RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 CCDC9Q9Y3X0 531 aaKnown RBP14.94□□□□□ -0.02
CAPN1-225ENST00000533704 ACEP12821 1306 aa14.93□□□□□ -0.02
CAPN1-225ENST00000533704 CRYBG1Q9Y4K1 1723 aa14.93□□□□□ -0.02
CAPN1-225ENST00000533704 CCDC61Q9Y6R9 512 aa14.93□□□□□ -0.02
CAPN1-225ENST00000533704 TONSLQ96HA7 1378 aa14.93□□□□□ -0.02
CAPN1-225ENST00000533704 NBPF8Q3BBV2 869 aa14.92□□□□□ -0.02
CAPN1-225ENST00000533704 NUTM2GQ5VZR2 741 aa14.92□□□□□ -0.02
CAPN1-225ENST00000533704 GJD4Q96KN9 370 aaPredicted RBP14.92□□□□□ -0.02
CAPN1-225ENST00000533704 PPIP5K1Q6PFW1 1433 aa14.92□□□□□ -0.02
CAPN1-225ENST00000533704 COL14A1Q05707 1796 aaKnown RBP14.91□□□□□ -0.02
CAPN1-225ENST00000533704 GLI3P10071 1580 aa14.91□□□□□ -0.02
CAPN1-225ENST00000533704 RALGAPBQ86X10 1494 aa14.91□□□□□ -0.02
CAPN1-225ENST00000533704 BRWD3Q6RI45 1802 aa14.91□□□□□ -0.02
CAPN1-225ENST00000533704 PHRF1Q9P1Y6 1649 aaKnown RBP14.91□□□□□ -0.02
CAPN1-225ENST00000533704 NRAPQ86VF7 1730 aa14.9□□□□□ -0.02
CAPN1-225ENST00000533704 FAM83GA6ND36 823 aa14.9□□□□□ -0.02
CAPN1-225ENST00000533704 POLR3AO14802 1390 aaPredicted RBP14.89□□□□□ -0.03
CAPN1-225ENST00000533704 ATAD2Q6PL18 1390 aa14.89□□□□□ -0.03
CAPN1-225ENST00000533704 PLEKHG3A1L390 1219 aa14.89□□□□□ -0.03
CAPN1-225ENST00000533704 BTG4Q9NY30 223 aa14.88□□□□□ -0.03
CAPN1-225ENST00000533704 EVC2Q86UK5 1308 aa14.88□□□□□ -0.03
CAPN1-225ENST00000533704 CARD11Q9BXL7 1154 aa14.87□□□□□ -0.03
CAPN1-225ENST00000533704 PRDM11Q9NQV5 511 aa14.87□□□□□ -0.03
CAPN1-225ENST00000533704 A0A0G2JS52 829 aa14.86□□□□□ -0.03
CAPN1-225ENST00000533704 MYT1Q01538 1121 aa14.86□□□□□ -0.03
CAPN1-225ENST00000533704 VPS72Q15906 364 aa14.86□□□□□ -0.03
CAPN1-225ENST00000533704 ABTB2Q8N961 1025 aa14.86□□□□□ -0.03
CAPN1-225ENST00000533704 CABP1Q9NZU7 370 aa14.86□□□□□ -0.03
CAPN1-225ENST00000533704 ZC3H6P61129 1189 aaKnown RBP14.85□□□□□ -0.03
CAPN1-225ENST00000533704 CHRNA2Q15822 529 aa14.85□□□□□ -0.03
CAPN1-225ENST00000533704 KIAA0232Q92628 1395 aa14.85□□□□□ -0.03
CAPN1-225ENST00000533704 AKAP12Q02952 1782 aa14.84□□□□□ -0.03
CAPN1-225ENST00000533704 NRKQ7Z2Y5 1582 aa14.83□□□□□ -0.04
CAPN1-225ENST00000533704 SEPT12Q8IYM1 358 aa14.83□□□□□ -0.04
CAPN1-225ENST00000533704 ZBTB7CA1YPR0 619 aa14.82□□□□□ -0.04
CAPN1-225ENST00000533704 USP6P35125 1406 aa14.82□□□□□ -0.04
CAPN1-225ENST00000533704 FAM98CQ17RN3 349 aaKnown RBP14.81□□□□□ -0.04
CAPN1-225ENST00000533704 NLRP13Q86W25 1043 aa14.81□□□□□ -0.04
CAPN1-225ENST00000533704 STRN4Q9NRL3 753 aa14.81□□□□□ -0.04
CAPN1-225ENST00000533704 PCGF6Q9BYE7 350 aa14.8□□□□□ -0.04
CAPN1-225ENST00000533704 PIK3C2AO00443 1686 aa14.8□□□□□ -0.04
CAPN1-225ENST00000533704 NLRP6P59044 892 aa14.79□□□□□ -0.04
CAPN1-225ENST00000533704 BRD4O60885 1362 aaPredicted RBP14.78□□□□□ -0.04
CAPN1-225ENST00000533704 USP19O94966 1318 aa14.78□□□□□ -0.04
CAPN1-225ENST00000533704 SPATA31A5Q5VU36 1347 aa14.78□□□□□ -0.04
CAPN1-225ENST00000533704 SPATA31A7Q8IWB4 1347 aa14.78□□□□□ -0.04
CAPN1-225ENST00000533704 EVA1CP58658 441 aa14.78□□□□□ -0.04
CAPN1-225ENST00000533704 MON2Q7Z3U7 1717 aa14.78□□□□□ -0.04
CAPN1-225ENST00000533704 GCP02774 474 aa14.77□□□□□ -0.05
CAPN1-225ENST00000533704 KRT27Q7Z3Y8 459 aa14.77□□□□□ -0.05
CAPN1-225ENST00000533704 TMC1Q8TDI8 760 aa14.77□□□□□ -0.05
CAPN1-225ENST00000533704 SBNO2Q9Y2G9 1366 aa14.76□□□□□ -0.05
CAPN1-225ENST00000533704 USP35Q9P2H5 1018 aa14.76□□□□□ -0.05
CAPN1-225ENST00000533704 KTN1Q86UP2 1357 aaKnown RBP14.75□□□□□ -0.05
CAPN1-225ENST00000533704 LMO7Q8WWI1 1683 aa14.75□□□□□ -0.05
CAPN1-225ENST00000533704 CAMTA1Q9Y6Y1 1673 aa14.75□□□□□ -0.05
CAPN1-225ENST00000533704 TTC21BQ7Z4L5 1316 aa14.75□□□□□ -0.05
CAPN1-225ENST00000533704 SOX12O15370 315 aa14.75□□□□□ -0.05
CAPN1-225ENST00000533704 ONECUT3O60422 494 aaPredicted RBP14.75□□□□□ -0.05
CAPN1-225ENST00000533704 ZNF692Q9BU19 519 aaPredicted RBP14.75□□□□□ -0.05
CAPN1-225ENST00000533704 SSH2Q76I76 1423 aa14.75□□□□□ -0.05
CAPN1-225ENST00000533704 SLIT3O75094 1523 aa14.74□□□□□ -0.05
CAPN1-225ENST00000533704 RGPD5Q99666 1765 aa14.74□□□□□ -0.05
CAPN1-225ENST00000533704 THSD7AQ9UPZ6 1657 aa14.74□□□□□ -0.05
CAPN1-225ENST00000533704 CPDO75976 1380 aa14.73□□□□□ -0.05
CAPN1-225ENST00000533704 EP400Q96L91 3159 aa14.73□□□□□ -0.05
CAPN1-225ENST00000533704 SPATA31A1Q5TZJ5 1347 aa14.73□□□□□ -0.05
CAPN1-225ENST00000533704 SF3B2Q13435 895 aaKnown RBP14.73□□□□□ -0.05
CAPN1-225ENST00000533704 CCDC125Q86Z20 511 aa14.73□□□□□ -0.05
CAPN1-225ENST00000533704 BLMP54132 1417 aaPredicted RBP14.73□□□□□ -0.05
CAPN1-225ENST00000533704 ST20-MTHFSA0A0A6YYL1 179 aa14.72□□□□□ -0.05
CAPN1-225ENST00000533704 FAM182BQ5T319 152 aa14.72□□□□□ -0.05
CAPN1-225ENST00000533704 LARP1Q6PKG0 1096 aaKnown RBP14.72□□□□□ -0.05
CAPN1-225ENST00000533704 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.72□□□□□ -0.05
CAPN1-225ENST00000533704 CPSF1Q10570 1443 aaKnown RBP14.72□□□□□ -0.05
CAPN1-225ENST00000533704 TTC21AQ8NDW8 1320 aa14.71□□□□□ -0.05
CAPN1-225ENST00000533704 HDGFL2Q7Z4V5 671 aaPredicted RBP14.71□□□□□ -0.05
CAPN1-225ENST00000533704 SLC12A5Q9H2X9 1139 aa14.71□□□□□ -0.05
CAPN1-225ENST00000533704 COL18A1P39060 1754 aa14.7□□□□□ -0.06
CAPN1-225ENST00000533704 COL5A2P05997 1499 aaPredicted RBP14.69□□□□□ -0.06
CAPN1-225ENST00000533704 RGPD1P0DJD0 1748 aa14.69□□□□□ -0.06
CAPN1-225ENST00000533704 DEFB132Q7Z7B7 95 aa14.69□□□□□ -0.06
CAPN1-225ENST00000533704 ZRANB1Q9UGI0 708 aa14.69□□□□□ -0.06
CAPN1-225ENST00000533704 CD163L1Q9NR16 1453 aa14.69□□□□□ -0.06
CAPN1-225ENST00000533704 LTN1O94822 1766 aa14.68□□□□□ -0.06
CAPN1-225ENST00000533704 NME9Q86XW9 330 aa14.68□□□□□ -0.06
CAPN1-225ENST00000533704 KCNH5Q8NCM2 988 aa14.68□□□□□ -0.06
CAPN1-225ENST00000533704 TERF2IPQ9NYB0 399 aa14.68□□□□□ -0.06
CAPN1-225ENST00000533704 USP47Q96K76 1375 aa14.68□□□□□ -0.06
CAPN1-225ENST00000533704 TCP11L2Q8N4U5 519 aa14.67□□□□□ -0.06
CAPN1-225ENST00000533704 TESK2Q96S53 571 aa14.67□□□□□ -0.06
CAPN1-225ENST00000533704 AATKQ6ZMQ8 1374 aa14.67□□□□□ -0.06
CAPN1-225ENST00000533704 A0A1W2PP64 1363 aa14.66□□□□□ -0.06
CAPN1-225ENST00000533704 PDE3BQ13370 1112 aa14.66□□□□□ -0.06
CAPN1-225ENST00000533704 TOM1L2Q6ZVM7 507 aa14.66□□□□□ -0.06
CAPN1-225ENST00000533704 WNK3Q9BYP7 1800 aa14.66□□□□□ -0.06
CAPN1-225ENST00000533704 NFAT5O94916 1531 aa14.66□□□□□ -0.06
CAPN1-225ENST00000533704 CRB1P82279 1406 aa14.66□□□□□ -0.06
CAPN1-225ENST00000533704 USP54Q70EL1 1684 aa14.65□□□□□ -0.06
CAPN1-225ENST00000533704 CSB-PGBD3P0DP91 1061 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms