4	Q9NY30	223 aa		31.82	■■■□□ 2.68
ZNF664-208	ENST00000540009	MON2	Q7Z3U7	1717 aa		31.82	■■■□□ 2.68
ZNF664-208	ENST00000540009	PIK3C2A	O00443	1686 aa		31.82	■■■□□ 2.68
ZNF664-208	ENST00000540009	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	31.81	■■■□□ 2.68
ZNF664-208	ENST00000540009	GJD4	Q96KN9	370 aa	Predicted RBP	31.81	■■■□□ 2.68
ZNF664-208	ENST00000540009	RGS12	O14924	1447 aa		31.81	■■■□□ 2.68
ZNF664-208	ENST00000540009	TTC21A	Q8NDW8	1320 aa		31.79	■■■□□ 2.68
ZNF664-208	ENST00000540009	TERF2IP	Q9NYB0	399 aa		31.79	■■■□□ 2.68
ZNF664-208	ENST00000540009	GC	P02774	474 aa		31.78	■■■□□ 2.68
ZNF664-208	ENST00000540009	CHRNA2	Q15822	529 aa		31.78	■■■□□ 2.68
ZNF664-208	ENST00000540009		A0A1W2PP64	1363 aa		31.78	■■■□□ 2.68
ZNF664-208	ENST00000540009	NINL	Q9Y2I6	1382 aa		31.77	■■■□□ 2.68
ZNF664-208	ENST00000540009	NRAP	Q86VF7	1730 aa		31.76	■■■□□ 2.67
ZNF664-208	ENST00000540009	VPS72	Q15906	364 aa		31.76	■■■□□ 2.67
ZNF664-208	ENST00000540009	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	31.76	■■■□□ 2.67
ZNF664-208	ENST00000540009	EIF4G2	P78344	907 aa	Known RBP eCLIP	31.74	■■■□□ 2.67
ZNF664-208	ENST00000540009	CDCA8	Q53HL2	280 aa		31.74	■■■□□ 2.67
ZNF664-208	ENST00000540009	CCDC9	Q9Y3X0	531 aa	Known RBP	31.74	■■■□□ 2.67
ZNF664-208	ENST00000540009	SLIT3	O75094	1523 aa		31.74	■■■□□ 2.67
ZNF664-208	ENST00000540009	GLI3	P10071	1580 aa		31.73	■■■□□ 2.67
ZNF664-208	ENST00000540009	CPD	O75976	1380 aa		31.72	■■■□□ 2.67
ZNF664-208	ENST00000540009	EDC4	Q6P2E9	1401 aa	Known RBP	31.72	■■■□□ 2.67
ZNF664-208	ENST00000540009	HSPA5	P11021	654 aa	Known RBP	31.71	■■■□□ 2.67
ZNF664-208	ENST00000540009	ZRANB1	Q9UGI0	708 aa		31.7	■■■□□ 2.67
ZNF664-208	ENST00000540009	NME9	Q86XW9	330 aa		31.69	■■■□□ 2.66
ZNF664-208	ENST00000540009	ZBTB7C	A1YPR0	619 aa		31.67	■■■□□ 2.66
ZNF664-208	ENST00000540009	ANKRD36B	Q8N2N9	1353 aa		31.67	■■■□□ 2.66
ZNF664-208	ENST00000540009	SOX12	O15370	315 aa		31.66	■■■□□ 2.66
ZNF664-208	ENST00000540009	USP31	Q70CQ4	1352 aa		31.66	■■■□□ 2.66
ZNF664-208	ENST00000540009	KCNH5	Q8NCM2	988 aa		31.65	■■■□□ 2.66
ZNF664-208	ENST00000540009	STRN4	Q9NRL3	753 aa		31.65	■■■□□ 2.66
ZNF664-208	ENST00000540009	LMO7	Q8WWI1	1683 aa		31.64	■■■□□ 2.65
ZNF664-208	ENST00000540009	CAMTA1	Q9Y6Y1	1673 aa		31.64	■■■□□ 2.65
ZNF664-208	ENST00000540009	SPATA31A5	Q5VU36	1347 aa		31.61	■■■□□ 2.65
ZNF664-208	ENST00000540009	SPATA31A7	Q8IWB4	1347 aa		31.61	■■■□□ 2.65
ZNF664-208	ENST00000540009	EVA1C	P58658	441 aa		31.61	■■■□□ 2.65
ZNF664-208	ENST00000540009	USP54	Q70EL1	1684 aa		31.6	■■■□□ 2.65
ZNF664-208	ENST00000540009	ARHGEF25	Q86VW2	580 aa		31.59	■■■□□ 2.65
ZNF664-208	ENST00000540009	POLR3GL	Q9BT43	218 aa		31.59	■■■□□ 2.65
ZNF664-208	ENST00000540009	AATK	Q6ZMQ8	1374 aa		31.58	■■■□□ 2.65
ZNF664-208	ENST00000540009	MYOM1	P52179	1685 aa		31.58	■■■□□ 2.65
ZNF664-208	ENST00000540009	ONECUT3	O60422	494 aa	Predicted RBP	31.58	■■■□□ 2.65
ZNF664-208	ENST00000540009	SEPT12	Q8IYM1	358 aa		31.58	■■■□□ 2.65
ZNF664-208	ENST00000540009	NFAT5	O94916	1531 aa		31.58	■■■□□ 2.65
ZNF664-208	ENST00000540009	FAM98C	Q17RN3	349 aa	Known RBP	31.57	■■■□□ 2.64
ZNF664-208	ENST00000540009	UPF1	Q92900	1129 aa	Known RBP eCLIP	31.56	■■■□□ 2.64
ZNF664-208	ENST00000540009	OVOS2	A0A0J9YW53	1432 aa		31.56	■■■□□ 2.64
ZNF664-208	ENST00000540009	OVOS2	Q6IE36	1432 aa		31.56	■■■□□ 2.64
ZNF664-208	ENST00000540009	SPATA31A1	Q5TZJ5	1347 aa		31.55	■■■□□ 2.64
ZNF664-208	ENST00000540009	LARP1	Q6PKG0	1096 aa	Known RBP	31.55	■■■□□ 2.64
ZNF664-208	ENST00000540009	COL5A2	P05997	1499 aa	Predicted RBP	31.54	■■■□□ 2.64
ZNF664-208	ENST00000540009	COL18A1	P39060	1754 aa		31.54	■■■□□ 2.64
ZNF664-208	ENST00000540009		A0A0G2JS52	829 aa		31.54	■■■□□ 2.64
ZNF664-208	ENST00000540009	MYT1	Q01538	1121 aa		31.54	■■■□□ 2.64
ZNF664-208	ENST00000540009	AXIN2	Q9Y2T1	843 aa		31.53	■■■□□ 2.64

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms