RNA–Protein interactions for RNA: ENST00000536688.5

RFX4-204, Transcript of regulatory factor X4, humanhuman

TSL 1 (best)

Gene RFX4, Length 2,186 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-204ENST00000536688 IQGAP2Q13576 1575 aa12.47□□□□□ -0.41
RFX4-204ENST00000536688 SPDYE4A6NLX3 237 aa12.46□□□□□ -0.41
RFX4-204ENST00000536688 MBD3O95983 291 aa12.46□□□□□ -0.41
RFX4-204ENST00000536688 FAM184AQ8NB25 1140 aa12.46□□□□□ -0.41
RFX4-204ENST00000536688 KIF2CQ99661 725 aa12.46□□□□□ -0.41
RFX4-204ENST00000536688 CWC22Q9HCG8 908 aaKnown RBP12.46□□□□□ -0.41
RFX4-204ENST00000536688 SPINK5Q9NQ38 1064 aaPredicted RBP12.46□□□□□ -0.41
RFX4-204ENST00000536688 MORC2Q9Y6X9 1032 aaPredicted RBP12.46□□□□□ -0.41
RFX4-204ENST00000536688 ABCC10Q5T3U5 1492 aa12.46□□□□□ -0.41
RFX4-204ENST00000536688 ZBTB22O15209 634 aa12.46□□□□□ -0.42
RFX4-204ENST00000536688 PKD2Q13563 968 aa12.46□□□□□ -0.42
RFX4-204ENST00000536688 PRAG1Q86YV5 1406 aa12.46□□□□□ -0.42
RFX4-204ENST00000536688 SECISBP2LQ93073 1101 aaKnown RBP12.46□□□□□ -0.42
RFX4-204ENST00000536688 REREQ9P2R6 1566 aa12.46□□□□□ -0.42
RFX4-204ENST00000536688 ERBINQ96RT1 1412 aa12.45□□□□□ -0.42
RFX4-204ENST00000536688 U2AF2P26368 475 aaKnown RBP eCLIP12.45□□□□□ -0.42
RFX4-204ENST00000536688 GEMIN8Q9NWZ8 242 aaKnown RBP12.45□□□□□ -0.42
RFX4-204ENST00000536688 DDX41Q9UJV9 622 aaKnown RBP12.45□□□□□ -0.42
RFX4-204ENST00000536688 TERF2Q15554 542 aa12.45□□□□□ -0.42
RFX4-204ENST00000536688 JPH4Q96JJ6 628 aa12.45□□□□□ -0.42
RFX4-204ENST00000536688 TPM3P06753 285 aa12.44□□□□□ -0.42
RFX4-204ENST00000536688 RARSP54136 660 aaKnown RBP12.44□□□□□ -0.42
RFX4-204ENST00000536688 MCTP1Q6DN14 999 aa12.44□□□□□ -0.42
RFX4-204ENST00000536688 TESK2Q96S53 571 aa12.44□□□□□ -0.42
RFX4-204ENST00000536688 CTNNA3Q9UI47 895 aa12.44□□□□□ -0.42
RFX4-204ENST00000536688 ARID3CA6NKF2 412 aa12.43□□□□□ -0.42
RFX4-204ENST00000536688 TSC1Q92574 1164 aa12.43□□□□□ -0.42
RFX4-204ENST00000536688 KANK1Q14678 1352 aa12.43□□□□□ -0.42
RFX4-204ENST00000536688 PRG4Q92954 1404 aaPredicted RBP12.43□□□□□ -0.42
RFX4-204ENST00000536688 EIF2AK4Q9P2K8 1649 aaKnown RBP12.43□□□□□ -0.42
RFX4-204ENST00000536688 DISP3Q9P2K9 1392 aa12.43□□□□□ -0.42
RFX4-204ENST00000536688 PTPRGP23470 1445 aa12.43□□□□□ -0.42
RFX4-204ENST00000536688 SCAF11Q99590 1463 aaKnown RBP12.42□□□□□ -0.42
RFX4-204ENST00000536688 SYNMO15061 1565 aa12.42□□□□□ -0.42
RFX4-204ENST00000536688 TMF1P82094 1093 aa12.42□□□□□ -0.42
RFX4-204ENST00000536688 GAS2L2Q8NHY3 880 aa12.42□□□□□ -0.42
RFX4-204ENST00000536688 RNF216Q9NWF9 866 aaPredicted RBP12.42□□□□□ -0.42
RFX4-204ENST00000536688 CROCC2H7BZ55 1655 aa12.42□□□□□ -0.42
RFX4-204ENST00000536688 MVPQ14764 893 aaKnown RBP12.42□□□□□ -0.42
RFX4-204ENST00000536688 NCBP3Q53F19 620 aaKnown RBP12.42□□□□□ -0.42
RFX4-204ENST00000536688 GPT2Q8TD30 523 aa12.42□□□□□ -0.42
RFX4-204ENST00000536688 TSPY26PQ9H489 355 aa12.42□□□□□ -0.42
RFX4-204ENST00000536688 ASXL1Q8IXJ9 1541 aa12.41□□□□□ -0.42
RFX4-204ENST00000536688 APAF1O14727 1248 aa12.41□□□□□ -0.42
RFX4-204ENST00000536688 CLGNO14967 610 aa12.41□□□□□ -0.42
RFX4-204ENST00000536688 PHF14O94880 888 aa12.41□□□□□ -0.42
RFX4-204ENST00000536688 BMP2KLQ5H9B9 411 aa12.41□□□□□ -0.42
RFX4-204ENST00000536688 AXDND1Q5T1B0 1012 aaPredicted RBP12.41□□□□□ -0.42
RFX4-204ENST00000536688 PLPPR3Q6T4P5 718 aa12.41□□□□□ -0.42
RFX4-204ENST00000536688 SYAP1Q96A49 352 aaPredicted RBP12.41□□□□□ -0.42
RFX4-204ENST00000536688 WDR7Q9Y4E6 1490 aa12.4□□□□□ -0.42
RFX4-204ENST00000536688 CAPN2P17655 700 aa12.4□□□□□ -0.42
RFX4-204ENST00000536688 JARID2Q92833 1246 aaPredicted RBP12.4□□□□□ -0.42
RFX4-204ENST00000536688 CFAP44Q96MT7 982 aa12.4□□□□□ -0.42
RFX4-204ENST00000536688 PHF23Q9BUL5 403 aaPredicted RBP12.4□□□□□ -0.42
RFX4-204ENST00000536688 AMER1Q5JTC6 1135 aaPredicted RBP12.4□□□□□ -0.42
RFX4-204ENST00000536688 KNSTRNQ9Y448 316 aa12.4□□□□□ -0.42
RFX4-204ENST00000536688 CFAP74Q9C0B2 1584 aa12.4□□□□□ -0.43
RFX4-204ENST00000536688 RIOK3O14730 519 aaKnown RBP12.39□□□□□ -0.43
RFX4-204ENST00000536688 RLBP1P12271 317 aa12.39□□□□□ -0.43
RFX4-204ENST00000536688 RABEP1Q15276 862 aa12.39□□□□□ -0.43
RFX4-204ENST00000536688 CTR9Q6PD62 1173 aa12.39□□□□□ -0.43
RFX4-204ENST00000536688 KRT222Q8N1A0 295 aa12.39□□□□□ -0.43
RFX4-204ENST00000536688 TMEM63CQ9P1W3 806 aa12.39□□□□□ -0.43
RFX4-204ENST00000536688 BCCIPQ9P287 314 aaKnown RBP eCLIP12.39□□□□□ -0.43
RFX4-204ENST00000536688 SYCE3A1L190 88 aa12.39□□□□□ -0.43
RFX4-204ENST00000536688 FAM53CQ9NYF3 392 aa12.39□□□□□ -0.43
RFX4-204ENST00000536688 IGSF3O75054 1194 aa12.38□□□□□ -0.43
RFX4-204ENST00000536688 CD2BP2O95400 341 aaKnown RBP12.38□□□□□ -0.43
RFX4-204ENST00000536688 CT47B1P0C2W7 299 aaPredicted RBP12.38□□□□□ -0.43
RFX4-204ENST00000536688 MAGI2Q86UL8 1455 aa12.38□□□□□ -0.43
RFX4-204ENST00000536688 NCBP1Q09161 790 aaKnown RBP12.37□□□□□ -0.43
RFX4-204ENST00000536688 KIAA1524Q8TCG1 905 aa12.37□□□□□ -0.43
RFX4-204ENST00000536688 CCDC141Q6ZP82 1450 aa12.37□□□□□ -0.43
RFX4-204ENST00000536688 ANKRD36BQ8N2N9 1353 aa12.37□□□□□ -0.43
RFX4-204ENST00000536688 PRPF40AO75400 957 aaKnown RBP12.37□□□□□ -0.43
RFX4-204ENST00000536688 WWC1Q8IX03 1113 aa12.37□□□□□ -0.43
RFX4-204ENST00000536688 TRIM6-TRIM34B2RNG4 842 aa12.36□□□□□ -0.43
RFX4-204ENST00000536688 NUCB1Q02818 461 aa12.36□□□□□ -0.43
RFX4-204ENST00000536688 WDR63Q8IWG1 891 aa12.36□□□□□ -0.43
RFX4-204ENST00000536688 KIF18AQ8NI77 898 aa12.36□□□□□ -0.43
RFX4-204ENST00000536688 TRIM34Q9BYJ4 488 aa12.36□□□□□ -0.43
RFX4-204ENST00000536688 AK9Q5TCS8 1911 aa12.36□□□□□ -0.43
RFX4-204ENST00000536688 FEZ2Q9UHY8 353 aaPredicted RBP12.36□□□□□ -0.43
RFX4-204ENST00000536688 ANKRD50Q9ULJ7 1429 aa12.35□□□□□ -0.43
RFX4-204ENST00000536688 PSEN1P49768 467 aa12.35□□□□□ -0.43
RFX4-204ENST00000536688 RBM27Q9P2N5 1060 aaKnown RBP12.35□□□□□ -0.43
RFX4-204ENST00000536688 CDK13Q14004 1512 aaKnown RBP12.35□□□□□ -0.43
RFX4-204ENST00000536688 KIAA0556O60303 1618 aa12.35□□□□□ -0.43
RFX4-204ENST00000536688 RAD50Q92878 1312 aa12.34□□□□□ -0.43
RFX4-204ENST00000536688 RNF17Q9BXT8 1623 aaKnown RBP12.34□□□□□ -0.43
RFX4-204ENST00000536688 SMTNL1A8MU46 457 aa12.34□□□□□ -0.43
RFX4-204ENST00000536688 ZKSCAN2Q63HK3 967 aa12.34□□□□□ -0.43
RFX4-204ENST00000536688 ZNF622Q969S3 477 aaKnown RBP eCLIP12.34□□□□□ -0.43
RFX4-204ENST00000536688 DDX19BQ9UMR2 479 aa12.34□□□□□ -0.43
RFX4-204ENST00000536688 DMRT2Q9Y5R5 561 aa12.34□□□□□ -0.43
RFX4-204ENST00000536688 DZIP1LQ8IYY4 767 aaKnown RBP12.33□□□□□ -0.44
RFX4-204ENST00000536688 FOXD4L1Q9NU39 408 aa12.33□□□□□ -0.44
RFX4-204ENST00000536688 KDM2AQ9Y2K7 1162 aa12.33□□□□□ -0.44
RFX4-204ENST00000536688 PLB1Q6P1J6 1458 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms