RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 PRR20BP86481 221 aa11.21□□□□□ -0.61
PRKDC-205ENST00000535375 PRR20AP86496 221 aa11.21□□□□□ -0.61
PRKDC-205ENST00000535375 TMEM132AQ24JP5 1023 aa11.21□□□□□ -0.61
PRKDC-205ENST00000535375 LINC01559Q495D7 138 aa11.21□□□□□ -0.61
PRKDC-205ENST00000535375 TRAF7Q6Q0C0 670 aa11.21□□□□□ -0.61
PRKDC-205ENST00000535375 TNFRSF10AO00220 468 aa11.2□□□□□ -0.62
PRKDC-205ENST00000535375 RC3H1Q5TC82 1133 aaKnown RBP11.19□□□□□ -0.62
PRKDC-205ENST00000535375 PNMA1Q8ND90 353 aa11.19□□□□□ -0.62
PRKDC-205ENST00000535375 WNT7AO00755 349 aa11.18□□□□□ -0.62
PRKDC-205ENST00000535375 SKOR1P84550 965 aa11.18□□□□□ -0.62
PRKDC-205ENST00000535375 NR6A1Q15406 480 aa11.18□□□□□ -0.62
PRKDC-205ENST00000535375 ZNF511Q8NB15 262 aa11.18□□□□□ -0.62
PRKDC-205ENST00000535375 BANK1Q8NDB2 785 aa11.18□□□□□ -0.62
PRKDC-205ENST00000535375 GDF9O60383 454 aa11.17□□□□□ -0.62
PRKDC-205ENST00000535375 SH3BP2P78314 561 aa11.17□□□□□ -0.62
PRKDC-205ENST00000535375 AGERQ15109 404 aa11.17□□□□□ -0.62
PRKDC-205ENST00000535375 NBPF14Q5TI25 921 aa11.17□□□□□ -0.62
PRKDC-205ENST00000535375 PKD2L1Q9P0L9 805 aa11.17□□□□□ -0.62
PRKDC-205ENST00000535375 PKDCCQ504Y2 493 aa11.16□□□□□ -0.62
PRKDC-205ENST00000535375 CYP4X1Q8N118 509 aa11.16□□□□□ -0.62
PRKDC-205ENST00000535375 EHBP1Q8NDI1 1231 aa11.16□□□□□ -0.62
PRKDC-205ENST00000535375 LCE2BO14633 110 aa11.15□□□□□ -0.62
PRKDC-205ENST00000535375 MRGPRX2Q96LB1 330 aa11.15□□□□□ -0.62
PRKDC-205ENST00000535375 TTC24A2A3L6 582 aaPredicted RBP11.14□□□□□ -0.63
PRKDC-205ENST00000535375 HMX1Q9NP08 348 aaPredicted RBP11.14□□□□□ -0.63
PRKDC-205ENST00000535375 FKBPLQ9UIM3 349 aa11.14□□□□□ -0.63
PRKDC-205ENST00000535375 APBB1O00213 710 aa11.13□□□□□ -0.63
PRKDC-205ENST00000535375 DGAT1O75907 488 aa11.13□□□□□ -0.63
PRKDC-205ENST00000535375 GPKOWQ92917 476 aaPredicted RBP eCLIP11.13□□□□□ -0.63
PRKDC-205ENST00000535375 FAM187AA6NFU0 413 aa11.12□□□□□ -0.63
PRKDC-205ENST00000535375 BPHLQ86WA6 291 aaPredicted RBP11.12□□□□□ -0.63
PRKDC-205ENST00000535375 VARSP26640 1264 aaKnown RBP11.11□□□□□ -0.63
PRKDC-205ENST00000535375 SNIP1Q8TAD8 396 aaKnown RBP11.11□□□□□ -0.63
PRKDC-205ENST00000535375 EPS8L1Q8TE68 723 aa11.11□□□□□ -0.63
PRKDC-205ENST00000535375 ZC3H4Q9UPT8 1303 aaKnown RBP11.1□□□□□ -0.63
PRKDC-205ENST00000535375 FAM174AQ8TBP5 190 aa11.1□□□□□ -0.63
PRKDC-205ENST00000535375 FOXJ1Q92949 421 aa11.1□□□□□ -0.63
PRKDC-205ENST00000535375 PDXDC2PQ6P474 469 aa11.09□□□□□ -0.63
PRKDC-205ENST00000535375 SNRKQ9NRH2 765 aa11.09□□□□□ -0.63
PRKDC-205ENST00000535375 PRM3Q9NNZ6 103 aa11.08□□□□□ -0.64
PRKDC-205ENST00000535375 TOR4AQ9NXH8 423 aa11.08□□□□□ -0.64
PRKDC-205ENST00000535375 PTK2Q05397 1052 aa11.07□□□□□ -0.64
PRKDC-205ENST00000535375 TRIM34Q9BYJ4 488 aa11.07□□□□□ -0.64
PRKDC-205ENST00000535375 MAGEB6P1A0A0J9YX57 407 aa11.06□□□□□ -0.64
PRKDC-205ENST00000535375 ALDH1A1P00352 501 aa11.06□□□□□ -0.64
PRKDC-205ENST00000535375 MTMR14Q8NCE2 650 aa11.06□□□□□ -0.64
PRKDC-205ENST00000535375 ARHGAP9Q9BRR9 750 aa11.06□□□□□ -0.64
PRKDC-205ENST00000535375 SOCS7O14512 581 aa11.05□□□□□ -0.64
PRKDC-205ENST00000535375 MYT1Q01538 1121 aa11.05□□□□□ -0.64
PRKDC-205ENST00000535375 GJD4Q96KN9 370 aaPredicted RBP11.05□□□□□ -0.64
PRKDC-205ENST00000535375 CARD14Q9BXL6 1004 aa11.05□□□□□ -0.64
PRKDC-205ENST00000535375 NDUFB9Q9Y6M9 179 aa11.05□□□□□ -0.64
PRKDC-205ENST00000535375 SH3BP5LQ7L8J4 393 aa11.04□□□□□ -0.64
PRKDC-205ENST00000535375 ZBTB33Q86T24 672 aa11.04□□□□□ -0.64
PRKDC-205ENST00000535375 GPSM3Q9Y4H4 160 aa11.04□□□□□ -0.64
PRKDC-205ENST00000535375 WASF2Q9Y6W5 498 aa11.04□□□□□ -0.64
PRKDC-205ENST00000535375 SIAH2O43255 324 aa11.03□□□□□ -0.64
PRKDC-205ENST00000535375 ARID5BQ14865 1188 aa11.03□□□□□ -0.64
PRKDC-205ENST00000535375 J3QL48 77 aa11.02□□□□□ -0.65
PRKDC-205ENST00000535375 C4orf48Q5BLP8 95 aa11.02□□□□□ -0.65
PRKDC-205ENST00000535375 SH3RF1Q7Z6J0 888 aa11.02□□□□□ -0.65
PRKDC-205ENST00000535375 TLL2Q9Y6L7 1015 aa11.01□□□□□ -0.65
PRKDC-205ENST00000535375 SMPD1P17405 629 aa11□□□□□ -0.65
PRKDC-205ENST00000535375 MPNDQ8N594 471 aa11□□□□□ -0.65
PRKDC-205ENST00000535375 ZNF787Q6DD87 383 aa10.99□□□□□ -0.65
PRKDC-205ENST00000535375 FLIIQ13045 1269 aa10.98□□□□□ -0.65
PRKDC-205ENST00000535375 ERFEQ4G0M1 354 aa10.98□□□□□ -0.65
PRKDC-205ENST00000535375 SLC10A4Q96EP9 437 aa10.98□□□□□ -0.65
PRKDC-205ENST00000535375 C1QTNF2Q9BXJ5 285 aa10.98□□□□□ -0.65
PRKDC-205ENST00000535375 ZBBXA8MT70 800 aa10.97□□□□□ -0.65
PRKDC-205ENST00000535375 MCM6Q14566 821 aa10.97□□□□□ -0.65
PRKDC-205ENST00000535375 VASH1Q7L8A9 365 aaPredicted RBP10.97□□□□□ -0.65
PRKDC-205ENST00000535375 ADAM32Q8TC27 787 aa10.97□□□□□ -0.65
PRKDC-205ENST00000535375 ST8SIA5O15466 376 aa10.96□□□□□ -0.65
PRKDC-205ENST00000535375 TRMT44Q8IYL2 757 aaKnown RBP10.96□□□□□ -0.65
PRKDC-205ENST00000535375 CDK15Q96Q40 435 aa10.96□□□□□ -0.65
PRKDC-205ENST00000535375 ADH1CP00326 375 aa10.95□□□□□ -0.66
PRKDC-205ENST00000535375 AVPP01185 164 aa10.95□□□□□ -0.66
PRKDC-205ENST00000535375 AAASQ9NRG9 546 aa10.95□□□□□ -0.66
PRKDC-205ENST00000535375 CDV3Q9UKY7 258 aaKnown RBP10.95□□□□□ -0.66
PRKDC-205ENST00000535375 TBC1D2BQ9UPU7 963 aa10.95□□□□□ -0.66
PRKDC-205ENST00000535375 ZNF330Q9Y3S2 320 aaPredicted RBP10.95□□□□□ -0.66
PRKDC-205ENST00000535375 DZIP3Q86Y13 1208 aaKnown RBP10.94□□□□□ -0.66
PRKDC-205ENST00000535375 NR5A1Q13285 461 aa10.93□□□□□ -0.66
PRKDC-205ENST00000535375 CRIPAKQ8N1N5 446 aa10.93□□□□□ -0.66
PRKDC-205ENST00000535375 HPS1Q92902 700 aa10.93□□□□□ -0.66
PRKDC-205ENST00000535375 OCSTAMPQ9BR26 566 aa10.93□□□□□ -0.66
PRKDC-205ENST00000535375 GDPD2Q9HCC8 539 aa10.93□□□□□ -0.66
PRKDC-205ENST00000535375 AXIN1O15169 862 aa10.92□□□□□ -0.66
PRKDC-205ENST00000535375 FBXO45P0C2W1 286 aa10.92□□□□□ -0.66
PRKDC-205ENST00000535375 ABL2P42684 1182 aa10.92□□□□□ -0.66
PRKDC-205ENST00000535375 NR1H3Q13133 447 aa10.92□□□□□ -0.66
PRKDC-205ENST00000535375 NNTQ13423 1086 aa10.92□□□□□ -0.66
PRKDC-205ENST00000535375 CTC1Q2NKJ3 1217 aa10.92□□□□□ -0.66
PRKDC-205ENST00000535375 MAP4K5Q9Y4K4 846 aa10.92□□□□□ -0.66
PRKDC-205ENST00000535375 RAD21O60216 631 aa10.91□□□□□ -0.66
PRKDC-205ENST00000535375 PCDHB9Q9Y5E1 797 aa10.91□□□□□ -0.66
PRKDC-205ENST00000535375 UBTFP17480 764 aaKnown RBP10.9□□□□□ -0.66
PRKDC-205ENST00000535375 FSHRP23945 695 aa10.9□□□□□ -0.66
PRKDC-205ENST00000535375 GRM5P41594 1212 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms