RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 PPP1R18Q6NYC8 613 aa8.89□□□□□ -0.99
USP28-207ENST00000538475 SCUBE3Q8IX30 993 aa8.89□□□□□ -0.99
USP28-207ENST00000538475 FAM43AQ8N2R8 423 aa8.89□□□□□ -0.99
USP28-207ENST00000538475 PCF11O94913 1555 aaKnown RBP8.89□□□□□ -0.99
USP28-207ENST00000538475 HMGXB3Q12766 1538 aa8.89□□□□□ -0.99
USP28-207ENST00000538475 FMN1Q68DA7 1419 aa8.88□□□□□ -0.99
USP28-207ENST00000538475 CASKIN1Q8WXD9 1431 aa8.88□□□□□ -0.99
USP28-207ENST00000538475 KTN1Q86UP2 1357 aaKnown RBP8.88□□□□□ -0.99
USP28-207ENST00000538475 TLL1O43897 1013 aa8.88□□□□□ -0.99
USP28-207ENST00000538475 FAM217BQ9NTX9 383 aaPredicted RBP8.88□□□□□ -0.99
USP28-207ENST00000538475 VIRMAQ69YN4 1812 aaKnown RBP8.88□□□□□ -0.99
USP28-207ENST00000538475 FGD6Q6ZV73 1430 aa8.88□□□□□ -0.99
USP28-207ENST00000538475 CTTNBP2Q8WZ74 1663 aa8.88□□□□□ -0.99
USP28-207ENST00000538475 KDM4AO75164 1064 aa8.87□□□□□ -0.99
USP28-207ENST00000538475 IL27Q8NEV9 243 aa8.87□□□□□ -0.99
USP28-207ENST00000538475 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.87□□□□□ -0.99
USP28-207ENST00000538475 SUPT6HQ7KZ85 1726 aaKnown RBP8.87□□□□□ -0.99
USP28-207ENST00000538475 CCDC7Q96M83 1385 aa8.86□□□□□ -0.99
USP28-207ENST00000538475 ZMYM4Q5VZL5 1548 aa8.86□□□□□ -0.99
USP28-207ENST00000538475 FGD5Q6ZNL6 1462 aa8.86□□□□□ -0.99
USP28-207ENST00000538475 TRIM66O15016 1216 aa8.86□□□□□ -0.99
USP28-207ENST00000538475 NEFMP07197 916 aa8.86□□□□□ -0.99
USP28-207ENST00000538475 SSTR3P32745 418 aaPredicted RBP8.86□□□□□ -0.99
USP28-207ENST00000538475 AMHR2Q16671 573 aa8.86□□□□□ -0.99
USP28-207ENST00000538475 MORN1Q5T089 497 aa8.86□□□□□ -0.99
USP28-207ENST00000538475 SLC24A3Q9HC58 644 aa8.86□□□□□ -0.99
USP28-207ENST00000538475 INSRP06213 1382 aa8.86□□□□□ -0.99
USP28-207ENST00000538475 IRX6P78412 446 aaPredicted RBP8.85□□□□□ -0.99
USP28-207ENST00000538475 NUTM1Q86Y26 1132 aa8.85□□□□□ -0.99
USP28-207ENST00000538475 TMUB1Q9BVT8 246 aa8.85□□□□□ -0.99
USP28-207ENST00000538475 REPIN1Q9BWE0 567 aaKnown RBP8.85□□□□□ -0.99
USP28-207ENST00000538475 MIA2Q96PC5 1412 aa8.85□□□□□ -0.99
USP28-207ENST00000538475 ADH1BP00325 375 aa8.84□□□□□ -0.99
USP28-207ENST00000538475 SPSB2Q99619 263 aa8.84□□□□□ -0.99
USP28-207ENST00000538475 MRS2Q9HD23 443 aa8.84□□□□□ -0.99
USP28-207ENST00000538475 SLC27A5Q9Y2P5 690 aa8.84□□□□□ -0.99
USP28-207ENST00000538475 CC2D2AQ9P2K1 1620 aa8.83□□□□□ -1
USP28-207ENST00000538475 NAIPQ13075 1403 aa8.83□□□□□ -1
USP28-207ENST00000538475 FMNL1O95466 1100 aaPredicted RBP8.83□□□□□ -1
USP28-207ENST00000538475 HSPA5P11021 654 aaKnown RBP8.83□□□□□ -1
USP28-207ENST00000538475 USP46P62068 366 aa8.83□□□□□ -1
USP28-207ENST00000538475 PDE3BQ13370 1112 aa8.83□□□□□ -1
USP28-207ENST00000538475 GIGYF2Q6Y7W6 1299 aaKnown RBP8.83□□□□□ -1
USP28-207ENST00000538475 BACH2Q9BYV9 841 aa8.83□□□□□ -1
USP28-207ENST00000538475 CUL7Q14999 1698 aa8.83□□□□□ -1
USP28-207ENST00000538475 ROCK2O75116 1388 aaKnown RBP8.83□□□□□ -1
USP28-207ENST00000538475 S1PR4O95977 384 aa8.82□□□□□ -1
USP28-207ENST00000538475 FAM50AQ14320 339 aaKnown RBP8.82□□□□□ -1
USP28-207ENST00000538475 SLC6A16Q9GZN6 736 aa8.82□□□□□ -1
USP28-207ENST00000538475 TCOF1Q13428 1488 aaKnown RBP8.81□□□□□ -1
USP28-207ENST00000538475 SPATA31E1Q6ZUB1 1445 aa8.8□□□□□ -1
USP28-207ENST00000538475 EHBP1L1Q8N3D4 1523 aa8.8□□□□□ -1
USP28-207ENST00000538475 PDE4DQ08499 809 aa8.8□□□□□ -1
USP28-207ENST00000538475 Q3C1V9 767 aa8.8□□□□□ -1
USP28-207ENST00000538475 PARP9Q8IXQ6 854 aa8.8□□□□□ -1
USP28-207ENST00000538475 PRKD2Q9BZL6 878 aa8.8□□□□□ -1
USP28-207ENST00000538475 IGF1RP08069 1367 aa8.8□□□□□ -1
USP28-207ENST00000538475 CFTRP13569 1480 aa8.79□□□□□ -1
USP28-207ENST00000538475 RNF223E7ERA6 249 aa8.79□□□□□ -1
USP28-207ENST00000538475 MYOM3Q5VTT5 1437 aa8.79□□□□□ -1
USP28-207ENST00000538475 CARMIL1Q5VZK9 1371 aa8.78□□□□□ -1
USP28-207ENST00000538475 PPEF1O14829 653 aaPredicted RBP8.78□□□□□ -1
USP28-207ENST00000538475 HOXA2O43364 376 aa8.78□□□□□ -1
USP28-207ENST00000538475 PKNOX2Q96KN3 472 aa8.78□□□□□ -1
USP28-207ENST00000538475 BEGAINQ9BUH8 593 aa8.78□□□□□ -1
USP28-207ENST00000538475 ARHGEF11O15085 1522 aa8.78□□□□□ -1
USP28-207ENST00000538475 RPRD2Q5VT52 1461 aaKnown RBP8.77□□□□□ -1
USP28-207ENST00000538475 PLEKHH2Q8IVE3 1493 aa8.77□□□□□ -1
USP28-207ENST00000538475 LRPPRCP42704 1394 aaKnown RBP8.77□□□□□ -1.01
USP28-207ENST00000538475 BRICD5Q6PL45 260 aa8.77□□□□□ -1.01
USP28-207ENST00000538475 RNF19BQ6ZMZ0 732 aa8.77□□□□□ -1.01
USP28-207ENST00000538475 FAM9BQ8IZU0 186 aa8.77□□□□□ -1.01
USP28-207ENST00000538475 HLA-CQ95604 372 aa8.77□□□□□ -1.01
USP28-207ENST00000538475 THAP11Q96EK4 314 aa8.77□□□□□ -1.01
USP28-207ENST00000538475 BRD4O60885 1362 aaPredicted RBP8.76□□□□□ -1.01
USP28-207ENST00000538475 RANGAP1P46060 587 aaPredicted RBP8.76□□□□□ -1.01
USP28-207ENST00000538475 L1TD1Q5T7N2 865 aaKnown RBP8.76□□□□□ -1.01
USP28-207ENST00000538475 ANKLE1Q8NAG6 615 aa8.76□□□□□ -1.01
USP28-207ENST00000538475 HIRIP3Q9BW71 556 aaPredicted RBP8.76□□□□□ -1.01
USP28-207ENST00000538475 E9PCH4 1651 aa8.75□□□□□ -1.01
USP28-207ENST00000538475 UGGT2Q9NYU1 1516 aa8.75□□□□□ -1.01
USP28-207ENST00000538475 LRRIQ1Q96JM4 1722 aa8.75□□□□□ -1.01
USP28-207ENST00000538475 SAMD9Q5K651 1589 aa8.75□□□□□ -1.01
USP28-207ENST00000538475 GUCA2AQ02747 115 aa8.75□□□□□ -1.01
USP28-207ENST00000538475 NFKBIBQ15653 356 aa8.75□□□□□ -1.01
USP28-207ENST00000538475 SPIRE2Q8WWL2 714 aa8.75□□□□□ -1.01
USP28-207ENST00000538475 V9GY48 417 aaPredicted RBP8.75□□□□□ -1.01
USP28-207ENST00000538475 KIF14Q15058 1648 aa8.75□□□□□ -1.01
USP28-207ENST00000538475 DHX29Q7Z478 1369 aaKnown RBP8.74□□□□□ -1.01
USP28-207ENST00000538475 CCDC144AA2RUR9 1427 aa8.74□□□□□ -1.01
USP28-207ENST00000538475 RRP9O43818 475 aaKnown RBP8.74□□□□□ -1.01
USP28-207ENST00000538475 EIF5BO60841 1220 aaKnown RBP8.74□□□□□ -1.01
USP28-207ENST00000538475 RRP1P56182 461 aaKnown RBP8.74□□□□□ -1.01
USP28-207ENST00000538475 DIXDC1Q155Q3 683 aa8.74□□□□□ -1.01
USP28-207ENST00000538475 FAM160A2Q8N612 972 aaPredicted RBP8.74□□□□□ -1.01
USP28-207ENST00000538475 USB1Q9BQ65 265 aaKnown RBP8.74□□□□□ -1.01
USP28-207ENST00000538475 SNAPC4Q5SXM2 1469 aa8.74□□□□□ -1.01
USP28-207ENST00000538475 TEX14Q8IWB6 1497 aa8.74□□□□□ -1.01
USP28-207ENST00000538475 FDX1P10109 184 aa8.73□□□□□ -1.01
USP28-207ENST00000538475 SLC19A1P41440 591 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms