RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 TMC1Q8TDI8 760 aa22.1■■□□□ 1.13
RPAIN-206ENST00000539417 CPSF1Q10570 1443 aaKnown RBP22.1■■□□□ 1.13
RPAIN-206ENST00000539417 SSH2Q76I76 1423 aa22.1■■□□□ 1.13
RPAIN-206ENST00000539417 MEX3CQ5U5Q3 659 aaKnown RBP22.09■■□□□ 1.13
RPAIN-206ENST00000539417 ARHGEF10O15013 1369 aa22.09■■□□□ 1.13
RPAIN-206ENST00000539417 PUS7Q96PZ0 661 aaKnown RBP22.09■■□□□ 1.13
RPAIN-206ENST00000539417 CRYBG1Q9Y4K1 1723 aa22.08■■□□□ 1.13
RPAIN-206ENST00000539417 PHF23Q9BUL5 403 aaPredicted RBP22.08■■□□□ 1.12
RPAIN-206ENST00000539417 NRKQ7Z2Y5 1582 aa22.06■■□□□ 1.12
RPAIN-206ENST00000539417 MON2Q7Z3U7 1717 aa22.06■■□□□ 1.12
RPAIN-206ENST00000539417 C8orf37Q96NL8 207 aa22.06■■□□□ 1.12
RPAIN-206ENST00000539417 C11orf95C9JLR9 678 aaPredicted RBP22.05■■□□□ 1.12
RPAIN-206ENST00000539417 KTN1Q86UP2 1357 aaKnown RBP22.04■■□□□ 1.12
RPAIN-206ENST00000539417 MARF1Q9Y4F3 1742 aaKnown RBP22.04■■□□□ 1.12
RPAIN-206ENST00000539417 PIK3C2AO00443 1686 aa22.04■■□□□ 1.12
RPAIN-206ENST00000539417 MYOM1P52179 1685 aa22.04■■□□□ 1.12
RPAIN-206ENST00000539417 A0A1W2PP64 1363 aa22.03■■□□□ 1.12
RPAIN-206ENST00000539417 ABTB2Q8N961 1025 aa22.03■■□□□ 1.12
RPAIN-206ENST00000539417 TTC21BQ7Z4L5 1316 aa22.03■■□□□ 1.12
RPAIN-206ENST00000539417 SLC24A1O60721 1099 aa22.03■■□□□ 1.12
RPAIN-206ENST00000539417 POTEAQ6S8J7 498 aa22.03■■□□□ 1.12
RPAIN-206ENST00000539417 ILDR2Q71H61 639 aa22.03■■□□□ 1.12
RPAIN-206ENST00000539417 ZNF692Q9BU19 519 aaPredicted RBP22.03■■□□□ 1.12
RPAIN-206ENST00000539417 AFF2P51816 1311 aa22.02■■□□□ 1.12
RPAIN-206ENST00000539417 PHRF1Q9P1Y6 1649 aaKnown RBP22.02■■□□□ 1.11
RPAIN-206ENST00000539417 ZRANB1Q9UGI0 708 aa22.01■■□□□ 1.11
RPAIN-206ENST00000539417 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.99■■□□□ 1.11
RPAIN-206ENST00000539417 NGLY1Q96IV0 654 aa21.99■■□□□ 1.11
RPAIN-206ENST00000539417 POLR3GLQ9BT43 218 aa21.99■■□□□ 1.11
RPAIN-206ENST00000539417 BRD4O60885 1362 aaPredicted RBP21.99■■□□□ 1.11
RPAIN-206ENST00000539417 HAP1P54257 671 aaPredicted RBP21.98■■□□□ 1.11
RPAIN-206ENST00000539417 HDGFL2Q7Z4V5 671 aaPredicted RBP21.98■■□□□ 1.11
RPAIN-206ENST00000539417 USP19O94966 1318 aa21.98■■□□□ 1.11
RPAIN-206ENST00000539417 NINLQ9Y2I6 1382 aa21.97■■□□□ 1.11
RPAIN-206ENST00000539417 NLRP6P59044 892 aa21.96■■□□□ 1.11
RPAIN-206ENST00000539417 CDCA8Q53HL2 280 aa21.96■■□□□ 1.11
RPAIN-206ENST00000539417 NME9Q86XW9 330 aa21.96■■□□□ 1.11
RPAIN-206ENST00000539417 TERF2IPQ9NYB0 399 aa21.96■■□□□ 1.11
RPAIN-206ENST00000539417 FAM83GA6ND36 823 aa21.96■■□□□ 1.11
RPAIN-206ENST00000539417 ANKRD36BQ8N2N9 1353 aa21.95■■□□□ 1.11
RPAIN-206ENST00000539417 FNBP4Q8N3X1 1017 aaPredicted RBP21.95■■□□□ 1.1
RPAIN-206ENST00000539417 TTC21AQ8NDW8 1320 aa21.94■■□□□ 1.1
RPAIN-206ENST00000539417 EDC4Q6P2E9 1401 aaKnown RBP21.94■■□□□ 1.1
RPAIN-206ENST00000539417 ZC3H6P61129 1189 aaKnown RBP21.94■■□□□ 1.1
RPAIN-206ENST00000539417 NLRP13Q86W25 1043 aa21.94■■□□□ 1.1
RPAIN-206ENST00000539417 BCL9LQ86UU0 1499 aa21.94■■□□□ 1.1
RPAIN-206ENST00000539417 CARD14Q9BXL6 1004 aa21.93■■□□□ 1.1
RPAIN-206ENST00000539417 SLIT3O75094 1523 aa21.93■■□□□ 1.1
RPAIN-206ENST00000539417 SLIT2O94813 1529 aa21.93■■□□□ 1.1
RPAIN-206ENST00000539417 PLCH1Q4KWH8 1693 aa21.92■■□□□ 1.1
RPAIN-206ENST00000539417 KIAA0232Q92628 1395 aa21.92■■□□□ 1.1
RPAIN-206ENST00000539417 USP21Q9UK80 565 aa21.92■■□□□ 1.1
RPAIN-206ENST00000539417 GCP02774 474 aa21.91■■□□□ 1.1
RPAIN-206ENST00000539417 CHRNA2Q15822 529 aa21.91■■□□□ 1.1
RPAIN-206ENST00000539417 KIF7Q2M1P5 1343 aa21.91■■□□□ 1.1
RPAIN-206ENST00000539417 ZNF772Q68DY9 489 aaPredicted RBP21.9■■□□□ 1.1
RPAIN-206ENST00000539417 USP31Q70CQ4 1352 aa21.89■■□□□ 1.09
RPAIN-206ENST00000539417 SOX12O15370 315 aa21.89■■□□□ 1.09
RPAIN-206ENST00000539417 COL14A1Q05707 1796 aaKnown RBP21.88■■□□□ 1.09
RPAIN-206ENST00000539417 QTRT2Q9H974 415 aaKnown RBP21.88■■□□□ 1.09
RPAIN-206ENST00000539417 USP54Q70EL1 1684 aa21.88■■□□□ 1.09
RPAIN-206ENST00000539417 PRDM11Q9NQV5 511 aa21.87■■□□□ 1.09
RPAIN-206ENST00000539417 NRAPQ86VF7 1730 aa21.86■■□□□ 1.09
RPAIN-206ENST00000539417 OVOS2A0A0J9YW53 1432 aa21.86■■□□□ 1.09
RPAIN-206ENST00000539417 ATRNO75882 1429 aa21.86■■□□□ 1.09
RPAIN-206ENST00000539417 OVOS2Q6IE36 1432 aa21.86■■□□□ 1.09
RPAIN-206ENST00000539417 NSD3Q9BZ95 1437 aa21.86■■□□□ 1.09
RPAIN-206ENST00000539417 NFAT5O94916 1531 aa21.85■■□□□ 1.09
RPAIN-206ENST00000539417 BTG4Q9NY30 223 aa21.85■■□□□ 1.09
RPAIN-206ENST00000539417 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.85■■□□□ 1.09
RPAIN-206ENST00000539417 NWD2Q9ULI1 1742 aa21.85■■□□□ 1.09
RPAIN-206ENST00000539417 UNC5CLQ8IV45 518 aa21.84■■□□□ 1.09
RPAIN-206ENST00000539417 CPDO75976 1380 aa21.84■■□□□ 1.09
RPAIN-206ENST00000539417 ZBTB7CA1YPR0 619 aa21.83■■□□□ 1.09
RPAIN-206ENST00000539417 FYB1O15117 783 aa21.83■■□□□ 1.09
RPAIN-206ENST00000539417 GGNBP2Q9H3C7 697 aa21.83■■□□□ 1.09
RPAIN-206ENST00000539417 PANK3Q9H999 370 aa21.83■■□□□ 1.09
RPAIN-206ENST00000539417 WASHC2AQ641Q2 1341 aa21.83■■□□□ 1.09
RPAIN-206ENST00000539417 LMO7Q8WWI1 1683 aa21.83■■□□□ 1.09
RPAIN-206ENST00000539417 FBLN1P23142 703 aa21.83■■□□□ 1.08
RPAIN-206ENST00000539417 CAMTA1Q9Y6Y1 1673 aa21.83■■□□□ 1.08
RPAIN-206ENST00000539417 CCDC7Q96M83 1385 aa21.82■■□□□ 1.08
RPAIN-206ENST00000539417 TRPC5Q9UL62 973 aaPredicted RBP21.82■■□□□ 1.08
RPAIN-206ENST00000539417 COL18A1P39060 1754 aa21.81■■□□□ 1.08
RPAIN-206ENST00000539417 KIF20BQ96Q89 1820 aa21.81■■□□□ 1.08
RPAIN-206ENST00000539417 RXRBP28702 533 aa21.8■■□□□ 1.08
RPAIN-206ENST00000539417 ARHGEF25Q86VW2 580 aa21.8■■□□□ 1.08
RPAIN-206ENST00000539417 GLI3P10071 1580 aa21.8■■□□□ 1.08
RPAIN-206ENST00000539417 AXIN2Q9Y2T1 843 aa21.79■■□□□ 1.08
RPAIN-206ENST00000539417 KCNH5Q8NCM2 988 aa21.78■■□□□ 1.08
RPAIN-206ENST00000539417 RBM6P78332 1123 aaKnown RBP21.77■■□□□ 1.08
RPAIN-206ENST00000539417 GJD4Q96KN9 370 aaPredicted RBP21.77■■□□□ 1.08
RPAIN-206ENST00000539417 RGPD5Q99666 1765 aa21.77■■□□□ 1.08
RPAIN-206ENST00000539417 VPS72Q15906 364 aa21.77■■□□□ 1.07
RPAIN-206ENST00000539417 COG3Q96JB2 828 aa21.77■■□□□ 1.07
RPAIN-206ENST00000539417 STRN4Q9NRL3 753 aa21.77■■□□□ 1.07
RPAIN-206ENST00000539417 LTN1O94822 1766 aa21.76■■□□□ 1.07
RPAIN-206ENST00000539417 RGS12O14924 1447 aa21.76■■□□□ 1.07
RPAIN-206ENST00000539417 AATKQ6ZMQ8 1374 aa21.75■■□□□ 1.07
RPAIN-206ENST00000539417 CCDC9Q9Y3X0 531 aaKnown RBP21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms