RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 DEFB132Q7Z7B7 95 aa19.93■□□□□ 0.78
SS18-204ENST00000539244 SF3B2Q13435 895 aaKnown RBP19.92■□□□□ 0.78
SS18-204ENST00000539244 BTG4Q9NY30 223 aa19.92■□□□□ 0.78
SS18-204ENST00000539244 ITSN1Q15811 1721 aa19.92■□□□□ 0.78
SS18-204ENST00000539244 ATP7BP35670 1465 aa19.92■□□□□ 0.78
SS18-204ENST00000539244 NGDNQ8NEJ9 315 aaKnown RBP19.89■□□□□ 0.77
SS18-204ENST00000539244 FAM98CQ17RN3 349 aaKnown RBP19.88■□□□□ 0.77
SS18-204ENST00000539244 SPATA31A5Q5VU36 1347 aa19.87■□□□□ 0.77
SS18-204ENST00000539244 SPATA31A7Q8IWB4 1347 aa19.87■□□□□ 0.77
SS18-204ENST00000539244 THSD7AQ9UPZ6 1657 aa19.87■□□□□ 0.77
SS18-204ENST00000539244 NUDT16Q96DE0 195 aaKnown RBP19.86■□□□□ 0.77
SS18-204ENST00000539244 KIAA1210Q9ULL0 1709 aa19.85■□□□□ 0.77
SS18-204ENST00000539244 TOPAZ1Q8N9V7 1692 aa19.84■□□□□ 0.77
SS18-204ENST00000539244 POLR3AO14802 1390 aaPredicted RBP19.84■□□□□ 0.77
SS18-204ENST00000539244 A0A0G2JS52 829 aa19.84■□□□□ 0.77
SS18-204ENST00000539244 PAK3O75914 559 aaPredicted RBP19.84■□□□□ 0.77
SS18-204ENST00000539244 BAG6P46379 1132 aa19.84■□□□□ 0.77
SS18-204ENST00000539244 MYT1Q01538 1121 aa19.84■□□□□ 0.77
SS18-204ENST00000539244 PRDM11Q9NQV5 511 aa19.84■□□□□ 0.77
SS18-204ENST00000539244 LRP5O75197 1615 aa19.84■□□□□ 0.77
SS18-204ENST00000539244 PHRF1Q9P1Y6 1649 aaKnown RBP19.84■□□□□ 0.77
SS18-204ENST00000539244 RGPD1P0DJD0 1748 aa19.83■□□□□ 0.77
SS18-204ENST00000539244 CDK19Q9BWU1 502 aa19.81■□□□□ 0.76
SS18-204ENST00000539244 DISP2A7MBM2 1401 aa19.81■□□□□ 0.76
SS18-204ENST00000539244 KIAA0232Q92628 1395 aa19.81■□□□□ 0.76
SS18-204ENST00000539244 SPATA31A1Q5TZJ5 1347 aa19.79■□□□□ 0.76
SS18-204ENST00000539244 PLEKHG3A1L390 1219 aa19.79■□□□□ 0.76
SS18-204ENST00000539244 CCDC61Q9Y6R9 512 aa19.79■□□□□ 0.76
SS18-204ENST00000539244 TNS1Q9HBL0 1735 aaKnown RBP19.78■□□□□ 0.76
SS18-204ENST00000539244 ACEP12821 1306 aa19.77■□□□□ 0.76
SS18-204ENST00000539244 NBPF8Q3BBV2 869 aa19.77■□□□□ 0.76
SS18-204ENST00000539244 NRKQ7Z2Y5 1582 aa19.75■□□□□ 0.75
SS18-204ENST00000539244 EN1Q05925 392 aaPredicted RBP19.75■□□□□ 0.75
SS18-204ENST00000539244 CHRNA2Q15822 529 aa19.75■□□□□ 0.75
SS18-204ENST00000539244 FAM182BQ5T319 152 aa19.75■□□□□ 0.75
SS18-204ENST00000539244 CPDO75976 1380 aa19.74■□□□□ 0.75
SS18-204ENST00000539244 USP19O94966 1318 aa19.74■□□□□ 0.75
SS18-204ENST00000539244 LMO7Q8WWI1 1683 aa19.73■□□□□ 0.75
SS18-204ENST00000539244 ZC3H6P61129 1189 aaKnown RBP19.73■□□□□ 0.75
SS18-204ENST00000539244 NBPF1Q3BBV0 1214 aa19.73■□□□□ 0.75
SS18-204ENST00000539244 SSH2Q76I76 1423 aa19.73■□□□□ 0.75
SS18-204ENST00000539244 PSDA5PKW4 1024 aaPredicted RBP19.72■□□□□ 0.75
SS18-204ENST00000539244 NUTM2GQ5VZR2 741 aa19.72■□□□□ 0.75
SS18-204ENST00000539244 FAM196AQ6ZSG2 479 aa19.72■□□□□ 0.75
SS18-204ENST00000539244 BARGINQ6ZT62 677 aa19.72■□□□□ 0.75
SS18-204ENST00000539244 STRN4Q9NRL3 753 aa19.72■□□□□ 0.75
SS18-204ENST00000539244 CAMTA1Q9Y6Y1 1673 aa19.71■□□□□ 0.75
SS18-204ENST00000539244 ABTB2Q8N961 1025 aa19.71■□□□□ 0.75
SS18-204ENST00000539244 BRD4O60885 1362 aaPredicted RBP19.7■□□□□ 0.74
SS18-204ENST00000539244 PPIP5K1Q6PFW1 1433 aa19.69■□□□□ 0.74
SS18-204ENST00000539244 CENPJQ9HC77 1338 aaPredicted RBP19.69■□□□□ 0.74
SS18-204ENST00000539244 PARD3Q8TEW0 1356 aa19.69■□□□□ 0.74
SS18-204ENST00000539244 CAMKK2Q96RR4 588 aa19.68■□□□□ 0.74
SS18-204ENST00000539244 EVA1CP58658 441 aa19.67■□□□□ 0.74
SS18-204ENST00000539244 EZH2Q15910 746 aaKnown RBP19.67■□□□□ 0.74
SS18-204ENST00000539244 NLRP13Q86W25 1043 aa19.67■□□□□ 0.74
SS18-204ENST00000539244 QRICH2Q9H0J4 1663 aa19.66■□□□□ 0.74
SS18-204ENST00000539244 TRIM37O94972 964 aa19.66■□□□□ 0.74
SS18-204ENST00000539244 GCP02774 474 aa19.66■□□□□ 0.74
SS18-204ENST00000539244 SRPK2P78362 688 aaKnown RBP19.66■□□□□ 0.74
SS18-204ENST00000539244 LARP1Q6PKG0 1096 aaKnown RBP19.66■□□□□ 0.74
SS18-204ENST00000539244 TCP11L2Q8N4U5 519 aa19.66■□□□□ 0.74
SS18-204ENST00000539244 R3HDM1Q15032 1099 aaKnown RBP19.65■□□□□ 0.74
SS18-204ENST00000539244 USP35Q9P2H5 1018 aa19.65■□□□□ 0.74
SS18-204ENST00000539244 THRAP3Q9Y2W1 955 aaKnown RBP19.65■□□□□ 0.74
SS18-204ENST00000539244 COL5A2P05997 1499 aaPredicted RBP19.64■□□□□ 0.73
SS18-204ENST00000539244 RREB1Q92766 1687 aa19.64■□□□□ 0.73
SS18-204ENST00000539244 PARP4Q9UKK3 1724 aaKnown RBP19.64■□□□□ 0.73
SS18-204ENST00000539244 SLIT3O75094 1523 aa19.63■□□□□ 0.73
SS18-204ENST00000539244 USP6P35125 1406 aa19.63■□□□□ 0.73
SS18-204ENST00000539244 PDE3BQ13370 1112 aa19.63■□□□□ 0.73
SS18-204ENST00000539244 CABP2Q9NPB3 220 aa19.63■□□□□ 0.73
SS18-204ENST00000539244 APBA3O96018 575 aa19.62■□□□□ 0.73
SS18-204ENST00000539244 AATKQ6ZMQ8 1374 aa19.6■□□□□ 0.73
SS18-204ENST00000539244 CABP1Q9NZU7 370 aa19.6■□□□□ 0.73
SS18-204ENST00000539244 CRB1P82279 1406 aa19.59■□□□□ 0.73
SS18-204ENST00000539244 NUP188Q5SRE5 1749 aa19.59■□□□□ 0.73
SS18-204ENST00000539244 C11orf95C9JLR9 678 aaPredicted RBP19.59■□□□□ 0.73
SS18-204ENST00000539244 L3MBTL2Q969R5 705 aa19.58■□□□□ 0.72
SS18-204ENST00000539244 TRPM1Q7Z4N2 1603 aa19.58■□□□□ 0.72
SS18-204ENST00000539244 COL18A1P39060 1754 aa19.57■□□□□ 0.72
SS18-204ENST00000539244 PEAK1Q9H792 1746 aa19.57■□□□□ 0.72
SS18-204ENST00000539244 PIK3C2AO00443 1686 aa19.57■□□□□ 0.72
SS18-204ENST00000539244 NLRP6P59044 892 aa19.57■□□□□ 0.72
SS18-204ENST00000539244 EVC2Q86UK5 1308 aa19.56■□□□□ 0.72
SS18-204ENST00000539244 OVOS2A0A0G2JMS6 1433 aa19.54■□□□□ 0.72
SS18-204ENST00000539244 OVOS2A0A0J9YW53 1432 aa19.54■□□□□ 0.72
SS18-204ENST00000539244 OVOS2Q6IE36 1432 aa19.54■□□□□ 0.72
SS18-204ENST00000539244 RGPD3A6NKT7 1758 aaPredicted RBP19.54■□□□□ 0.72
SS18-204ENST00000539244 RGPD4Q7Z3J3 1758 aa19.54■□□□□ 0.72
SS18-204ENST00000539244 LRRC37A3O60309 1634 aa19.54■□□□□ 0.72
SS18-204ENST00000539244 AKAP12Q02952 1782 aa19.53■□□□□ 0.72
SS18-204ENST00000539244 SBF2Q86WG5 1849 aa19.53■□□□□ 0.72
SS18-204ENST00000539244 ZNF692Q9BU19 519 aaPredicted RBP19.52■□□□□ 0.72
SS18-204ENST00000539244 WNK3Q9BYP7 1800 aa19.52■□□□□ 0.72
SS18-204ENST00000539244 CPSF1Q10570 1443 aaKnown RBP19.51■□□□□ 0.71
SS18-204ENST00000539244 NBPF14Q5TI25 921 aa19.51■□□□□ 0.71
SS18-204ENST00000539244 WDR17Q8IZU2 1322 aa19.51■□□□□ 0.71
SS18-204ENST00000539244 ARHGEF25Q86VW2 580 aa19.5■□□□□ 0.71
SS18-204ENST00000539244 BCL9O00512 1426 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms