RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 ZNF784Q8NCA9 323 aaPredicted RBP10.1□□□□□ -0.79
CD44-237ENST00000534082 PPP1R1BQ9UD71 204 aaPredicted RBP10.1□□□□□ -0.79
CD44-237ENST00000534082 CAMTA1Q9Y6Y1 1673 aa10.09□□□□□ -0.79
CD44-237ENST00000534082 CD44P16070 742 aaKnown RBP10.09□□□□□ -0.79
CD44-237ENST00000534082 HAP1P54257 671 aaPredicted RBP10.09□□□□□ -0.79
CD44-237ENST00000534082 FAM98CQ17RN3 349 aaKnown RBP10.09□□□□□ -0.79
CD44-237ENST00000534082 FAM182BQ5T319 152 aa10.09□□□□□ -0.79
CD44-237ENST00000534082 CCDC144AA2RUR9 1427 aa10.08□□□□□ -0.8
CD44-237ENST00000534082 ABCA3Q99758 1704 aa10.08□□□□□ -0.8
CD44-237ENST00000534082 CEP350Q5VT06 3117 aa10.08□□□□□ -0.8
CD44-237ENST00000534082 PROM2Q8N271 834 aa10.08□□□□□ -0.8
CD44-237ENST00000534082 NRAPQ86VF7 1730 aa10.07□□□□□ -0.8
CD44-237ENST00000534082 KIF1AQ12756 1690 aa10.07□□□□□ -0.8
CD44-237ENST00000534082 PARD3Q8TEW0 1356 aa10.07□□□□□ -0.8
CD44-237ENST00000534082 C1QTNF8P60827 252 aa10.07□□□□□ -0.8
CD44-237ENST00000534082 CAMKK2Q96RR4 588 aa10.07□□□□□ -0.8
CD44-237ENST00000534082 TNS3Q68CZ2 1445 aa10.07□□□□□ -0.8
CD44-237ENST00000534082 RREB1Q92766 1687 aa10.06□□□□□ -0.8
CD44-237ENST00000534082 CABLES1Q8TDN4 633 aa10.06□□□□□ -0.8
CD44-237ENST00000534082 NUP188Q5SRE5 1749 aa10.06□□□□□ -0.8
CD44-237ENST00000534082 NAIPQ13075 1403 aa10.06□□□□□ -0.8
CD44-237ENST00000534082 THSD7AQ9UPZ6 1657 aa10.06□□□□□ -0.8
CD44-237ENST00000534082 NUTM2FA1L443 756 aa10.05□□□□□ -0.8
CD44-237ENST00000534082 PLEKHG5O94827 1062 aa10.05□□□□□ -0.8
CD44-237ENST00000534082 SPON1Q9HCB6 807 aa10.05□□□□□ -0.8
CD44-237ENST00000534082 CLTCL1P53675 1640 aa10.04□□□□□ -0.8
CD44-237ENST00000534082 NUP155O75694 1391 aa10.04□□□□□ -0.8
CD44-237ENST00000534082 KCNQ2O43526 872 aa10.03□□□□□ -0.8
CD44-237ENST00000534082 TRIM37O94972 964 aa10.03□□□□□ -0.8
CD44-237ENST00000534082 KRT28Q7Z3Y7 464 aa10.03□□□□□ -0.8
CD44-237ENST00000534082 FMN2Q9NZ56 1722 aa10.02□□□□□ -0.8
CD44-237ENST00000534082 FAM83GA6ND36 823 aa10.02□□□□□ -0.81
CD44-237ENST00000534082 APBA3O96018 575 aa10.02□□□□□ -0.81
CD44-237ENST00000534082 FAM50AQ14320 339 aaKnown RBP10.02□□□□□ -0.81
CD44-237ENST00000534082 NBPF8Q3BBV2 869 aa10.02□□□□□ -0.81
CD44-237ENST00000534082 NBPF14Q5TI25 921 aa10.02□□□□□ -0.81
CD44-237ENST00000534082 NRKQ7Z2Y5 1582 aa10.01□□□□□ -0.81
CD44-237ENST00000534082 BTG4Q9NY30 223 aa10.01□□□□□ -0.81
CD44-237ENST00000534082 SPATA31A5Q5VU36 1347 aa10.01□□□□□ -0.81
CD44-237ENST00000534082 SPATA31A7Q8IWB4 1347 aa10.01□□□□□ -0.81
CD44-237ENST00000534082 ARHGEF10O15013 1369 aa10.01□□□□□ -0.81
CD44-237ENST00000534082 COL14A1Q05707 1796 aaKnown RBP10□□□□□ -0.81
CD44-237ENST00000534082 SBNO1A3KN83 1393 aa10□□□□□ -0.81
CD44-237ENST00000534082 RRBP1Q9P2E9 1410 aaKnown RBP9.99□□□□□ -0.81
CD44-237ENST00000534082 GABBR2O75899 941 aa9.99□□□□□ -0.81
CD44-237ENST00000534082 LMOD2Q6P5Q4 547 aa9.99□□□□□ -0.81
CD44-237ENST00000534082 FAM196AQ6ZSG2 479 aa9.99□□□□□ -0.81
CD44-237ENST00000534082 TECPR2O15040 1411 aa9.99□□□□□ -0.81
CD44-237ENST00000534082 KIF1BO60333 1816 aa9.98□□□□□ -0.81
CD44-237ENST00000534082 VGFO15240 615 aaPredicted RBP9.98□□□□□ -0.81
CD44-237ENST00000534082 PSME1Q06323 249 aa9.98□□□□□ -0.81
CD44-237ENST00000534082 MYOM1P52179 1685 aa9.98□□□□□ -0.81
CD44-237ENST00000534082 ROCK1Q13464 1354 aa9.98□□□□□ -0.81
CD44-237ENST00000534082 WAPLQ7Z5K2 1190 aa9.97□□□□□ -0.81
CD44-237ENST00000534082 NRXN1Q9ULB1 1477 aa9.97□□□□□ -0.81
CD44-237ENST00000534082 CASZ1Q86V15 1759 aa9.96□□□□□ -0.81
CD44-237ENST00000534082 GIGYF1O75420 1035 aaPredicted RBP9.96□□□□□ -0.82
CD44-237ENST00000534082 MIER1Q8N108 512 aa9.96□□□□□ -0.82
CD44-237ENST00000534082 PHF8Q9UPP1 1060 aa9.96□□□□□ -0.82
CD44-237ENST00000534082 PLEKHH1Q9ULM0 1364 aa9.96□□□□□ -0.82
CD44-237ENST00000534082 STK26Q9P289 416 aa9.95□□□□□ -0.82
CD44-237ENST00000534082 KNDC1Q76NI1 1749 aa9.95□□□□□ -0.82
CD44-237ENST00000534082 IFT172Q9UG01 1749 aa9.95□□□□□ -0.82
CD44-237ENST00000534082 PPLO60437 1756 aa9.94□□□□□ -0.82
CD44-237ENST00000534082 SPATA31A1Q5TZJ5 1347 aa9.94□□□□□ -0.82
CD44-237ENST00000534082 PAK3O75914 559 aaPredicted RBP9.94□□□□□ -0.82
CD44-237ENST00000534082 CHD4Q14839 1912 aa9.94□□□□□ -0.82
CD44-237ENST00000534082 MNX1P50219 401 aaPredicted RBP9.93□□□□□ -0.82
CD44-237ENST00000534082 GOLGB1Q14789 3259 aaKnown RBP9.93□□□□□ -0.82
CD44-237ENST00000534082 RGPD8O14715 1765 aaPredicted RBP9.93□□□□□ -0.82
CD44-237ENST00000534082 TRPM3Q9HCF6 1732 aaPredicted RBP9.93□□□□□ -0.82
CD44-237ENST00000534082 RPGRIP1LQ68CZ1 1315 aa9.92□□□□□ -0.82
CD44-237ENST00000534082 PLCD3Q8N3E9 789 aa9.92□□□□□ -0.82
CD44-237ENST00000534082 ANO8Q9HCE9 1232 aaPredicted RBP9.92□□□□□ -0.82
CD44-237ENST00000534082 ALS2Q96Q42 1657 aa9.92□□□□□ -0.82
CD44-237ENST00000534082 DLC1Q96QB1 1528 aa9.92□□□□□ -0.82
CD44-237ENST00000534082 RGPD3A6NKT7 1758 aaPredicted RBP9.91□□□□□ -0.82
CD44-237ENST00000534082 RGPD4Q7Z3J3 1758 aa9.91□□□□□ -0.82
CD44-237ENST00000534082 ABCC11Q96J66 1382 aa9.91□□□□□ -0.82
CD44-237ENST00000534082 CRYBG1Q9Y4K1 1723 aa9.91□□□□□ -0.82
CD44-237ENST00000534082 ZBTB7AO95365 584 aa9.91□□□□□ -0.82
CD44-237ENST00000534082 PTGER2P43116 358 aa9.91□□□□□ -0.82
CD44-237ENST00000534082 PDE3BQ13370 1112 aa9.91□□□□□ -0.82
CD44-237ENST00000534082 FHDC1Q9C0D6 1143 aaPredicted RBP9.91□□□□□ -0.82
CD44-237ENST00000534082 PRDM11Q9NQV5 511 aa9.91□□□□□ -0.82
CD44-237ENST00000534082 SYT17Q9BSW7 474 aa9.9□□□□□ -0.82
CD44-237ENST00000534082 PDGFDQ9GZP0 370 aaPredicted RBP9.9□□□□□ -0.82
CD44-237ENST00000534082 STRN4Q9NRL3 753 aa9.89□□□□□ -0.83
CD44-237ENST00000534082 ADGRF5Q8IZF2 1346 aa9.88□□□□□ -0.83
CD44-237ENST00000534082 ZNF579Q8NAF0 562 aaKnown RBP9.88□□□□□ -0.83
CD44-237ENST00000534082 PMFBP1Q8TBY8 1022 aa9.88□□□□□ -0.83
CD44-237ENST00000534082 USP35Q9P2H5 1018 aa9.88□□□□□ -0.83
CD44-237ENST00000534082 ANKARQ7Z5J8 1434 aa9.88□□□□□ -0.83
CD44-237ENST00000534082 YTHDC2Q9H6S0 1430 aaKnown RBP9.88□□□□□ -0.83
CD44-237ENST00000534082 KIAA0232Q92628 1395 aa9.88□□□□□ -0.83
CD44-237ENST00000534082 SHANK3Q9BYB0 1731 aa9.87□□□□□ -0.83
CD44-237ENST00000534082 TMEM132EQ6IEE7 984 aa9.87□□□□□ -0.83
CD44-237ENST00000534082 BARGINQ6ZT62 677 aa9.87□□□□□ -0.83
CD44-237ENST00000534082 SSH2Q76I76 1423 aa9.87□□□□□ -0.83
CD44-237ENST00000534082 GPRASP1Q5JY77 1395 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms