RNA–Protein interactions for RNA: ENST00000538439.1

NPIPB3-209, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-209ENST00000538439 CRISPLD2Q9H0B8 497 aa14.1□□□□□ -0.15
NPIPB3-209ENST00000538439 LAMC1P11047 1609 aa14.1□□□□□ -0.15
NPIPB3-209ENST00000538439 PLEKHG1Q9ULL1 1385 aa14.09□□□□□ -0.15
NPIPB3-209ENST00000538439 TIE1P35590 1138 aa14.09□□□□□ -0.15
NPIPB3-209ENST00000538439 HIRIP3Q9BW71 556 aaPredicted RBP14.09□□□□□ -0.15
NPIPB3-209ENST00000538439 TRPC6Q9Y210 931 aa14.09□□□□□ -0.15
NPIPB3-209ENST00000538439 SCAF11Q99590 1463 aaKnown RBP14.08□□□□□ -0.16
NPIPB3-209ENST00000538439 DDX27Q96GQ7 796 aaKnown RBP14.08□□□□□ -0.16
NPIPB3-209ENST00000538439 SETBP1Q9Y6X0 1596 aa14.08□□□□□ -0.16
NPIPB3-209ENST00000538439 EIF3AQ14152 1382 aaKnown RBP14.08□□□□□ -0.16
NPIPB3-209ENST00000538439 TMEM132EQ6IEE7 984 aa14.07□□□□□ -0.16
NPIPB3-209ENST00000538439 RGS17Q9UGC6 210 aaPredicted RBP14.07□□□□□ -0.16
NPIPB3-209ENST00000538439 ST20-MTHFSA0A0A6YYL1 179 aa14.06□□□□□ -0.16
NPIPB3-209ENST00000538439 TESPA1A2RU30 521 aaPredicted RBP14.05□□□□□ -0.16
NPIPB3-209ENST00000538439 TRAK1Q9UPV9 953 aa14.04□□□□□ -0.16
NPIPB3-209ENST00000538439 TBX22Q9Y458 520 aa14.04□□□□□ -0.16
NPIPB3-209ENST00000538439 ADGRB1O14514 1584 aa14.04□□□□□ -0.16
NPIPB3-209ENST00000538439 SEMA3EO15041 775 aa14.03□□□□□ -0.16
NPIPB3-209ENST00000538439 STK26Q9P289 416 aa14.03□□□□□ -0.16
NPIPB3-209ENST00000538439 ARIH1Q9Y4X5 557 aaPredicted RBP14.03□□□□□ -0.16
NPIPB3-209ENST00000538439 CPS1P31327 1500 aa14.02□□□□□ -0.16
NPIPB3-209ENST00000538439 TTLL13PA6NNM8 815 aa14.02□□□□□ -0.17
NPIPB3-209ENST00000538439 SMYD5Q6GMV2 418 aa14.02□□□□□ -0.17
NPIPB3-209ENST00000538439 IQGAP1P46940 1657 aa14.01□□□□□ -0.17
NPIPB3-209ENST00000538439 ADAMTS13Q76LX8 1427 aa14.01□□□□□ -0.17
NPIPB3-209ENST00000538439 YTHDC2Q9H6S0 1430 aaKnown RBP14.01□□□□□ -0.17
NPIPB3-209ENST00000538439 SLC26A8Q96RN1 970 aa14.01□□□□□ -0.17
NPIPB3-209ENST00000538439 NRXN3Q9Y4C0 1643 aa14.01□□□□□ -0.17
NPIPB3-209ENST00000538439 LRPPRCP42704 1394 aaKnown RBP14□□□□□ -0.17
NPIPB3-209ENST00000538439 CENPJQ9HC77 1338 aaPredicted RBP14□□□□□ -0.17
NPIPB3-209ENST00000538439 PIP4K2BP78356 416 aa14□□□□□ -0.17
NPIPB3-209ENST00000538439 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14□□□□□ -0.17
NPIPB3-209ENST00000538439 NPHP4O75161 1426 aaPredicted RBP13.99□□□□□ -0.17
NPIPB3-209ENST00000538439 METP08581 1390 aa13.99□□□□□ -0.17
NPIPB3-209ENST00000538439 TMF1P82094 1093 aa13.99□□□□□ -0.17
NPIPB3-209ENST00000538439 DIP2AQ14689 1571 aa13.99□□□□□ -0.17
NPIPB3-209ENST00000538439 ASXL1Q8IXJ9 1541 aa13.99□□□□□ -0.17
NPIPB3-209ENST00000538439 MED14O60244 1454 aa13.99□□□□□ -0.17
NPIPB3-209ENST00000538439 ABCC11Q96J66 1382 aa13.98□□□□□ -0.17
NPIPB3-209ENST00000538439 CAMK2BQ13554 666 aa13.98□□□□□ -0.17
NPIPB3-209ENST00000538439 POGKQ9P215 609 aa13.98□□□□□ -0.17
NPIPB3-209ENST00000538439 TOM1O60784 492 aa13.97□□□□□ -0.17
NPIPB3-209ENST00000538439 TMEM132AQ24JP5 1023 aa13.97□□□□□ -0.17
NPIPB3-209ENST00000538439 CDCA8Q53HL2 280 aa13.97□□□□□ -0.17
NPIPB3-209ENST00000538439 ZC3H15Q8WU90 426 aaKnown RBP13.97□□□□□ -0.17
NPIPB3-209ENST00000538439 SIRT1Q96EB6 747 aa13.97□□□□□ -0.17
NPIPB3-209ENST00000538439 TESK2Q96S53 571 aa13.97□□□□□ -0.17
NPIPB3-209ENST00000538439 BMP2KQ9NSY1 1161 aaPredicted RBP13.97□□□□□ -0.17
NPIPB3-209ENST00000538439 PIK3R4Q99570 1358 aa13.96□□□□□ -0.17
NPIPB3-209ENST00000538439 STRCP1A6NGW2 1772 aa13.96□□□□□ -0.17
NPIPB3-209ENST00000538439 SETD1AO15047 1707 aaKnown RBP13.96□□□□□ -0.17
NPIPB3-209ENST00000538439 DLC1Q96QB1 1528 aa13.95□□□□□ -0.18
NPIPB3-209ENST00000538439 C11orf95C9JLR9 678 aaPredicted RBP13.95□□□□□ -0.18
NPIPB3-209ENST00000538439 PRAM1Q96QH2 718 aa13.95□□□□□ -0.18
NPIPB3-209ENST00000538439 POLR3GLQ9BT43 218 aa13.95□□□□□ -0.18
NPIPB3-209ENST00000538439 AMOTL2Q9Y2J4 779 aa13.95□□□□□ -0.18
NPIPB3-209ENST00000538439 POLR1AO95602 1720 aaPredicted RBP13.95□□□□□ -0.18
NPIPB3-209ENST00000538439 CCDC7Q96M83 1385 aa13.95□□□□□ -0.18
NPIPB3-209ENST00000538439 SBNO2Q9Y2G9 1366 aa13.95□□□□□ -0.18
NPIPB3-209ENST00000538439 KIF7Q2M1P5 1343 aa13.94□□□□□ -0.18
NPIPB3-209ENST00000538439 WASHC2AQ641Q2 1341 aa13.94□□□□□ -0.18
NPIPB3-209ENST00000538439 TRIM35Q9UPQ4 493 aa13.94□□□□□ -0.18
NPIPB3-209ENST00000538439 TECPR2O15040 1411 aa13.93□□□□□ -0.18
NPIPB3-209ENST00000538439 CLCN6P51797 869 aa13.93□□□□□ -0.18
NPIPB3-209ENST00000538439 DDX10Q13206 875 aaKnown RBP13.93□□□□□ -0.18
NPIPB3-209ENST00000538439 DIEXFQ68CQ4 756 aaKnown RBP13.93□□□□□ -0.18
NPIPB3-209ENST00000538439 LRRC7Q96NW7 1537 aa13.93□□□□□ -0.18
NPIPB3-209ENST00000538439 FAM135BQ49AJ0 1406 aa13.92□□□□□ -0.18
NPIPB3-209ENST00000538439 SAFB2Q14151 953 aaKnown RBP eCLIP13.92□□□□□ -0.18
NPIPB3-209ENST00000538439 PPP1R15BQ5SWA1 713 aa13.92□□□□□ -0.18
NPIPB3-209ENST00000538439 GPHNQ9NQX3 736 aaPredicted RBP13.92□□□□□ -0.18
NPIPB3-209ENST00000538439 ARHGEF28Q8N1W1 1705 aaKnown RBP13.92□□□□□ -0.18
NPIPB3-209ENST00000538439 EVC2Q86UK5 1308 aa13.91□□□□□ -0.18
NPIPB3-209ENST00000538439 PTPRUQ92729 1446 aa13.91□□□□□ -0.18
NPIPB3-209ENST00000538439 WAPLQ7Z5K2 1190 aa13.91□□□□□ -0.18
NPIPB3-209ENST00000538439 KNDC1Q76NI1 1749 aa13.9□□□□□ -0.18
NPIPB3-209ENST00000538439 KCNA6P17658 529 aa13.9□□□□□ -0.18
NPIPB3-209ENST00000538439 MINK1Q8N4C8 1332 aaPredicted RBP13.9□□□□□ -0.19
NPIPB3-209ENST00000538439 QRICH2Q9H0J4 1663 aa13.89□□□□□ -0.19
NPIPB3-209ENST00000538439 POTEAQ6S8J7 498 aa13.89□□□□□ -0.19
NPIPB3-209ENST00000538439 PUS7Q96PZ0 661 aaKnown RBP13.89□□□□□ -0.19
NPIPB3-209ENST00000538439 SRCAPQ6ZRS2 3230 aa13.89□□□□□ -0.19
NPIPB3-209ENST00000538439 ROBO2Q9HCK4 1378 aa13.88□□□□□ -0.19
NPIPB3-209ENST00000538439 GALR2O43603 387 aaPredicted RBP13.88□□□□□ -0.19
NPIPB3-209ENST00000538439 GTF3C3Q9Y5Q9 886 aa13.88□□□□□ -0.19
NPIPB3-209ENST00000538439 PTCH1Q13635 1447 aa13.88□□□□□ -0.19
NPIPB3-209ENST00000538439 PLEKHH1Q9ULM0 1364 aa13.87□□□□□ -0.19
NPIPB3-209ENST00000538439 XRN1Q8IZH2 1706 aaKnown RBP13.85□□□□□ -0.19
NPIPB3-209ENST00000538439 SRPK2P78362 688 aaKnown RBP13.85□□□□□ -0.19
NPIPB3-209ENST00000538439 CHD2O14647 1828 aaKnown RBP13.85□□□□□ -0.19
NPIPB3-209ENST00000538439 MICALL2Q8IY33 904 aa13.84□□□□□ -0.19
NPIPB3-209ENST00000538439 CDK19Q9BWU1 502 aa13.84□□□□□ -0.19
NPIPB3-209ENST00000538439 WASLO00401 505 aaPredicted RBP13.83□□□□□ -0.2
NPIPB3-209ENST00000538439 PROSER2Q86WR7 435 aaPredicted RBP13.83□□□□□ -0.2
NPIPB3-209ENST00000538439 XIRP1Q702N8 1843 aaKnown RBP13.83□□□□□ -0.2
NPIPB3-209ENST00000538439 ATAD2Q6PL18 1390 aa13.83□□□□□ -0.2
NPIPB3-209ENST00000538439 BRPF1P55201 1214 aaPredicted RBP13.82□□□□□ -0.2
NPIPB3-209ENST00000538439 TMC2Q8TDI7 906 aa13.82□□□□□ -0.2
NPIPB3-209ENST00000538439 TULP4Q9NRJ4 1543 aa13.81□□□□□ -0.2
NPIPB3-209ENST00000538439 NWD1Q149M9 1564 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms