RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 NGLY1Q96IV0 654 aa15.16■□□□□ 0.02
HMGA2-209ENST00000539662 AKAP12Q02952 1782 aa15.15■□□□□ 0.02
HMGA2-209ENST00000539662 ARHGEF10O15013 1369 aa15.14■□□□□ 0.01
HMGA2-209ENST00000539662 CD163L1Q9NR16 1453 aa15.14■□□□□ 0.01
HMGA2-209ENST00000539662 SSH2Q76I76 1423 aa15.13■□□□□ 0.01
HMGA2-209ENST00000539662 BCL9LQ86UU0 1499 aa15.13■□□□□ 0.01
HMGA2-209ENST00000539662 USP6P35125 1406 aa15.12■□□□□ 0.01
HMGA2-209ENST00000539662 ZNF772Q68DY9 489 aaPredicted RBP15.12■□□□□ 0.01
HMGA2-209ENST00000539662 FNBP4Q8N3X1 1017 aaPredicted RBP15.12■□□□□ 0.01
HMGA2-209ENST00000539662 SLC12A5Q9H2X9 1139 aa15.12■□□□□ 0.01
HMGA2-209ENST00000539662 PHRF1Q9P1Y6 1649 aaKnown RBP15.12■□□□□ 0.01
HMGA2-209ENST00000539662 QTRT2Q9H974 415 aaKnown RBP15.11■□□□□ 0.01
HMGA2-209ENST00000539662 USP21Q9UK80 565 aa15.11■□□□□ 0.01
HMGA2-209ENST00000539662 PLCH1Q4KWH8 1693 aa15.11■□□□□ 0.01
HMGA2-209ENST00000539662 NRKQ7Z2Y5 1582 aa15.11■□□□□ 0.01
HMGA2-209ENST00000539662 ATAD2Q6PL18 1390 aa15.11■□□□□ 0.01
HMGA2-209ENST00000539662 CPSF1Q10570 1443 aaKnown RBP15.1■□□□□ 0.01
HMGA2-209ENST00000539662 PIK3C2AO00443 1686 aa15.1■□□□□ 0.01
HMGA2-209ENST00000539662 FAM83GA6ND36 823 aa15.1■□□□□ 0.01
HMGA2-209ENST00000539662 HAP1P54257 671 aaPredicted RBP15.1■□□□□ 0.01
HMGA2-209ENST00000539662 ABTB2Q8N961 1025 aa15.1■□□□□ 0.01
HMGA2-209ENST00000539662 TMC1Q8TDI8 760 aa15.1■□□□□ 0.01
HMGA2-209ENST00000539662 SLIT2O94813 1529 aa15.1■□□□□ 0.01
HMGA2-209ENST00000539662 MON2Q7Z3U7 1717 aa15.09■□□□□ 0.01
HMGA2-209ENST00000539662 SOCS7O14512 581 aa15.08■□□□□ 0
HMGA2-209ENST00000539662 ZRANB1Q9UGI0 708 aa15.08■□□□□ 0
HMGA2-209ENST00000539662 TTC21BQ7Z4L5 1316 aa15.07■□□□□ 0
HMGA2-209ENST00000539662 KTN1Q86UP2 1357 aaKnown RBP15.07■□□□□ 0
HMGA2-209ENST00000539662 ATRNO75882 1429 aa15.07■□□□□ 0
HMGA2-209ENST00000539662 NRAPQ86VF7 1730 aa15.06■□□□□ 0
HMGA2-209ENST00000539662 RXRBP28702 533 aa15.06■□□□□ 0
HMGA2-209ENST00000539662 ZC3H6P61129 1189 aaKnown RBP15.06■□□□□ 0
HMGA2-209ENST00000539662 CHRNA2Q15822 529 aa15.06■□□□□ 0
HMGA2-209ENST00000539662 A0A1W2PP64 1363 aa15.06■□□□□ 0
HMGA2-209ENST00000539662 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.06■□□□□ 0
HMGA2-209ENST00000539662 HSPA5P11021 654 aaKnown RBP15.05■□□□□ -0
HMGA2-209ENST00000539662 USP19O94966 1318 aa15.05■□□□□ -0
HMGA2-209ENST00000539662 KIAA0232Q92628 1395 aa15.05■□□□□ -0
HMGA2-209ENST00000539662 COL14A1Q05707 1796 aaKnown RBP15.04■□□□□ -0
HMGA2-209ENST00000539662 NWD2Q9ULI1 1742 aa15.04■□□□□ -0
HMGA2-209ENST00000539662 GLI3P10071 1580 aa15.04■□□□□ -0
HMGA2-209ENST00000539662 RGS12O14924 1447 aa15.04■□□□□ -0
HMGA2-209ENST00000539662 NLRP6P59044 892 aa15.04■□□□□ -0
HMGA2-209ENST00000539662 TMF1P82094 1093 aa15.04■□□□□ -0
HMGA2-209ENST00000539662 UNC5CLQ8IV45 518 aa15.04■□□□□ -0
HMGA2-209ENST00000539662 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.04■□□□□ -03e-8■■□□□ 13.7
HMGA2-209ENST00000539662 PUS7Q96PZ0 661 aaKnown RBP15.04■□□□□ -0
HMGA2-209ENST00000539662 ZNF692Q9BU19 519 aaPredicted RBP15.04■□□□□ -0
HMGA2-209ENST00000539662 MYOM1P52179 1685 aa15.03■□□□□ -0
HMGA2-209ENST00000539662 RBM6P78332 1123 aaKnown RBP15.03■□□□□ -0
HMGA2-209ENST00000539662 NME9Q86XW9 330 aa15.03■□□□□ -0
HMGA2-209ENST00000539662 BTG4Q9NY30 223 aa15.03■□□□□ -0
HMGA2-209ENST00000539662 TRPC5Q9UL62 973 aaPredicted RBP15.03■□□□□ -0
HMGA2-209ENST00000539662 SLIT3O75094 1523 aa15.02■□□□□ -0
HMGA2-209ENST00000539662 BRD4O60885 1362 aaPredicted RBP15.02■□□□□ -0
HMGA2-209ENST00000539662 GCP02774 474 aa15.02■□□□□ -0
HMGA2-209ENST00000539662 NLRP13Q86W25 1043 aa15.02■□□□□ -0
HMGA2-209ENST00000539662 PRDM11Q9NQV5 511 aa15.02■□□□□ -0
HMGA2-209ENST00000539662 C11orf95C9JLR9 678 aaPredicted RBP15.01□□□□□ -0.01
HMGA2-209ENST00000539662 SOX12O15370 315 aa15□□□□□ -0.01
HMGA2-209ENST00000539662 EIF4G2P78344 907 aaKnown RBP eCLIP15□□□□□ -0.01
HMGA2-209ENST00000539662 HDGFL2Q7Z4V5 671 aaPredicted RBP15□□□□□ -0.01
HMGA2-209ENST00000539662 GJD4Q96KN9 370 aaPredicted RBP15□□□□□ -0.01
HMGA2-209ENST00000539662 LMO7Q8WWI1 1683 aa15□□□□□ -0.01
HMGA2-209ENST00000539662 CAMTA1Q9Y6Y1 1673 aa15□□□□□ -0.01
HMGA2-209ENST00000539662 TTC21AQ8NDW8 1320 aa14.99□□□□□ -0.01
HMGA2-209ENST00000539662 COL18A1P39060 1754 aa14.98□□□□□ -0.01
HMGA2-209ENST00000539662 CDK12Q9NYV4 1490 aaPredicted RBP14.98□□□□□ -0.01
HMGA2-209ENST00000539662 ZBTB7CA1YPR0 619 aa14.98□□□□□ -0.01
HMGA2-209ENST00000539662 VPS72Q15906 364 aa14.98□□□□□ -0.01
HMGA2-209ENST00000539662 TERF2IPQ9NYB0 399 aa14.98□□□□□ -0.01
HMGA2-209ENST00000539662 EDC4Q6P2E9 1401 aaKnown RBP14.98□□□□□ -0.01
HMGA2-209ENST00000539662 CPDO75976 1380 aa14.98□□□□□ -0.01
HMGA2-209ENST00000539662 NFAT5O94916 1531 aa14.97□□□□□ -0.01
HMGA2-209ENST00000539662 USP54Q70EL1 1684 aa14.97□□□□□ -0.01
HMGA2-209ENST00000539662 POLR3GLQ9BT43 218 aa14.97□□□□□ -0.01
HMGA2-209ENST00000539662 RGPD5Q99666 1765 aa14.97□□□□□ -0.01
HMGA2-209ENST00000539662 USP31Q70CQ4 1352 aa14.97□□□□□ -0.01
HMGA2-209ENST00000539662 ANKRD36BQ8N2N9 1353 aa14.97□□□□□ -0.01
HMGA2-209ENST00000539662 BRWD3Q6RI45 1802 aa14.96□□□□□ -0.01
HMGA2-209ENST00000539662 FBLN1P23142 703 aa14.96□□□□□ -0.01
HMGA2-209ENST00000539662 CARD14Q9BXL6 1004 aa14.96□□□□□ -0.01
HMGA2-209ENST00000539662 STRN4Q9NRL3 753 aa14.96□□□□□ -0.01
HMGA2-209ENST00000539662 CCDC9Q9Y3X0 531 aaKnown RBP14.96□□□□□ -0.01
HMGA2-209ENST00000539662 NINLQ9Y2I6 1382 aa14.96□□□□□ -0.02
HMGA2-209ENST00000539662 SLC24A1O60721 1099 aa14.95□□□□□ -0.02
HMGA2-209ENST00000539662 AXIN2Q9Y2T1 843 aa14.95□□□□□ -0.02
HMGA2-209ENST00000539662 OVOS2A0A0J9YW53 1432 aa14.94□□□□□ -0.02
HMGA2-209ENST00000539662 OVOS2Q6IE36 1432 aa14.94□□□□□ -0.02
HMGA2-209ENST00000539662 LARP1Q6PKG0 1096 aaKnown RBP14.93□□□□□ -0.02
HMGA2-209ENST00000539662 ARHGEF25Q86VW2 580 aa14.93□□□□□ -0.02
HMGA2-209ENST00000539662 LTN1O94822 1766 aa14.93□□□□□ -0.02
HMGA2-209ENST00000539662 SPATA31A5Q5VU36 1347 aa14.92□□□□□ -0.02
HMGA2-209ENST00000539662 SPATA31A7Q8IWB4 1347 aa14.92□□□□□ -0.02
HMGA2-209ENST00000539662 FAM98CQ17RN3 349 aaKnown RBP14.92□□□□□ -0.02
HMGA2-209ENST00000539662 CDCA8Q53HL2 280 aa14.92□□□□□ -0.02
HMGA2-209ENST00000539662 COL5A2P05997 1499 aaPredicted RBP14.92□□□□□ -0.02
HMGA2-209ENST00000539662 AATKQ6ZMQ8 1374 aa14.91□□□□□ -0.02
HMGA2-209ENST00000539662 FYB1O15117 783 aa14.91□□□□□ -0.02
HMGA2-209ENST00000539662 SEPT12Q8IYM1 358 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms